Effects of Early and Late Harvest on Agronomic Performance and Stability of Late Blight Resistant (R-gene Free) Potato Genotypes

Late blight is an important constraint to potato production and genotype resistance is an effective disease control mesure. Ten late blight resistant potato genotypes (R-gene free) were assessed for yield performance and stability at early (90 days) and late harvest (120 days) at two locations in Kenya during two years. Significant differences (P ≤ 0.05) in area under disease progress curves (AUDPC) were detected among potato genotypes. Resistant genotypes free of R-genes had significantly (P ≤ 0.05) higher yield at late than early harvest, perhaps due to increased tuber bulking period. The rank of genotypes for AUDPC, late blight resistance, and tuber yield varied across seasons and locations (environment). Additive main effects and multiplicative interaction (AMMI) analysis of tuber yield and late blight resistance resulted in significant (P ≤ 0.05) effects of genotypes (G) and environments (E). The proportion of genotypic variance was larger than the environmental variance and the G × E interactions. For tuber yield, the G, E, and G × E interactions accounted for 42.9, 39.6 and 17.5%; and 53.4, 29.7, and 16.9% at early and late harvests, respectively. For AUDPC, G, E, and G × E accounted for 80.2, 5.0, and 14.8%; as well as 82.3, 4.6, and 13% for early and late harvests, respectively. The resistance of potato genotypes without R-genes varied. Selective deployment of resistant genotypes can improve potato tuber yield.     

Incidence and new records of Mycosphaerella species within a Eucalyptus globulus plantation in Western Australia

Eucalyptus globulus is the predominant exotic hardwood plantation species in Western Australian (WA), and is often planted adjacent to native eucalypt forests. The increase in number of Mycosphaerella species associated with Mycosphaerella leaf disease (MLD) in E. globulus plantations in WA in the past decade has raised concern about the possible movement of pathogens between the native forests and plantations. In order to determine whether the introduction of new E. globulus genetics into WA may have further exacerbated this situation, juvenile and adult foliage were taken from a genetics trial near Albany, WA consisting of 60 full-sib families and Mycosphaerella species identified using morphological and molecular tools. Eleven species of Mycosphaerella were identified from one plantation: Mycosphaerella fori (Pseudocercospora fori) and Mycosphaerella ellipsoidea are new records for Australia; Mycosphaerella tasmaniensis (Passalora tasmaniensis) and Mycosphaerella suttoniae (Kirramyces epicoccoides) are new records for WA; and Mycosphaerella nubilosa, Mycosphaerella cryptica, Mycosphaerella marksii, Mycosphaerella molleriana, Mycosphaerella lateralis, Mycosphaerella aurantia and Mycosphaerella parva, previously recorded for WA. The most frequently isolated species from juvenile foliage was M. marksii (77%) followed by M. nubilosa (33%). M. nubilosa was most frequently isolated from adult leaves (88%) followed by M. parva (7.5%). Three species, M. molleriana, M. lateralis and M. cryptica, were only isolated from adult leaves while M. ellipsoidea was only isolated from juvenile leaves. These records increase the number of known Mycosphaerella species from eucalypts in WA from 10 to 13. The increase in the number, distribution and impact of Mycosphaerella species contributing to MLD in WA is of concern both to the potential productivity of the plantations and the biosecurity of native WA Eucalyptus species. Continued monitoring of the plantation estate is required to understand the dynamics of the host–pathogen interactions.     

