Pathogenic and coat protein characterization confirming the occurrence of Bean common mosaic virus on common bean (Phaseolus vulgaris) in Kashmir,India

Bean common mosaic virus (BCMV), belonging to the family Potyviridae, is a serious pathogen of common bean (Phaseolus vulgaris L.) causing considerable economic losses owing to seed, sap and aphid transmissibility. The viral nature of the test isolates and identity of the virus as BCMV were confirmed by mechanical transmission and DAS-ELISA using BCMV antiserum. Pathogenic variability studies in BCMV infecting common bean (Phaseolus vulgaris L.) in Jammu and Kashmir (a northwestern Himalayan state of India), revealed the existence of three pathogroups – PG-I, PG-II and PG-VII, accommodating five strains (NL-1, NL-1n, NL-4, NL-7 and NL-7n). Comparative sequence analysis of coat protein gene revealed that the strains NL-1, NL-4 and NL-7 shared more than 90% amino acid sequence homology with other BCMV isolates from other countries. DAG motif as well as BCMV specific conserved motif MVWCIDN were present in all the three strains. Phylogenetic analysis of coat protein also clustered them in the BCMV group. This study confirmed the occurrence of BCMV and its strains on common bean in Kashmir.     

Epidemiology, pathology, immunology and diagnosis of bovine farcy: a review

Bovine farcy (which is caused by Mycobacterium farcinogenes and Mycobacterium senegalense) is a chronic suppurative granulomatous inflammation of the skin and lymphatics of cattle and is seen mostly in sub-Saharan Africa. It is not yet certain whether Nocardia farcinica causes cutaneous nocardiosis (farcy) in animals that mimics bovine farcy. Epidemiological data have steadily reported finding bovine farcy in adult cattle of the transhumance pastoralist tribes of the Sahel and the Sudanian savannah zones. M. farcinogenes and or M. senegalense do not affect other domestic or non-domestic animals; it is not known whether these bacteria are zoonotic. The disease--once widespread in many regions--has disappeared from some countries historically known to have it. Reports of bovine farcy prevalence seem to be linked to the existence of survey initiatives by governments and diagnostic capabilities in each country. Farcy causes economic loss due to damaged hides and also is a public-health burden (because the lymphadenitis due to farcy resembles the lesions of bovine tuberculosis in carcasses and the meat is considered inappropriate for human consumption). The current literature is deficient in establishing definitely the prevalence, transmission patterns, and risk factors of bovine farcy. Ixodid ticks transmit other skin diseases (such as dermatophilosis) and might play a role in bovine farcy (given the similarity in the bio-physiology and geographic distribution of the disease). In addition, the tick-resistance of cattle breeds such as the N'Dama, Fulani or the Nilotic might explain their resistance to bovine farcy. Apart from the judicious use of conventional smear-and-culture methods, few diagnostic tests have been developed; the molecular and serological tests have not been evaluated for reproducibility and accuracy. This review points out aspects of bovine farcy that need further research and updates available data on the prevalence, distribution, risk factors, economic and public health implications, diagnosis, and control.     

Estimation of demand for wood panels in Iran by the year of 2012

Considering increasing rate of Iran population and consumption of wood panels, the authors investigated the per capita consumption of wood panels during the years from 1997 to 2007. The exponential smoothing method was used to obtain a per capita consumption pattern of wood panels in Iran for estimating demand of wood panels by the year of 2012. Results show that the consumption of particleboard, fiberboard, and medium density fiberboard in Iran will increase by 33%, 72% and 107 %, respectively, by the year of 2012; however, the consumption of plywood will increase only by 7% by 2012. The deficient amount of wood panels in Iran is estimated over 1400000 m3. The results of this study provide the technique reference for planners of wood panel industries in Iran in capital investment decisions.     

