Amino acid preferences for specific locations at the ends of alpha helices

A definition based on alpha-carbon positions and a sample of 215 alpha helices from 45 different globular protein structures were used to tabulate amino acid preferences for 16 individual positions relative to the helix ends. The interface residue, which is half in and half out of the helix, is called the N-cap or C-cap, whichever is appropriate. The results confirm earlier observations, such as asymmetrical charge distributions in the first and last helical turn, but several new, sharp preferences are found as well. The most striking of these are a 3.5:1 preference for Asn at the N-cap position, and a preference of 2.6:1 for Pro at N-cap + 1. The C-cap position is overwhelmingly dominated by Gly, which ends 34 percent of the helices. Hydrophobic residues peak at positions N-cap + 4 and C-cap - 4.     

The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism

Diatoms are unicellular algae with plastids acquired by secondary endosymbiosis. They are responsible for approximately 20% of global carbon fixation. We report the 34 million-base pair draft nuclear genome of the marine diatom Thalassiosira pseudonana and its 129 thousand-base pair plastid and 44 thousand-base pair mitochondrial genomes. Sequence and optical restriction mapping revealed 24 diploid nuclear chromosomes. We identified novel genes for silicic acid transport and formation of silica-based cell walls, high-affinity iron uptake, biosynthetic enzymes for several types of polyunsaturated fatty acids, use of a range of nitrogenous compounds, and a complete urea cycle, all attributes that allow diatoms to prosper in aquatic environments.     

Do riparian buffer strips mitigate the impacts of clearcutting on small mammals?

We assessed the impact of clearcutting on small mammals in riparian areas and evaluated riparian buffer strips as a tool for conserving small mammals in managed forests. Over two summers, we trapped small mammals of seven species in riparian areas in southwestern British Columbia, Canada. Communities of small mammals were compared across three different habitat types: (1) clearcut to the stream bank, (2) clearcut with a 30 m riparian buffer strip, and (3) control (no logging). Species richness was significantly lower in clearcuts than in controls and buffers. On clearcut sites, creeping voles were more abundant, but red-backed voles and dusky shrews were less abundant than at the control sites. At sites with riparian buffer strips, both voles were present in numbers similar to those found in controls, but dusky shrews were less common. Significantly more deer mice and creeping voles were infested with bot flies at clearcut sites than at buffer sites, and no animals were infested at any of the control sites. Riparian reserves appear to be useful in reducing the short-term impacts of clearcutting on small mammal communities, though they do not eliminate these impacts altogether.     

Comparison of two- and three-way rotational crossing and synthetic variety production involving inbred lines of Hereford cattle: postweaning traits

Data for this linecrossing study were the postweaning growth and weight records of calves born from 1967 through 1975. The records consisted of 264 bull (M) and 263 heifer (F) straightline (SL) calves; 108 M and 100 F two-line rotational cross (2W) calves; 130 M and 102 F three-line rotational cross (3W) calves and 58 M and 51 F synthetic variety (SV) calves, all in the Hereford breed. Average inbreeding percentages of calves and dams in Lines 1, 4, 6 and 10 were 24, 28, 34 and 28; respectively. The M calves were fed a growing-fattening diet for 196 d after a 14-d period of adjustment to postweaning environment. The F calves were fed to gain approximately .5 kg daily during winter from weaning to about 12 mo of age and were then grazed on native pasture until about 18 mo of age. For M, average percentage increases over SL by 2W, 3W and SV combined over three generations were respectively, 9.0, 11.0, 11.6 for initial weight; 5.9, 8.1, 8.8 for 140-d weight; 4.8, 7.2, 7.7 for final 196-d weight and 1.5, 4.2, 4.7 for 196-d gain. All above estimates of increased weight or gain over SL were significant except for 196-d gain in 2W. For F, average percentage increases over SL by 2W, 3W and SV, respectively, were 9.0, 10.9, 11.3 for initial weight; 8.2, 9.2, 8.4 for 12-mo weight; 7.5, 7.7, 9.1 for 18-mo weight; 5.2, 5.3, 5.7 for 18-mo score. All these estimated increases over SL were significant.(ABSTRACT TRUNCATED AT 250 WORDS)     

