Genetic population structure and variation at phenology-related loci in anadromous Arctic char (Salvelinus alpinus)

The Arctic will be especially affected by climate change, resulting in altered seasonal timing. Anadromous Arctic char (Salvelinus alpinus) is strongly influenced by sea surface temperature (SST) delimiting time periods available for foraging in the sea. Recent studies of salmonid species have shown variation at phenology-related loci associated with timing of migration and spawning. We contrasted genetic population structure at 53 SNPs versus four phenology-related loci among 15 anadromous Arctic char populations from Western Greenland and three outgroup populations. Among anadromous populations, the time period available for foraging at sea (>2°C) ranges from a few weeks to several months, motivating two research questions: (a) Is population structure compatible with possibilities for evolutionary rescue of anadromous populations during climate change? (b) Does selection associated with latitude or SST regimes act on phenology-related loci? In Western Greenland, strong isolation by distance at SNPs was observed and spatial autocorrelation analysis showed genetic patch size up to 450 km, documenting contingency and gene flow among populations. Outlier tests provided no evidence for selection at phenology-related loci. However, in Western Greenland, mean allele length at OtsClock1b was positively associated with the time of year when SST first exceeded 2°C and negatively associated with duration of the period where SST exceeded 2°C. This is consistent with local adaptation for making full use of the time period available for foraging in the sea. Current adaptation may become maladaptive under climate change, but long-distance connectivity of anadromous populations could redistribute adaptive variation across populations and lead to evolutionary rescue.     

Population structure of Phytophthora infestans in China – geographic clusters and presence of the EU genotype Blue_13

The population structure of Phytophthora infestans in China was studied and three mitochondrial haplotypes (Ia, IIa, IIb) were observed. Genetic analysis with 10 highly informative SSR markers identified 68 different genotypes, including three dominant clonal lineages. In the Chinese P. infestans population, the genotypes were strongly clustered according to their geographic origin. One of dominant clonal lineages was genetically similar to Blue_13, a dominant clonal lineage found in Europe since 2004. This is the first report of Blue_13 outside Europe. Only one mating type (A1) was found in the northern and southeastern provinces, but in southern and northwestern China both mating types were observed. The mating type ratio and SSR allele frequencies indicate that in China the sexual cycle of P. infestans is rare. These results emphasize that the migration of asexual propagules and the generation of subclonal variation are the dominant driving factors of the population structure of P. infestans in China. They may also have implications for the role of monitoring P. infestans populations in potato late blight management strategies in China.     

Natural mortality augments population fluctuations of forage fish

Forage fish are a vital part of marine ecosystems, partly by supporting some of the largest fisheries worldwide, but also due to their role in food webs as prey for larger fish and other predators. One of the unresolved questions about forage fish dynamics is the causes of their significant temporal fluctuations. These fluctuations are often attributed to changes in environmental conditions, but direct correlations have proven hard to find. Here, we show how time‐varying predation mortality additionally plays a substantial role in forage fish population fluctuations. By analysing 10 stocks that have estimates of natural mortality changes through time, we find that natural mortality on average increases as population biomass declines towards a trough, and to a lesser degree decreases, when their biomass is growing towards a peak. While depensatory mortality was dominant on average in biomass dynamics leading up to peaks or troughs, some of the stocks exhibited compensatory mortality emphasizing variation between stocks. Furthermore, we show that the magnitude of natural mortality and productivity is generally higher than fishing mortality. The results underscore the importance of top‐down control on the dynamics of forage fish. We conclude that a holistic ecosystem analysis is required for a better ecological understanding of forage fish dynamics.     

Osmium isotopic evidence for mesozoic removal of lithospheric mantle beneath the sierra nevada, california

Thermobarometric and Os isotopic data for peridotite xenoliths from late Miocene and younger lavas in the Sierra Nevada reveal that the lithospheric mantle is vertically stratified: the shallowest portions (<45 to 60 kilometers) are cold (670 degrees to 740 degrees C) and show evidence for heating and yield Proterozoic Os model ages, whereas the deeper portions (45 to 100 kilometers) yield Phanerozoic Os model ages and show evidence for extensive cooling from temperatures >1100 degrees C to 750 degrees C. Because a variety of isotopic evidence suggests that the Sierran batholith formed on preexisting Proterozoic lithosphere, most of the original lithospheric mantle appears to have been removed before the late Miocene, leaving only a sliver of ancient mantle beneath the crust.     

Reduced radiative conductivity of low-spin (Mg,Fe)O in the lower mantle

Optical absorption spectra have been measured at pressures up to 80 gigapascals (GPa) for the lower-mantle oxide magnesiowüstite (Mg,Fe)O. Upon reaching the high-spin to low-spin transition of Fe2+ at about 60 GPa, we observed enhanced absorption in the mid- and near-infrared spectral range, whereas absorption in the visible-ultraviolet was reduced. The observed changes in absorption are in contrast to prediction and are attributed to d-d orbital charge transfer in the Fe2+ ion. The results indicate that low-spin (Mg,Fe)O will exhibit lower radiative thermal conductivity than high-spin (Mg,Fe)O, which needs to be considered in future geodynamic models of convection and plume stabilization in the lower mantle.     

Analysis of protein structures and interactions in complex food by near-infrared spectroscopy. 1. Gluten powder

The potential of near-infrared (NIR) spectroscopy in detailed food analysis was tested in a model system consisting of gluten powder treated with moisture and heat. Second-derivative transformation and extended multiplicative signal correction were applied for improving the band resolution and removing physical and quantitative spectral variations. Subsequent chemometric analyses gave loading spectra, which were interpreted as spectral effects of altered protein structures, induced by the treatments. Moistening of the gluten powder resulted in shifts and intensity changes in the protein bands, which could be explained by a combination of minor secondary structure changes, water binding, and changed microenvironments of the amino acid side chains. Heat denaturation induced increases at 2209 nm and decreases at 2167-2182 nm, indicating an alpha-helix to beta-sheet transformation, in agreement with the expectations.