Regrowth forests on abandoned agricultural land: A review of their habitat values for recovering forest fauna

Human land use has modified the structure and function of terrestrial landscapes throughout much of the world, with cropping and livestock grazing the major drivers of landscape change. In many tropical, sub-tropical, temperate and Mediterranean regions, regrowth forests regenerate naturally on abandoned agricultural land if human disturbance declines. With the exception of some tropical forest literature, the broader ecological and conservation literature has largely ignored the potential of regrowth forests to facilitate passive landscape restoration and the recovery of fauna communities in fragmented agricultural landscapes. This paper addresses this deficiency by reviewing the available global evidence of fauna recovery in regrowth forest from 68 papers, identifying the main gaps in current knowledge, and providing directions for further research. The majority of reviewed studies focus on regrowth in tropical regions, which often contain large areas of mature forest. Species’ utilisation of regrowth forest is highly variable and is particularly influenced by land-use history, an important determinant of the structural and compositional characteristics of regrowth forests. While site-scale (<1 ha) forest structure and floristic diversity were frequently studied, only 11 studies considered the spatial configuration and context of habitat patches and just two studies explicitly considered landscape structure. Based on this review, six key research questions are posed to direct future research on this important issue. We conclude that a broader perspective of the role of regrowth forest in the landscape is required if we are to realise the potential benefits of regrowth forest for passive landscape restoration and fauna conservation and recovery.     

Development of a method for Bayesian nonparametric ROC analysis with application to an ELISA for Johne's disease in dairy cattle

Six hundred and sixty-eight dairy cattle were tested for Johne's disease using a direct-fecal real-time polymerase chain reaction (rt-PCR), fecal culture, and serum enzyme-linked immunosorbent assay (ELISA). Likelihood ratios (LRs) were estimated for five categories of sample-to-positive (S/P) values for the ELISA: <0.1, 0.1-0.249, 0.25-0.399, 0.4-0.999, > or =1.0. The statistical method assumed a single multinomial model for cross-classified rt-PCR, fecal culture results, and ELISA category strata. Conditional dependence between tests was investigated by the inclusion of all possible pairwise dependence terms. Sensitivity covariance between ELISA and fecal culture was estimated as 0.017. Estimates for the accuracy of the ELISA at the usual cutoff of 0.25S/P was 67.2% and 95.2% for sensitivity and specificity, respectively for a model that adjusted for the dependence between ELISA and fecal culture. The area under the receiver-operating characteristic (ROC) curve (95% probability interval) for the ELISA was 0.867 (0.796, 0.928). Point estimates for likelihood ratios (95% probability intervals) were 0.24 (0.11, 0.38), 1.52 (0.48, 3.27), 2.49 (0.31, 13.4), 6.33 (2.54, 16.5), and 103 (25.0, 2412) for the categories <0.1, 0.1-0.249, 0.25-0.399, 0.4-0.999, >/=1.0, respectively. Assumptions concerning the underlying distribution of test results for infected and uninfected animals were not necessary and this model can be employed for the general estimation of LRs and ROC curves in absence of knowledge concerning true disease status.     

Charcoal production through selective logging leads to degradation of dry woodlands:a case study from Mutomo District,Kenya

Provision of woodfuel is an important ecosystem service of dry forests and woodlands.However,charcoal production through selective logging of preferred hardwood species has the potential to alter the physiognomic composition of the residual or re-growth woodlands and may lead to their deterioration and degradation.This study,conducted through forest inventory in Mutomo District in Kenya,assessed the impact of charcoal production on unprotected dry woodlands in terms of tree density,targeted species basal area,species richness,evenness and Shannon diversity.The parameters of the disturbed woodlands were evaluated for significant differences with those of the neighbouring protected Tsavo East National Park,which served as a reference for an ecologically undisturbed ecosystem.By evaluating a consequence of tree harvesting for charcoal production,this study confirmed the overall significant differences between the protected and unprotected woodlands in all the tested parameters.To confirm if the differences in the land-covers of the woodlands had any influence on their degradation,all mentioned parameters were compared between the four differentiated classes and their respective control plots in the protected areas.At the "land-cover level",the statistically significant difference in the basal area of tree species preferred for charcoal production between the protected and unprotected open trees confirms that the class with a high density of large mature trees is the prime target of charcoal producers.In addition,there seems to be a general trend of lower values of tree species richness,evenness and Shannon diversity for the unprotected woodlands subjected to charcoal production.On the other hand,the disturbed woodlands display the potential to recover through their comparably high saplings density.The findings make an important contribution to the discourse on the impact of charcoal production in dry woodlands,a topic that is highly controversial among researchers.     