利用AFLP进行“甘蔗属复合体”系统演化和亲缘关系研究

采用AFLP分子标记技术，对“甘蔗属复合体”中4个属16个种的69份来自中国和澳大利亚的甘蔗种质资源材料进行系统演化和亲缘关系分析。2对AFLP引物共检测到173个标记，其中172个为多态标记，多态率达99.4%；通过计算Jaccard相似性系数，用UPGMA和PCA法构建了分子系统树和效应图。结果表明：(1)属间亲缘关系中，甘蔗属与芒属较     

Analysis of rice blast resistance gene <Emphasis Type="Italic">Pi</Emphasis>-<Emphasis Type="Italic">z</Emphasis> in rice germplasm using pathogenicity assays and DNA markers

The Pi-z gene in rice confers resistance to a wide range of races of the rice blast fungus, Magnaporthe oryzae. The objective of this study was to characterize Pi-z in 111 rice germplasm accessions using DNA markers and pathogenicity assays. The existence of Pi-z in rice germplasm was detected by using four simple sequence repeat (SSR) markers (RM527, AP4791, AP5659-1, AP5659-5) closely linked to Pi-z, and was verified using pathogenicity assays with an avirulent strain (IE1k) and two virulent races (IB33 and IB49). Among 111 germplasm accessions evaluated, 73 were found to contain the Pi-z gene using both SSR markers and pathogenicity assays. The remaining 38 germplasm accessions were found to be inconsistent in their responses to the blast races IB33, IEIk and IB49 with expected SSR marker alleles, suggesting the presence of unexpected SSR alleles and additional R gene(s). These characterized germplasm can be used for genetic studies and marker-assisted breeding for improving blast resistance in rice.     

Degradation Kinetics of Perchlorate in Sediments and Soils

This study investigated the intrinsic perchlorate (ClO₄ ^-)degradation kinetics of sediments and soils from multiple sites in microcosm studies, including the influence of varying nitrate concentration (NO₃ ^--N from 1 to 22.8 ppm) and up to 300 ppm sulfate. The first-order degradation rates and lag times of both ClO₄ ^- and NO₃ ^- degradation were site-specific and dependent on environmental conditions such as organic substrate availability, nitrate, initial ClO₄ ^- concentration, and prior ClO₄ ^- exposure. At an initial ClO₄ ^- concentration of 5 ppm, ClO₄ ^- degradation rates ranged from 0.13 to 0.46 day^-1, and lag times of ClO₄ ^- degradation ranged from 0 to 60.0 days; while NO₃ ^- degradation occurred at rates ranging from 0.03 to 1.42 day^-1, with lag times ranging from 0 to 29.7 days. Under the same treatment conditions, NO₃ ^- degradation rates were relatively higher than that of ClO₄ ^-. Perchlorate degradation rates remained constant at both lower (0.5 ppm) and higher (5 ppm) ClO₄ ^- concentrations. Generally, ClO₄ ^- rates were affected by the availability of organic substrate, which was represented here by Total Volatile Solids (TVS) of sediments and soils, and not by NO₃ ^-. Nitrate did increase the lag time of ClO₄ ^- degradation, which may account for the persistence of ClO₄ ^- in the environment, especially when ClO₄ ^- is typically ppb levels in the environment compared to ppm levels of NO₃ ^-. This study showed rapid intrinsic ClO₄ ^- degradation in sediments and soils of contaminated sites, and highlighted the potential for natural attenuation of ClO₄ ^- in the environment.     

Genetic relationships between attributes in sugarcane clones closely related to Saccharum spontaneum

Summary Saccharum spontaneum is being used in sugarcane breeding programs in attempt to improve characteristics such as ratooning ability and stress tolerance. A population of F₁ (Saccharum officinarum or commercial variety x S. spontaneum) and F₁ x F₁ sugarcane clones was evaluated for sugar yield and a range of yield components in a plant and two ratoon crops. The aim was to determine genetic correlations between attributes in clones with a large component of S. spontaneum, that could be used to help derive appropriate selection indices in such populations.There were close associations between the same attributes measured in different crop-years and the associations between different attributes were generally similar across crop-years. Stalk number and fibre content were positively correlated, as were stalk weight and CCS. The latter two attributes (which are low in S. spontaneum but high in S. officinarum) were negatively correlated with the former two (high in S. spontaneum, low in S. officinarum). Sugar yield was more closely associated with stalk weight and CCS than with stalk number but became more closely associated with stalk number with successive ratoon crops.CCS was positively correlated (r_g=0.55) with cane yield in the plant crop but showed a small negative correlation with cane yield (r_g=–0.20) in the second ratoon crop. CCS (measured in any crop) also had a negative correlation with cane yield in the ratoon crops expressed as a percentage of plant cane yield. This suggests that CCS is negatively correlated with levels of traits contributing to ratooning ability. Intensive selection among such populations for CCS without consideration of ratooning performance may reduce the frequency of favourable specific ratooning characteristics.Abbreviations CCS commercial cane sugar     

