Assessment and monitoring of soil quality using near-infrared reflectance spectroscopy (NIRS)

Soil degradation processes have dramatically increased in their extent and intensity over the last decades. Progressively, actions have been taken in order to evaluate and reduce the major threats that have already wreaked havoc on soil conditions. Efficient and standardized monitoring of soil conditions is thus required but soil quality research is facing an important technological challenge because of the number of properties involved in soil quality. The objective of the present review is to examine critically the suitability of near-infrared reflectance spectroscopy (NIRS) as a tool for soil quality assessment. We first detail the soil quality-related parameters (chemical, physical and biological) that can be predicted with NIRS through laboratory measurements. The ability of imaging NIRS (airborne or satellite) for mapping a minimum data set of soil quality is also discussed. Then we review the most recent research using soil reflectance spectra as an integrated measure of soil quality, from global site classification to the prediction of specific soil quality indices. We conclude that imaging NIRS enables the direct mapping of some soil properties and soil threats, but that further developments to solve several technological limitations identified are needed before it can be used for soil quality assessment. The robustness of laboratory NIRS for soil quality assessment allows its implementation in soil monitoring networks. However, its routine use requires the development of international soil spectral libraries that should become a priority for soil quality research.     

Effects of chromium on the nutrient element content and morphology of tomato

An hydroponic experiment was conducted to study the effects of chromium (Cr³⁺) on the distribution of nitrogen (N), phosphorus (P), potassium (K), sodium (Na), calcium (Ca), magnesium (Mg), and Cr in the plant, and the growth and yield of a tomato plant. Three Cr treatments were established (0, 50, and 100 mg Cr/L in a nutrient solution). In general, the nutrient element concentration in stems and branches was significantly affected by the Cr treatments. Chromium accumulated preferentially in the roots and low transport was detected to the aerial parts. Growth was diminished due to Cr presence in the nutrient solution. Total yield was not affected, however the number of fruits was diminished and the mean fresh weight of fuit increased with each increment of Cr in the nutrient solution. Chromium was not detected in the edible part (fruit) of the plant.     

Morphogenesis in leaf and single-cell cultures of mature Juniperus oxycedrus

Single cells were mechanically isolated from leaf-derived callus of mature Juniperus oxycedrus L. These cells divided and gave rise to callus when plated on medium containing growth regulators. Best plating efficiency was obtained on a modified Schenk and Hildebrandt medium supplemented with 0.6 micro M 2,4-dichlorophenoxyacetic acid and 100 mg l(-1) casein hydrolyzate. Although single-cell-derived callus showed poor morphogenic potential, both adventitious shoots and embryogenic tissues differentiated from the callus. We also achieved induction of somatic embryogenesis in leaf explants of mature J. oxycedrus trees cultured in the presence of 6.0 or 10.0 micro M 2,4-dichlorophenoxyacetic acid or picloram. Frequency of embryogenic callus ranged from 6 to 18%; however, under the culture conditions tested, isolated embryos failed to develop into plants.     

Changes in fruit sugar concentrations in response to assimilate supply,metabolism and dilution: a modeling approach applied to peach fruit (Prunus persica)

The influence of assimilate supply, metabolism and dilution on sugar concentrations in the mesocarp of peach (Prunus persica (L.) Batsch) fruit during the main stage of fruit enlargement was analyzed with the SUGAR model of Génard and Souty (1996). The model predicts the partitioning of carbon into sucrose, sorbitol, glucose and fructose in the mesocarp of peach fruit. Based on measured data and the model, we determined values for the relative rates of sugar transformation. These rates were constant, varied with time or varied with relative fruit growth rate, depending on the type of sugar. Equations were derived to describe these rates and incorporated into the SUGAR model. The model simulated the effects of changing assimilate supply and fruit volume on sugar concentrations. The set of equations for the SUGAR model was rewritten to include the three components influencing sugar concentrations: assimilate supply, metabolism and dilution. The sugar types differed in sensitivity to these components. Sucrose was highly sensitive to changes in assimilate supply and to the dilution effect; it was not subject to intense metabolic transformation. Sorbitol was the most important carbohydrate in fruit metabolism, which explains why the sorbitol concentration was always low despite the strong positive effect of assimilate supply. The reducing sugars constituted a transitory storage pool and their concentrations were closely related to metabolism.     