Prevalence of Ehrlichia canis, Anaplasma platys, Babesia canis vogeli, Hepatozoon canis, Bartonella vinsonii berkhoffii, and Rickettsia spp. in dogs from Grenada

To identify the tick-borne pathogens in dogs from Grenada, we conducted a serologic survey for Ehrlichia canis in 2004 (104 dogs) and a comprehensive serologic and molecular survey for a variety of tick-borne pathogens in 2006 (73 dogs). In 2004 and 2006, 44 and 32 dogs (42.3% and 43.8%) were seropositive for E. canis, respectively. In 2006, several tick-borne pathogens were identified by serology and PCR. DNA of E. canis, Anaplasma platys, Babesia canis vogeli, Hepatozoon canis, and Bartonella sp. were identified in 18 (24.7%), 14 (19.2%), 5 (7%), 5 (7%), and 1 (1.4%) dogs, respectively. Six (8.2%) dogs were seropositive for Bartonella vinsonii subsp. berkhoffii. All dogs were seronegative and PCR-negative for Rickettsia spp. Coinfection with two or three pathogens was observed in eight dogs. Partial 16S rRNA E. canis and A. platys sequences were identical to sequences in GenBank. Partial 18S rRNA gene sequences from the Grenadian H. canis were identical to each other and had one possible mismatch (ambiguous base) from H. canis detected from Spain and Brazil. Grenadian B. c. vogeli sequences were identical to B. c. vogeli from Brazil and Japan. All of the detected pathogens are transmitted, or suspected to be transmitted, by Rhipicephalus sanguineus. Results of this study indicate that dogs from Grenada are infected with multiple tick-borne pathogens; therefore, tick-borne diseases should be included as differentials for dogs exhibiting thrombocytopenia, leukopenia, fever, or lethargy. One pathogen, E. canis, is also of potential public health significance.     

Use of Degenerate Primers in a RT-PCR Assay for the Identification and Analysis of Some Filamentous Viruses, with Special Reference to Clostero- and Vitiviruses of the Grapevine

RT-PCR with degenerate primers was used for the screening of the genome of some members of the Closterovirus, Vitivirus and Trichovirus genera. Two sets of primers, targeted to conserved sequences of the heat shock protein 70 homologue of closteroviruses or to the RNA dependent RNA polymerase genes of tricho- and vitiviruses, amplified the expected fragments from total RNA extracts or double-stranded RNAs of infected plants. Amplified cDNAs were cloned, sequenced and phylogenetically analyzed. Results support the allocation of grapevine viruses A, B, D and heracleum latent virus (HLV) in the genus Vitivirus, whereas, the detection of a HSP70 homologue in grapevine leafroll-associated viruses agrees with their assignment in the genus Closterovirus. The use of degenerate primers for the identification of grapevine viruses belonging to Vitivirus and Closterovirus genera is envisaged.     

A rapid technique for screening banana cultivars for resistance to Xanthomonas wilt

The banana Xanthomonas wilt disease (BXW) has threatened the livelihood of millions of farmers in East Africa. Use of resistant varieties is the most cost-effective method of managing this bacterial disease. A reliable and rapid screening method is needed to select resistant banana varieties. An in vitro screening method was developed for early evaluation of Xanthomonas wilt resistance using small tissue culture-grown plantlets. Eight cultivars of banana were screened with sixteen isolates of Xanthomonas campestris pv. musacearum using this method. There were significant differences (P < 0.0001) in susceptibility among the various banana cultivars tested, whereas no significant difference (P = 0.92) in pathogenicity was observed between the pathogen isolates. The cv. Pisang Awak (Kayinja) was found to be highly susceptible and Musa balbisiana resistant. Nakitembe was found to be moderately resistant while cvs Mpologoma, Mbwazirume, Sukali Ndiizi, FHIA-17 and FHIA-25 were susceptible. The susceptibility of these cultivars was further tested in vivo by artificial inoculation of potted plants with similar results. This study shows that an in vitro screening test can serve as a convenient, cheap and rapid screening technique to discriminate BXW-resistant from BXW-susceptible banana cultivars.     

Measurement of acephate and its principal metabolite in leaves by gas-liquid chromatography

A semi-micro method is described for monitoring levels of acephate (O, S-dimethyl acetylphosphoramidothioate) and its principal metabolite, methamidophos (O, S-dimethyl phosphoramidothioate) in leaf material derived from treated, hydroponically grown gerberas (Gerbera jamesonii H. Bollus, ex Hook. f.) To minimise injury to the living leaf, analyses were performed on 13-mm diameter discs punched from the interveinal regions of the lamina. The leaf disc samples were then extracted with ethyl acetate. Clean-up of extracts was accomplished by passing the filtered leaf extracts through glass mini-columns containing carbon + filter aid (2 + 5 by mass). Acephate and methamidophos were eluted from the column with methanol and measured simultaneously by programmed temperature gas chromatography using a thermionic specific detector.     

The distribution of aldicarb and its metabolites between Lumbricus terrestris,water and soil

Aldicarb is taken up by earthworms from aqueous solution to give concentrations in the worms comparable to that in the external aqueous solutions. Uptake from waterlogged soils is similar, but much less aldicarb is taken up from drier soils. Aldicarb sulphoxide [2-methyl-2-(methylsulphinylpropionaldehyde O-methylcar-bamoyloxime], aldoxycarb and oxamyl are poorly taken up, giving concentrations in the worm of about 5% of the external aqueous concentration. In worms, aldicarb is rapidly converted to the sulphoxide which has a half-life in worms of 19 h at 15°C, and 50 h at 5°C.     

Some fluorine-containing pheromone analogues

Two analogues of the aphid alarm pheromone (E)-β-farnesene, a trifluorofarnesene and a difluoro-1-norfarnesene, were found to be highly active and were more readily detectable than the parent compound. For (Z)-hexadec-11-enal, a component of some lepidopteran sex attractant pheromones, replacement of the carbonyl oxygen with a difluoromethyl group to give a difluoroheptadecadiene resulted in loss of activity. A trifluoroacetoxyhexadecanolide was a more volatile analogue of the mosquito oviposition pheromone (?)-(5R,6S)-6-acetoxy-5-hexadecanolide and was highly active.