Use of an external skeletal fixation device and bone graft for arthrodesis of the metacarpophalangeal joint in horses

Arthrodesis of the metacarpophalangeal joint was attempted in 9 adult horses, using a new external skeletal fixation device and autogenous cancellous bone graft. Four horses had excellent results, 2 horses had fair results, arthrodesis failed in 2 horses, and 1 horse fractured the third metacarpal bone. The advantages of the technique included minimal surgical trauma to the area of injury, immediate rigid fixation of the metacarpophalangeal joint, and access for treatment of soft-tissue lesions at the site of injury. Although pin loosening and pin-track infection were complications when the device was in place, all pin tracks healed without complications after device removal.     

Cisplatin Therapy in 41 Dogs With Malignant Tumors

Forty-one dogs with a variety of histopathologically diagnosed, measurable tumors were treated with cisplatin (cis-diamminedichloroplatinum, Platinol, Bristol Laboratories, Syracuse, NY 13221-4755) as a single agent at a dosage of 60 mg/m2 given intravenously at 3-week intervals. In an attempt to avoid renal toxicity of cisplatin, saline diuresis was induced and maintained for 4 hours before and 2 hours following cisplatin administration. The dogs received one to ten doses of cisplatin. To determine response to therapy and to monitor toxicity of the drug, the dogs were evaluated with physical examinations including tumor measurements, radiography, complete blood counts, platelet counts, urinalyses, serum urea nitrogen concentrations, and serum creatinine concentrations. An overall response rate of 19% was observed. Complete remission occurred in one of 11 dogs with squamous cell carcinomas and one of one dog with a mediastinal undifferentiated carcinoma. Partial remissions were documented in one of 11 dogs with squamous cell carcinomas, two of three dogs with metastatic osteosarcomas, one of three dogs with nasal adenocarcinomas, and one of one dog with a thyroid adenocarcinoma. Toxic side effects were primarily gastrointestinal in nature, with vomiting occurring 1-6 hours after cisplatin administration in 27 of 41 dogs. Severe anorexia occurred in three dogs, and hemorrhagic diarrhea was observed in one dog. One dog developed grand mal seizures and died 3 hours following therapy. Granulocytopenia was documented in six dogs, and thrombocytopenia was observed in four dogs. One dog showed an increase in serum urea nitrogen and creatinine concentrations, but this patient had known pre-existing renal disease.(ABSTRACT TRUNCATED AT 250 WORDS)     

A subacute toxicity study on 99m Tc stannous Glucoheptonate injection.

A subacute toxicity study on 99m Tc stannous glucoheptonate was performed with rats, dogs and rabbits, injected intravenously at ten to 100 times the human dose on a body weight basis. There were no abnormalities in the clinical status of any of the animals. No changes were found in urinalysis, blood chemistry or hematology in the rabbit nor in gross examination, renal histology or bone marrow smears in the rats and rabbits. Hepatic histology was also done. A focal area of necrosis in a liver of one rabbit that had been injected with 100 times the human dose was observed using light microscopy. Examination by electron microscopy in another group of rats and rabbits was prompted by the observation of that lesion. This revealed vacuolated and dilated smooth endoplasmic reticulum and degranulated and vesiculated rough endoplasmic reticulum in all the test livers. X-ray microanalysis indicates that the ultrastructural changes are linked to the deposition of tin.     

Hemodynamic effects of xylazine in the calf

The hemodynamic effects of sedative level doses of xylazine in five chronically instrumented calves were studied. These effects included immediate and prolonged reductions in heart rate, cardiac output, arterial blood pressure, and left ventricular dp/dt max. Stroke volume showed an initial decrease in value with a return in 15 minutes to base-line values. Total peripheral resistance, end-diastolic left ventricular pressure, end-diastolic left ventricular volume, and left ventricular residual fraction were increased after drug administration. The results indicate that a depressed myocardium results from xylazine administration. With one exception (the absence of a hypertensive response), these effects largely parallel, both quantitatively and qualitatively, those seen with this drug in other species. Sedation by xylazine is produced in cattle at doses which are small compared to those which is required for sedation in other species. These same small doses in cattle also cause hemodynamic changes.