Cellular pathogenesis in prion diseases

Prion diseases are characterised by neuronal loss, vacuolation (spongiosis), reactive astrocytosis, microgliosis and in most cases by the accumulation in the central nervous system of the abnormal prion protein, named PrP(Sc). In this review on the "cellular pathogenesis in prion diseases", we have chosen to highlight the main mechanisms underlying the impact of PrP(C)/PrP(Sc) on neurons: the neuronal dysfunction, the neuronal cell death and its relation with PrP(Sc) accumulation, as well as the role of PrP(Sc) in the microglial and astrocytic reaction.     

Estimating direct genetic and maternal effects affecting rabbit growth and feed efficiency with a factorial design

The aim of this experiment was to evaluate the significance of neonatal environment on feed efficiency. For that purpose, rabbits from a line selected for residual feed intake (RFI) during 10 generations (G10 kits) were cross‐fostered with non‐selected control does (i.e., G0 line), and reciprocally. In parallel, sibs were fostered by mothers from their original line. Nine hundred animals were raised in individual (N = 456) or collective (N = 320) cages. Traits analysed in this study were body weight at 32 days and at 63 days, average daily gain (ADG), feed intake between weaning and 63 days (FI), feed conversion ratio (FCR) and RFI. The maternal environment offered by does from the line selected for RFI deteriorated the FCR of the kits, independently of their line of origin, during fattening (+0.08 ± 0.02) compared to FCR of kits nursed by G0 does. The line, the type of housing and the batch were significant effects for all the measured traits: G10 kits were lighter than their G0 counterparts at 32 days (?82.9 ± 9 g, p < 0.0001) and at 63 days (?161 ± 16 g, p < 0.0001). They also had a lower ADG (?2.36 ± 0.36 g/day, p < 0.0001), RFI (?521 ± 24 g/day, p < 0.0001) and a lower FI (?855 ± 31 g, p < 0.0001), resulting in a more desirable feed efficiency (FCR: ?0.35 ± 0.02). There was no significant difference in the contrast of G10 and G0 performances between collective and individual/digestive cages (p > 0.22): ?2.35 g/day versus 2.94 g/day for ADG, ?0.39 versus ?0.40 for FCR, ?577 g versus ?565 g for RFI and ?879 g versus ?859 g for FI, respectively). Thus, no genotype‐by‐environment (housing) interaction is expected at the commercial level, that is, no re‐ranking of the animals due to collective housing.     

Immunohistochemical characterization of a hepatic neuroendocrine carcinoma in a cat.

A hepatic mass was identified in a 5-year-old, female mixed-breed cat that died spontaneously after a clinical history of progressive emaciation, ptyalism, and persistent coryza. At necropsy, a 7-cm-diameter, yellow-brown, firm, multilobulated tumor was identified in the liver. Microscopically, the mass consisted of neoplastic cells arranged in small, closely packed nests within a thin fibrovascular stroma. These cells were of medium sized and polygonal, with fine argyrophilic cytoplasmic granules. Nuclei were predominantly round with finely stippled chromatin and indistinct nucleoli. Mitotic figures were numerous. Immunohistochemically, most of the neoplastic cells were immunoreactive for chromogranin A, neuron-specific enolase (NSE), and cytokeratin AE1/AE3 and weakly labeled for synaptophysin. The tumor was negative for glial fibrillary acidic protein (GFAP), vimentin, and cytokeratins 5, 6, 8, and 17. Vascular emboli and intrahepatic micrometastasis were also identified with chromogranin A. All these features were consistent with a hepatic neuroendocrine carcinoma and emphasized the importance of using a panel of antibodies to diagnose such rare tumors.     

