Non-invasive measurement of fillet composition of four freshwater fish species by computer tomography

Thecrude fat and crude protein content of fillets was predicted by X-ray computertomography (CT) and determined by chemical analyses. Between 20 to 40 serialscans were taken of 48 freshwater fish and samples from the ground fillet withskin were prepared for chemical analyses. Fish species investigated were asfollows: common carp (n = 18), grass carp (n = 10), silver carp (n = 10) andpike-perch (n = 10), all collected directly from fishponds and processedimmediately. The variables of the prediction equations were taken from thedensity values of the Hounsfield scale, on a range between –90 and+150, by summing the frequencies within each interval of 10 values. Withprincipal component analysis fillet fat and crude protein content could beestimated with R² = 0.88 and R² = 0.87 accuracy,respectively. Three dimensional"volumetric" estimation of fat tissue was also carried out on the basis of fatindices developed at our lab. The fillet composition of the Cyprinid speciescould be evaluated well with the applied methods, but not that of pike-perchwhich had an extremely low fillet and body fat content.     

Influence of homogenized residues of anaerobic digestate on the physicochemical properties of differently textured soils

Because of the focus on renewable energy, new biogas digesters are being built with the consequence of an increased production of anaerobic digestates (AD) as a by‐product. Although they can be used as organic fertilizer on arable fields, negative impacts of these digestates also may occur. Therefore, it was the aim of this laboratory study to investigate the effect of a normally applied volume of 30 m³ ha^?1 of anaerobic digestates derived from a ground input substrate of maize (Zea mays L.) , sugar beet (Beta vulgaris L.), and wheat (Triticum aestivum L.) in different ratios (100 /80 / 20%) on the properties of two soils. The soils, which were homogenized (sieved to ≤ 2 mm) and placed in columns with a defined bulk density of 1.45 g cm^?3, were a Cambic Luvisol (sandy loam) derived from glacial till and a Podzol (sandy sand) derived from glazial outwash. Physicochemical parameters [pH, electrical conductivity (EC)] and the wetting behavior of the soils were analyzed by measuring the contact angle (CA) by using the Wilhelmy–Plate‐Method (WPM) and the Repellency Index (RI) from the sorptivity of water and ethanol. To determine the risk of soil dispersion as a consequence of digestate amendment, the amount of readily dispersible clay (RDC) was determined by detecting the turbidity of a soil suspension. The application of 30 m³ ha^?1 of AD decreased the wettability of the sandy sand as compared to the untreated soil, while the wettability of the loamy sand remained unaffected by the digestate amendment. The amount of RDC was higher in the loamy sand compared to the sandy sand, but the AD‐amended soil did not exhibit a significant change in dispersibility. While the loamy soil exhibited acidification of the soil after digestate application, the sandy soil showed an alkalinization of soil columns. Overall, the soil texture was identified to be a main factor controlling the effect of the digestates on soil properties. The results of this lab study showed that this study can be used as a first approach for the quantification of digestate amendment under practical conditions.     

Effect of Different Manganese Concentrations during in vitro Maturation of Bovine Oocytes on DNA Integrity of Cumulus Cells and Subsequent Embryo Development

Manganese (Mn) is a trace element present in forages and cereals, and its concentration depends on soil status. Manganese deficiency in cattle, goats and ewes not only impairs oestrous cycle but reduces calf birth weight. The achievement of the first oestrus is delayed, and more attempts are necessary to obtain a successful conception. This study was conducted to investigate the effect of the availability of supplemental Mn during IVM on DNA damage of cumulus cells and total glutathione (GSH) content in oocytes and cumulus cells. The effect of supplementary Mn during IVM on subsequent embryo development was also studied. The results reported here indicate (i) DNA damage in cumulus cells decreased with 0, 2, 5 and 6 ng/ml Mn supplementation during IVM (p < 0.05). (ii) Intracellular GSH‐GSSG content increased (p < 0.01) with different Mn concentrations in oocytes and cumulus cells. Also, cumulus cell number per cumulus oocyte‐complexes (COC) did not differ either before or after IVM. (iii) Addition of Mn to maturation medium resulted in similar cleavage rates (p > 0.05) at 0, 2, 5 and 6 ng/ml Mn. However, subsequent embryo development to blastocyst stage was significantly higher (p < 0.01) in oocytes matured with 5 and 6 ng/ml Mn. (iv) There was also an increase (p < 0.05) in mean cell number per blastocyst obtained from oocytes matured with 5 and 6 ng/ml respect to zero Mn (IVM alone) and 2 ng/ml Mn. This study provides evidence that optimal embryo development to the blastocyst stage was partially dependent on the presence of Mn during IVM. Moreover, the availability of Mn during oocyte maturation ensures ‘normal’ intracellular GSH content in COCs and protects DNA integrity of cumulus cells.     

