Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps

The genome organizations of eight phylogenetically distinct species from five mammalian orders were compared in order to address fundamental questions relating to mammalian chromosomal evolution. Rates of chromosome evolution within mammalian orders were found to increase since the Cretaceous-Tertiary boundary. Nearly 20% of chromosome breakpoint regions were reused during mammalian evolution; these reuse sites are also enriched for centromeres. Analysis of gene content in and around evolutionary breakpoint regions revealed increased gene density relative to the genome-wide average. We found that segmental duplications populate the majority of primate-specific breakpoints and often flank inverted chromosome segments, implicating their role in chromosomal rearrangement.     

Trench-parallel anisotropy produced by foundering of arc lower crust

Many volcanic arcs display fast seismic shear-wave velocities parallel to the strike of the trench. This pattern of anisotropy is inconsistent with simple models of corner flow in the mantle wedge. Although several models, including slab rollback, oblique subduction, and deformation of water-rich olivine, have been proposed to explain trench-parallel anisotropy, none of these mechanisms are consistent with all observations. Instead, small-scale convection driven by the foundering of dense arc lower crust provides an explanation for the trench-parallel anisotropy, even in settings with orthogonal convergence and no slab rollback.     

Origin and evolution of prebiotic organic matter as inferred from the Tagish Lake meteorite

The complex suite of organic materials in carbonaceous chondrite meteorites probably originally formed in the interstellar medium and/or the solar protoplanetary disk, but was subsequently modified in the meteorites' asteroidal parent bodies. The mechanisms of formation and modification are still very poorly understood. We carried out a systematic study of variations in the mineralogy, petrology, and soluble and insoluble organic matter in distinct fragments of the Tagish Lake meteorite. The variations correlate with indicators of parent body aqueous alteration. At least some molecules of prebiotic importance formed during the alteration.     

Effect of dextransucrase cellobiose acceptor products on the growth of human gut bacteria

The selective fermentation by human gut bacteria of gluco-oligosaccharides obtained from the reaction between the glucosyl group of sucrose and cellobiose, catalyzed by dextransucrases (DSR) from Leuconostoc mesenteroides , has been evaluated. Oligosaccharides were fractionated according to their molecular weight, and their effect on the growth of different bacterial groups was studied. To determine the structure (position and configuration of glycosidic linkages)-function relationship, their properties were compared to those of DSR maltose acceptor products (DSRMal) and of recognized prebiotic carbohydrates (fructo-oligosaccharides, FOS). Cellobiose acceptor products (DSRCel) showed bifidogenic properties similar to those of FOS. However, no significant differences related to molecular weight or isomeric configurations were found for DSRCel and DSRMal products.     

Evaluating simultaneous impacts of three anthropogenic effects on a floodplain-dwelling marsupial Antechinus flavipes

Regulation of river flows has altered floodplain ecosystems around the world. Floods are less frequent, which leads to reduction of favourable environmental conditions for many terrestrial and aquatic organisms adapted to natural flooding regimes. In Australia, the Murray River floodplains have been subjected to decline in inundations, to extensive logging and to removal of fallen timber. The yellow-footed antechinus (Antechinus flavipes) is the only small, native, ground-dwelling/semi-arboreal mammal on most floodplains of south-eastern Australia, yet the effects of floods on its population dynamics largely are unknown. Here, we found positive effects of proximity to flooding, higher woodloads and of abundance of large, hollow-bearing trees on antechinus numbers. Mean trapping rates of antechinuses were lowest in 2003 following a 3-year period with no inundation, higher in 2004 following the first breeding season during a small, controlled flood in 2003, and higher again in 2005, following a small, controlled flood in 2004. In 2004 and 2005, trapping rates declined with distance from floodwaters. This study provides evidence for the benefits of using management flows to inundate floodplains, conserving large trees and ensuring high woodloads in floodplains for sustaining populations of the yellow-footed antechinus.     

The analysis of vegetation for total mercury

Over four hundred vegetation samples were collected for total Hg determination as part of a biogeochemical survey in the Precambrian Shield region near Huntsville, Ontario. An objective of the survey was to obtain accurate data describing the spatial and temporal variation of Hg concentrations in vegetation. Five tree species, clubmosses, mosses, lichen and fungi were collected along three transects each 8 to 10 km long. The samples were digested using a hot H₂SO₄/HNO₃ mixture followed by cold-vapor AAS detection. Very low detection limits (less than 1.0 ng g⁻¹) were achieved by performing the analyses in a clean, Hg-free laboratory. The Hg concentration of coniferous needles did not vary significantly over eight weeks of the summer, but did vary significantly between first and second year growth. In all tree species examined, Hg concentrations in needles/leaves were two to three times as high (by dry weight) as that in twig tissue from the same branch. Differences in Hg content between tissues of different types and ages constituted a major source of within-site variation between plants of the same species.     

Identification of fonofos metabolites in Latuca sativa, Beta vulgaris, and Triticum aestivum by packed capillary flow fast atom bombardment tandem mass spectrometry

The metabolism of fonofos, a thiophosphonate insecticide, was investigated in mature lettuce (Latuca sativa), beet (Beta vulgaris), and wheat (Triticum aestivum). Six new metabolites were identified by LC-MS and LC-MS-MS analysis using fast atom bombardment (FAB) and packed capillary LC columns with application of the on-column focusing technique. These methods provided the sensitivity required to identify unknown metabolites that were present in the mature plants at only 20-230 ppb. Structural elucidation was facilitated by use of fonofos labeled with both carbon-14 and carbon-13 in the phenyl ring. In all three plants fonofos was converted to a glucose conjugate of thiophenoxylactic acid. Oxidation of the glucose conjugate gave isomeric sulfoxides in all species examined. Thiophenoxylactic acid was found esterified to malonic acid in lettuce. In beets, S-phenylcysteine was found as its malonic acid amide. A second metabolite unique to beets was N-(malonyl)-[2[(ethoxyethylphosphinothionyl)oxy]phenyl]cysteine. This novel structure was confirmed by synthesis.