Impact of weather variables and season on sporulation of Phytophthora pluvialis and Phytophthora kernoviae

Phytophthora pluvialis and Phytophthora kernoviae are the causal agents of important needle diseases on Pinus radiata in New Zealand. Little is known about the epidemiology of the diseases, making the development of control strategies challenging. To investigate the seasonality and climatic drivers of sporulation, inoculum traps, consisting of pine fascicles floating on water in plastic containers, were exchanged fortnightly at five sites in P. radiata plantations between February 2012 and December 2014. Sections of needle baits were plated onto selective media and growth of Phytophthora pluvialis and P. kernoviae recorded. To explore the generalizability of these data, they were compared to detection data for both pathogens from the New Zealand Forest Health Database (NZFHDB). Further, equivalent analyses on infection of Rhododendron ponticum by P. kernoviae in Cornwall, UK allowed the comparison of the epidemiology of P. kernoviae across different host systems and environments. In New Zealand, inoculum of P. pluvialis and P. kernoviae was detected between January–December and March–November, respectively. Inoculum of both species peaked in abundance in late winter. The probability of detecting P. pluvialis and P. kernoviae was greater at lower temperatures, while the probability of detecting P. pluvialis also increased during periods of wet weather. Similar patterns were observed in NZFHDB data. However, the seasonal pattern of infection by P. kernoviae in the UK was the opposite of that seen for sporulation in New Zealand. Phytophthora kernoviae was likely limited by warmer and drier summers in New Zealand, but by colder winter weather in the UK. These results emphasize the importance of considering both environmental drivers and thresholds in improving our understanding of pathogen epidemiology.     

Detection of nitrogen cycle genes in soils for measuring the effects of changes in land use and management

Nutrient cycles represent key links between above- and below-ground ecosystems. But obscurity of functional diversity of nutrient-cycling organisms has constrained our understanding. We studied the microbial ecology of the nitrogen cycle using bacterial genes involved in nitrification (amoA), denitrification (napA) and nitrogen fixation (nifH) from areas with highly contrasting soils, climates and land management practices within Australia. Agricultural soils had greater frequency of occurrence of nitrogen cycling genes compared with areas of adjacent remnant native vegetation. The relative abundance of the nitrate reductase gene, napA, increased following the addition of urea to soils, indicating a pulse-response of nitrate-reducing bacteria. Laboratory perturbation of soils with highly saline water had no effect on the frequency of functional gene detection, but following perturbation of soils with antibiotics, the presence of amoA fell below detectable levels while levels of ammonia increased over time. In contrast, nifH and napA were detected in some soils for the duration of the perturbation experiments. This observed positive relationship between gene abundance and respective process rates was indicative of an active bacterial population. As such, detection and quantification of bacterial genes involved in the nitrogen cycle represents a model system for gaining insights to soil microbial diversity and ecosystem function.     

Molecular typing of sand fly species (Diptera, Psychodidae, Phlebotominae) from areas endemic for Leishmaniasis in Ecuador by PCR-RFLP of 18S ribosomal RNA gene

Surveillance of the distribution of sand fly species is important for prediction of the risk and expansion of Leishmania infection in endemic and surrounding areas. In the present study, a simple and reliable method of typing New World Lutzomyia species circulating in endemic areas in Ecuador was established by using polymerase chain reaction (PCR)-restriction fragment length polymorphism (RFLP) technique. PCR-RFLP of 18S ribosomal RNA (rRNA) genes with the restriction enzyme AfaI and subsequently HinfI successfully identified seven sand fly species in nine endemic areas in Ecuador. Although intraspecific genetic-diversity affecting the RFLP-patterns was detected in a species, the patterns were species specific. The method promises to be a powerful tool for the classification of New World Lutzomyia species.     

Global mineralogical and aqueous mars history derived from OMEGA/Mars Express data

Global mineralogical mapping of Mars by the Observatoire pour la Mineralogie, l'Eau, les Glaces et l'Activité (OMEGA) instrument on the European Space Agency's Mars Express spacecraft provides new information on Mars' geological and climatic history. Phyllosilicates formed by aqueous alteration very early in the planet's history (the "phyllocian" era) are found in the oldest terrains; sulfates were formed in a second era (the "theiikian" era) in an acidic environment. Beginning about 3.5 billion years ago, the last era (the "siderikian") is dominated by the formation of anhydrous ferric oxides in a slow superficial weathering, without liquid water playing a major role across the planet.