Degradability of amino acids in selected legume forages using the in situ nylon-bag technique

This study was conducted to determine the amino acid profiles and rumen degradability of amino acids of three cultivated forage legumes – velvet bean (Mucuna pruriens), cowpea (Vigna unguiculata) and silverleaf desmodium (Desmodium uncinatum) – using the in situ nylon-bag technique. Two Friesian cows fitted with 10-cm-diameter rumen cannulae on a complete dairy feed ration (19% crude-protein dairy meal and maize silage) were used. Silverleaf desmodium had significantly (p < 0.05) higher concentration of amino acids compared with cowpea and velvet bean. Aspartic acid showed the highest (p < 0.05) concentration in all legumes and cysteine showed the lowest concentration. Legume forage of cowpea showed the highest (p < 0.05) level of degradability of amino acid followed by silverleaf desmodium and then velvet bean. Readily and slowly degradable components in all amino acids were highest (p < 0.05) in cowpea followed by silverleaf desmodium and then velvet bean. Moreover, silverleaf and cowpea showed higher (p < 0.05) levels of effective degradability of amino acids (at outflow rates p = 0.02, 0.04 and 0.06 h^?1) than velvet bean. Total amino acid disappearance was the least in velvet bean, which suggests that it can be used to supply bypass protein to the duodenum of the ruminant animal.     

Deciphering rangeland transformation—complex dynamics obscure interpretations of woody plant encroachment

Context

Woody plant encroachment—the conversion of grasslands to woodlands—is among the greatest challenges faced by rangelands worldwide. Yet this phenomenon is poorly understood, and complex land use dynamics make interpreting the timing and extent of land cover changes a global challenge.

Objectives

For many regions, the true degree and rate of historical change in woody cover and cropland remain unknown. We quantify these processes and explore the effects of prior cultivation on woody plant distribution.

Methods

In the Lampasas Cut Plain, USA, we measured rangeland transformation using digital classification of aerial imagery 1937–2012. Our study is the first to use data of such high spatial and temporal resolution to address this question at this scale. We also provide some of the first documentation of dramatic regional cropland abandonment.

Results

Although total woody cover remained almost unchanged (1937: 28%, 2012: 27 %), woody cover underwent a major redistribution across the landscape. Formerly open areas attained much greater levels of woody cover, and previously wooded areas lost woody cover. As cropland area declined by 78 %, woody plants invaded former croplands more slowly than the rangeland portions of the area (0.1 % year^?1 vs. 0.3 % year^?1, respectively).

Conclusions

These findings conflict with widely held assumptions and suggest that woody plant encroachment is more nuanced than often recognized. Multiple dynamics and past conditions interact in complex ways to produce landscape change. Because perceptions of encroachment determine how we respond to this challenge, great care should be taken in interpreting observed woody plant encroachment of the world’s rangelands.

     

Micro-Spatial Variability of Soil Nitrate Following Nitrogen Fertilization and Drip Irrigation

Micro-spatial analysis of nitrate (NO₃), an environmental contaminant partially attributed to nitrogen fertilization, can be useful for estimating its distribution in soils. A study was conducted to determine the micro-spatial distribution of soil NO₃ using kriging and cokriging in a drip-irrigated and nitrogen-fertilized field. One hundred soil samples were collected in a regular grid pattern from a 10 m × 20 m plot, and analyzed for soil NO₃ and pH. The effect of reduced sample size on NO₃ estimation was also evaluated. The pH data indicated the soils were slightly acidic to neutral with log[NO₃] values ranging from 1.66 to 2.95. These parameters were inversely related; which was probably an attribute of soil nitrification process. Sample variograms and cross-variograms suggested that the spatial distribution of pH and log[NO₃] could be described by linear models in the area studied, as indicated by small MSE (mean sum error), and RKV (reduced kriging variance) values close to 1. Contour maps based on kriging and cokriging estimates indicated greater homogeneity of the variables in the south-north direction than the east-west, except for zones of high NO₃ and low pH in the north-central edge and north-east corner of the grid area. Cokriging of log[NO₃] estimation, using pH data, improved MSE, MSSE (mean sum square error), MKV (mean kriging variance), RKV, CEE (correlation between estimated data and error), CEM (correlation between estimated and measured data) by 46, 31, 30, 22, 96, and 98%, respectively, as compared to kriging. Lower cokriging variance for any estimated log[NO₃] value, as compared to the kriging analysis, indicated that cokriging provided more accurate estimates. With reduced sample observations (n) for NO₃ similar conclusions were obtained; and the estimation accuracy was maintained up to n >70. Cokriging analysis with reduced n also curtailed the analytical cost, and facilitated NO₃ estimation by means of pH, which was measured at a cheaper cost.     