Characterization of intergeneric hybrids of <Emphasis Type="Italic">Erianthus rockii</Emphasis> and <Emphasis Type="Italic">Saccharum</Emphasis> using molecular markers

Erianthus rockii, a wild relative of sugarcane, is drought and cold tolerant, and both are potentially important agronomic traits to the sugarcane industry worldwide. As such it is of interest as a source of parental germplasm to sugarcane breeders and is currently being used in sugarcane introgression programs in both China and Australia. To date morphological characters have been used to verify the putative hybrids produced. Two crosses were generated between two different Saccharum species and two E. rockii accessions. Over 400 AFLP markers were used to identify the intergeneric hybrid progeny as well as determine hybrid diversity. Both crosses generated hybrids but efficiency levels were very different and are probably related to the different Saccharum parent used in each cross. Cross 1 was between a Saccharum officinarum and E. rockii and generated 100% hybrid progeny. Cross 2, however, was between a sugarcane hybrid (S. officinarum × Saccharum spontaneum) and E. rockii and only 10% of the progeny were intergeneric hybrids. Inheritance of markers in the progeny was analysed and for both crosses there were equal numbers of markers from both parents indicating n + n transmission of chromosomes. This is the first verification of E. rockii hybrids with molecular markers. It may now be possible to exploit genes of value from E. rockii in sugarcane breeding programs.     

Field scale spatiotemporal analysis of surface soil moisture for evaluating point-scale in situ networks

Soil moisture is an intrinsic state variable that varies considerably in space and time. From a hydrologic viewpoint, soil moisture controls runoff, infiltration, storage and drainage. Soil moisture determines the partitioning of the incoming radiation between latent and sensible heat fluxes. Although soil moisture may be highly variable in space and time, if measurements of soil moisture at the field or small watershed scale are repeatedly observed, certain locations can often be identified as being temporally stable and representative of the an area average. This study is aimed at determining the adequacy of long term point-scale surface soil moisture measurements in representing local field scale averages which may ultimately serve as in situ locations for the calibration and validation of remotely sensed soil moisture. Experimental data were obtained by frequency-domain reflectometry (FDR) sensors permanently installed in two agricultural fields, AS1 and AS2 (2.23 and 2.71 ha, respectively) at a depth of 5 cm. Twenty additional FDR sensors, spaced 35 m apart, were installed horizontally at a depth of 5 cm in each field with automated data collection being transmitted every 30 min from July 15 through September 20, 2009. Additionally, meteorological data were obtained from existing weather stations in each field. The FDR sensors revealed persistent patterns in surface soil moisture within each field and identified sites that were temporally stable. The locations that were optimal for estimating the area-average field water contents were different from the permanent sensor locations in both fields. Permanent sensor data showed approximately 4 and 10% mean relative differences for fields AS1 and AS2, respectively, with relatively large standard deviations. Thus, minimum offset values could be applied to the temporally stable field sites to obtain representative field average values of surface soil moisture. However, use of permanent sensor data for offset estimates gave poor results. These findings are of relevance for applications of geospatial surface soil moisture data assimilation in hydrologic modeling when only point-scale observations are available, as well as, remotely sensed surface soil moisture calibration and validation studies.