Spatially distributed monthly reference evapotranspiration derived from the calibration of Thornthwaite equation: a case study, South of Iran

The Penman-Monteith equation is the most common method for estimating reference crop evapotranspiration (ET_o). Using this method reqiures many different meteorological data, yet few stations with adequate meteorological data may exist in a region. Setting up a station that records the required data for Penman-Monteith equation is expensive. Alternatively, the Thornthwaite equation is a simpler method for estimating ET_o since it is a temperature-based method. In this study, the Thornthwaite equation was spatially calibrated based on the Penman-Monteith method (as the standard and reference method to compute ET_o) for every month of the year, using the meteorologica data of seven synoptic weather stations in Fars province, and seven synoptic stations outside the Fars province. The Thornthwaite equation using effective temperature that has been introduced recently in other studies was used (Camargo et al. in Revista Brasileira de Agrometeorologica 7:251–257, 1999). For this purpose a calibration coefficient k must be determined. The results of the spatial and temporal calibration of the new approach using the Thornthwaite equation showed that for each station different k values should be used monthly. Generally, the k values fluctuated between 0.55 and 1.12, and the mean RMSE for all stations was less than 1 mm day⁻¹, which showed good and reliable agreement between the ET_o estimations obtained from the Penman-Monteith and calibrated Thornthwaite equations. Depending on the geographical location of each station, spatial distribution maps of monthly k values were created for the study area using the inverse distance weighting (IDW) interpolation method. It is therefore possible to estimate monthly ET_o using the appropriate k map and the Thornthwaite equation for different regions of study area instead of using the Penman-Monteith method. This case study showed that the same analysis might be used for the other parts of the country or any part of the world and would result in efficient scheduling of water resources for agriculture.     

Non-parametric measures of phenotypic stability in chickpea genotypes (<Emphasis Type="Italic">Cicer arietinum</Emphasis> L.)

Multi-environment trials (MET) play an important role in selecting the best cultivars and/or agronomic practices to be used in future years at different locations by assessing a cultivar's stability across environments before its commercial release. Objective of this study is to identify chickpea (Cicer arietinum L.) genotypes that have high yield and stable performance across different locations. The genotypes were developed by various breeders at different research institutes/stations of Iran and the International Center for Agricultural Research in Dray Areas (ICARDA), Syria. Several statistical methods were used to evaluate phenotypic stability of these test chickpea genotypes. The 17 genotypes were tested at six different research stations for two years in Iran. Three non-parametric statistical test of significance for genotype × environment (GE) interaction and ten nonparametric measures of stability analyses were used to identify stable genotypes across the 16 environments. The non-parametric measures (Kubinger, Hildebrand and Kroon/Van der) for G × E interaction were highly significant (P < 0.01), suggesting differential responses of the genotypes to the test environments. Based on high values of nonparametric superiority measure (Fox et al. 1990) and low values of Kang's (1988) rank-sum stability parameters, Flip 94-123C was identified as the most stable genotype. These non parametric parameters were observed to be associated with high mean yield. However, the other nonparametric methods were not positively correlated with mean yield and were therefore not used in classifying the genotypes. Simple correlation coefficients using Spearman’s rank correlation, calculated using ranks was used to measure the relationship between the stability parameters. To understand the nature of relationships among the nonparametric methods, a hierarchical cluster analysis based on non weighted values of genotypes, was performed. The 10 stability parameters fell into three groups.     

Comparative Study of Onion (Allium cepa) and Leek (Allium ampeloprasum): Identification of Organosulphur Compounds by UPLC-QTOF/MS and Anticancer Effect on MCF-7 Cells

Onion (Allium cepa) and leek (Allium ampeloprasum var. porrum) are common herbs and vegetables found in our daily life. It belongs to the genus Allium, which is usually known for their high antioxidant and anticancer properties. Medical researchers highly recommend the exploitation of herbs and plants as alternative ways in the treatment of cancer. This research was designed to study the anticancer effects of onion and leek extracts on MCF-7 human breast cancer cell. Crude extracts of ethanol, methanol, and water of onion and leek were obtained by maceration. MCF-7 cells were cultured in complete media at 37 °C and subjected to different treatments that involved varying concentrations (10, 50, and 100 μg/mL) of onion and leek extracts for 24, 48, and 72 h of incubation. The percentage of cell viability and the concentration of extracts on MCF-7 cells were determined using MTT assay. The water leek extract proved to be the most effective extract at 50 μg/mL, whereby it showed a significant inhibition ability due to the presence of entadamide A-β-D-glucopyranoside as identified by ultra-performance liquid chromatography-quadrupole/time-of-flight mass spectrometry (UPLC-QTOF/MS). Further studies about the mechanism of both extracts in causing cell death and the determination of the presence of other bioactive compounds in the extracts are needed.