Distribution of prion protein genotypes in breeds of sheep in New Zealand

AIM: To use an established high through-put genotyping procedure to gain an estimate of the frequency of alleles of the prion protein (PrP) gene in some common sheep breeds in New Zealand.

METHODS: Using a genotyping procedure based on matrix-assisted laser desorption ionisation-time of flight (MALDI-TOF), DNA samples from 3,024 sheep from New Zealand, including breeds such as Romney, Texel, Coopworth, Merino and mixedbreed, were isolated, genotyped and the results analysed.

RESULTS: The 15 scrapie genotypes commonly reported, and derived from the five commonly reported allelic variants (ARR, ARQ, AHQ, ARH and VRQ), were all observed in the samples analysed. The estimates were indicative of the frequencies in the population of alleles present in breeds of sheep in New Zealand. There was a significant difference between the frequencies of alleles between breeds, but the ARQ, followed by the ARR allele, were, except in Carwell sheep, the most common alleles present.

CONCLUSION: This study gave an indication of the percentages of PrP gene alleles in sheep in New Zealand, including data previously unreported from breeds in this country. It is of interest because of the relatively large size of the sheep population in New Zealand compared with many countries, and it provides some useful information on the genetic susceptibility or resistance of the sheep population in New Zealand to scrapie. The frequencies of the alleles can be different for an individual breed compared between countries.     

Influence of comb parameters on picking properties for chamomile flowers (Matricaria recutita)

Tools in the form of a comb are generally used to harvest chamomile flowers. The combs can be hand-operated or machine-based. To achieve good picking quality and low losses, the comb parameters have to be optimized. In this paper, the influence of comb thickness (0.5 mm, 1.0 mm and 2 mm) and the shape of the gap between the tines (3 variants) on picking force and remaining stalk length was investigated for German chamomile (Matricaria recutita) under lab conditions. To ensure that the stalks glide along the gap to the ground of the picking blade, the inclination angle was adjusted to be 45° from the blade plane in the direction of movement. For each of the 9 variants, 100 breaking tests were performed. To estimate the breaking force, a specific tensile force measuring instrument was used. The mean breaking strength of the stalks for the investigated 9 variants ranged from 3.62 N mm⁻² to 4.66 N mm⁻². In about 50% of the tests, the comb parameters had no influence because stalks broke outside of the contact point with the comb at the weakest section of the stalk. In conclusion, the picking quality of involved test blades was partially influenced by the thickness of the blade, the shape of the gap between the teeth and substantially by the strength of the individual chamomile stalks.     

Shrinkage potential and pore shrinkage capacity of differently developed volcanic ash soils under pastures in southern Chile