Effects of blue shrimp Litopenaeus stylirostris and goldlined rabbitfish Siganus lineatus in mono‐ and polyculture on production and environmental conditions

This study was conducted to compare the effects of shrimp and rabbitfish in mono‐ and polyculture stocked at high biomass on production and environmental conditions in a mesocosm system. Shrimp (14 g) and/or rabbitfish (19 g) were stocked in four treatments with different density but with the same total biomass (236 g m^?2), including shrimp monoculture (SM) (17 shrimp m^?2), shrimp–fish polyculture (SF) (11 shrimp and 4 rabbitfish m^?2), fish–shrimp polyculture (FS) (6 shrimp and 8 rabbitfish m^?2) and fish monoculture (FM) (12 rabbitfish m^?2). After 10 weeks of experiment, shrimp survival and biomass were low in the treatments where shrimp were dominant (SM, SF), while rabbitfish survival and biomass were high in all the treatments. Shrimp mortality was assumed to be related to an excess of the system carrying capacity (CC). Results suggested that CC is linked to shrimp biomass/density rather than the system eutrophication level. The ecosystem became heterotrophic as daily feed supply was beyond 7 g m^?2 per day. This threshold corresponded to the environmental CC of the semi‐intensive shrimp culture system. Under these conditions, the combination of high fish biomass and low shrimp biomass appeared as the most valuable in terms of system performances.     

Validation of Diagnostic Methods for European Foulbrood on Commercial Honey Bee Colonies in the United States

One of the most serious bacterial pathogens of Western honey bees (Apis mellifera Linnaeus [Hymenoptera: Apidae]) is Melissococcus plutonius, the cause of the disease European foulbrood. Because European foulbrood is highly variable, with diverse outcomes at both the individual and colony levels, it is difficult to diagnose through visual inspection alone. Common lab diagnostic techniques include microscopic examination and molecular detection through PCR. In 2009, a lateral flow device was developed and validated for field diagnosis of European foulbrood. At the time, M. plutonius was thought to be genetically homogenous, but we have subsequently learned that this bacterium exists as multiple strains, including some strains that are classified as ‘atypical’ for which the lateral flow device is potentially less effective. These devices are increasingly used in the United States, though they have never been validated using strains from North America. It is essential to validate this device in multiple locations as different strains of M. plutonius circulate in different geographical regions. In this study, we validate the field use of the lateral flow device compared to microscopic examination and qPCR on larval samples from 78 commercial honey bee colonies in the United States with visual signs of infection. In this study, microscopic diagnosis was more sensitive than the lateral flow device (sensitivity = 97.40% and 89.47%, respectively), and we found no false positive results with the lateral flow device. We find high concurrence between the three diagnostic techniques, and all three methods are highly sensitive for diagnosing European foulbrood.     

Development and testing of a Bayesian population model for the bigeye thresher shark,Alopias superciliosus,in an area subset of the western North Pacific

A Bayesian population modelling tool integrating separable virtual population analysis, per‐recruit models and age‐structured demographic analysis was developed for the bigeye thresher Alopias superciliosus (Lowe) population in an area subset of the western North Pacific. The mortality rates for years 1989–2016 were estimated, various biological reference points and associated risks of decline were also estimated, and alternative harvest strategies for the stock were evaluated. Estimates of the posterior mean of fishing mortality for bigeye thresher shark suggest fishing pressure has been high in recent years (2011–2016). The estimated population growth rate (λ) (without fishing) obtained from age‐structured demographic model was relatively low (λ = 1.01 per year; 95% confidence intervals of 1.00 and 1.03 per year). Risk analyses revealed that only low levels of fishing pressure (10% of the current fishing pressure) over a wide range of ages could maintain a relatively low risk of population decline for bigeye threshers. Sensitivity testing indicated that the model is robust to prior specification. The developed framework could be used as an assessment tool to evaluate the risk of decline for other widely distributed pelagic shark species where insufficient catch and effort data are available.