     

Breeding for pre-harvest sprouting resistance in bread wheat under rainfed conditions

Pre-harvest sprouting in wheat is the germination of seeds within the spikes when rains occur after or during grain ripening, which occurs commonly in the barani tract of Pakistan. Therefore, 10 cultivars and five advanced lines of spring bread wheat were evaluated for pre-harvest sprouting resistance. After natural rainfall, seeds were immediately collected from the wet spikes and tested for germinating ability. Three different germination tests were applied to hand-threshed seed: (1) spikes threshed on the day of sampling and germination tested immediately, (2) spikes threshed on the day of sampling and germination tested 1 week later, and (3) spikes threshed 1 week after sampling and germination test immediately after threshing. Seeds and spikes kept for 1 week were place on blotting paper at room temperature. Cultivars BARS-09, 09FJ17, Doukkala-12, NARC-09 and Ouassou-20 exhibited higher sprouting resistance while other genotypes were susceptible to pre-harvest sprouting in each of the three tests. A diallel crossing was conducted with six susceptible and two resistant genotypes to assess the genetic behavior of pre-harvest sprouting resistance. The combining ability (CA) demonstrated a higher proportion of additive genetic effects for sprouting resistance, because of higher variance of general and specific CA for both parameters under study. Doukkala-12 and BARS-09 showed increased pre-harvest sprouting resistance in their F₁ descendants.     

Insight into the origin of common bean (<Emphasis Type="Italic">Phaseolus vulgaris</Emphasis> L.) grown in the state of Jammu and Kashmir of north-western Himalayas

Common bean (Phaseolus vulgaris L.) is considered as one of the principal grain legume crops grown in north-western Himalayan state of Jammu and Kashmir (J&K), India. Huge diversity has been observed for this crop in state Jammu and Kashmir. The hilly regions of the state J&K are famous for producing high quality, tasty and highly flavoured beans. In order to characterise this huge diversity and trace the origin of common bean, systematic efforts have been made for the first time in collection, evaluation and characterization of bean collection from Jammu & Kashmir. A set of 428 common bean lines were initially collected/procured and based on cluster analysis using few qualitative traits/site of collection, a diverse set of 96 lines was selected. The PCR assay for phaseolin locus led to the characterization of 96 lines into Meso-american and Andean types. Out of 96 lines tested, 45 possessed “S” type phaseolin and 51 possess “T” type phaseolin. The ITS region of selected local and exotic lines was Sanger sequenced and the sequence analysis of ~ 800 bp long region revealed the presence of 12 SNPs including one promising SNPs showing significant association with phaseolin patterns. The clustering based on ITS sequence data led to the clear cut separation of common bean lines into two distinct clusters based on their phaseolin types. The results of the present study helped to gain insights into the origin of common bean landraces grown in state of J&K, India.     

Effect of end connections on mid-span load capacity of laminated particleboard bookshelves

The purpose of the study was to determine the effect of joints on the mid-span load capacity of bookshelves made from laminated particleboard. Twenty types of joints were selected based on their popularity in the cabinet-making industry. Results showed that highest mid-span load capacities were obtained with glued groove joints that included glued wooden dowels. Overall, highest mid-span load capacities were obtained with fixed shelf-joint constructions, whereas lower capacities were obtained with adjustable constructions. Based on its high-load capacity and ease of construction, the spline joint appears best-suited for use by most craftsmen. Statistical lower tolerance limits were used to take capacity variability into account for design purposes. The 75% confidence|75% proportion limits for the glued wood spline and glued fiberboard spline joints were 94% and 93% of average, respectively.