The drying process of volcanic ash soils often results in the formation of shrinkage cracks with consequences for their physical properties (i.e., decrease of water retention capacity) and land use management. This study presents the soil water characteristics and shrinkage behaviour (shrinkage phases in terms of void and moisture ratio), the shrinkage potential (COLE index), and the pore shrinkage capacity (PSI) for 5 and 20 cm depth of a Haplic Arenosol (tephric) and two Silandic Andosols under pasture management along a soil gradient from the Andean mountains to the coastal range in southern Chile. The main focus of the presented study is on the effect of soil development in conjunction with the weathering of volcanic ash soils on the shrinkage properties. The water retention and shrinkage curves were continuously determined for undisturbed soil samples (100 cm³) during a drying process under laboratory conditions. In addition, the shrinkage curve data were modelled to distinguish different shrinkage zones. The results suggest that the investigated soil properties vary depending on soil development. The more developed Andosols had higher total porosities (up to 70 cm³ cm^?3) than the less developed Arenosol. The shrinkage behaviour of the Haplic Arenosol showed a wide structural shrinkage phase, whereas the Silandic Andosols revealed a more pronounced proportional shrinkage phase, which is related to the pore size distribution. In addition, wide and narrow coarse pores of the Haplic Arenosol and medium and fine pores of the Silandic Andosols determine the shrinkage potential (COLE) and the pore shrinkage capacity, respectively. The finer‐grained and organic matter‐rich Andosols indicate a higher COLE index (> 0.03–0.09) compared to the Arenosol (≤ 0.03). The pore shrinkage index (PSI) of the total pores (TP) varied significantly (P < 0.05) with values of 0.042–0.149 in 5 cm depth and 0.04–0.091 in 20 cm depth of sites 1–3, respectively.In summary, the shrinkage potential and pore shrinkage capacity are positively correlated to the organic carbon content and decrease with increasing dry bulk density. The study points out a higher risk of soil degradation due to irreversible drying processes for the more clayey and allophane containing Andosols than the Arenosol.     

The prevalence and genetic diversity of Campylobacter spp. in domestic 'backyard' poultry in Canterbury, New Zealand

Campylobacteriosis is the most commonly notified illness in New Zealand. Whilst the importance of commercial poultry in campylobacteriosis is well established, little is known about the possible role of chickens kept at home as a direct animal/faecal contact or consumption exposure pathway. The aim of this study was to determine the prevalence and genetic diversity of Campylobacter spp. in domestic backyard chicken flocks in the Canterbury region of New Zealand. Poultry faecal samples were collected from 35 domestic 'backyard' poultry flocks from urban and rural properties around the Canterbury Region of New Zealand. A total of 291 samples were collected and tested for the presence of thermotolerant Campylobacter spp. and positive isolates were analysed using pulsed-field gel electrophoresis (PFGE) using both SmaI and KpnI enzymes. There was a high prevalence of Campylobacter spp. with 86% of flocks testing positive. Campylobacter jejuni alone, Campylobacter coli alone and both C. jejuni and C. coli were detected in 20 (57%), 2 (6%) and 8 (23%) of the flocks respectively. SmaI/KpnI PFGE analysis identified 50 different genotypes across the 35 flocks. Genotype diversity richness was highest on the lifestyle block and farm properties with 43 different genotypes isolated, whilst urban properties displayed the least richness with 12 genotypes isolated. Rural flocks tended to have more different genotypes in a given flock than urban flocks. Comparison of the genotypes with the PulseNet Aotearoa Campylobacter database showed that 28 of the genotypes had previously been isolated from human cases of campylobacteriosis. Many of these were also indistinguishable from Campylobacter spp. previously isolated from retail chicken. Therefore, contact with backyard poultry or their faecal material is a potential additional infection pathway outside of exposure to the established pathways associated with the consumption of Campylobacter-contaminated commercial meat or foods cross-contaminated from contaminated poultry.     

Soil compaction and stress propagation after different wheeling intensities on a silt soil in South-East Norway

The objective of this study was to evaluate the effect of wheeling with two different wheel loads (1.7 and 2.8?Mg) and contrasting wheeling intensities (1x and 10x) on the bearing capacity of a Stagnosol derived from silty alluvial deposits. Soil strength was assessed by laboratory measurements of the precompression stress in topsoil (20?cm) and subsoil (40 and 60?cm) samples. Stress propagation, as well as elastic and plastic deformation during wheeling were measured in the field with combined stress state (SST) and displacement transducers (DTS). We also present results from soil physical analyses (bulk density, air capacity, saturated hydraulic conductivity) and barley yields from the first two years after the compaction. Although the wheel loads used were comparatively small, typical for the machinery used in Norway, the results show that both increased wheel load and wheeling intensity had negative effects on soil physical parameters especially in the topsoil but with similar tendencies also in the subsoil. Stress propagation was detected down to 60?cm depth (SST). The first wheeling was most harmful, but all wheelings led to accumulative plastic soil deformation (DTS). Under the workable conditions in this trial, increased wheeling with a small machine was more harmful to soil structure than a single wheeling with a heavier machine. However, the yields in the first two years after the compaction did not show any negative effect of the compaction.