Cryptic genetic diversity in “widespread” Southeast Asian bird species suggests that Philippine avian endemism is gravely underestimated

Mistakenly classifying morphologically cryptic endemic species as populations of widespread species potentially interferes with the conservation of biodiversity because undetected endemics that are imperilled may lack appropriate protection. It also impedes the reconstruction of the evolutionary history of a taxon by obscuring the number and distributional limits of species. Here, we present genetic and phylogenetic evidence corroborated by morphology that Philippine populations of seven widespread, non-migratory passerine birds might represent unrecognized, distinct species. An extrapolation based on this finding suggests that the proportion of endemic bird species in the Philippines could be much higher than currently estimated. This high degree of cryptic diversity in a well-studied, volant taxon implies that large numbers of unrecognized species can be expected in less thoroughly studied groups. We predict that genetic investigations of insular populations of widespread species will frequently reveal unrecognized island endemics, and because of the vulnerability of island habitats and their biota, these taxa may be particularly susceptible to extinction.     

The science and application of ecological monitoring

We provide a broad overview of the underlying philosophy of ecological monitoring. We argue that the major characteristics of effective monitoring programs typically include: (1) Good questions. (2) A conceptual model of an ecosystem or population. (3) Strong partnerships between scientists, policy-makers and managers. (4) Frequent use of data collected.We classify monitoring programs into three categories - (1) Passive monitoring, which is devoid of specified questions or underlying study design and has limited rationale other than curiosity. (2) Mandated monitoring where environmental data are gathered as a stipulated requirement of government legislation or a political directive. The focus is usually to identify trends. (3) Question-driven monitoring, which is guided by a conceptual model and by a rigorous design that will typically result in a priori predictions that can be tested.There are advantages and disadvantages of mandated monitoring programs, which are typically large-scaled, and generally smaller-scaled, question-driven monitoring programs. For example, while question-driven monitoring programs can provide insights into the ecological processes giving rise to emergent environmental patterns, spatial generalization from them is difficult because results may not extrapolate well to other regions, states or to a national level. Conversely, while mandated monitoring can be useful for producing coarse level summaries of temporal changes in a target population or resource condition they may not identify the mechanism influencing a change in an ecosystem or an entity. A key remaining challenge is to develop much improved mandated monitoring programs through more widespread adoption of the features of successful question-driven monitoring programs in efforts to enhance biodiversity conservation and environmental management.     

Stress: An inevitable component of animal translocation

As the number and diversity of animal species meriting conservation intervention increases, improving the success of translocation efforts is vital and understanding the role of physiological stress in translocation failure is essential. Though the short-term acutestress response is critical for survival in the wild, chronic stress results in pathology and occurs when the physiological stress response system is pushed beyond the normal capacity and becomes dysregulated. As this review discusses, translocation may inevitably lead to a state of chronic stress; however, this translocation-induced stress does not doom an animal to post-release failure or preclude translocation as a conservation tool. Rather, because chronic stress in translocated animals may actually be the norm rather than the exception, “stress” can be considered a predictable factor to incorporate into translocation planning. In terms of translocation failure, we argue that the role of stress is an indirect one. Translocation-induced chronic stress increases the overall vulnerability of the individuals and, as a result, decreases the probability that the population will become self-sustaining. In this review, we further propose techniques to potentially decrease the total number and magnitude of stressor exposures throughout the translocation procedure in order to diminish the incidence of chronic stress-related pathology. Aspects of the translocation activities, such as capture techniques and care procedures during captivity, can be adjusted to accomplish this. Though stress may be an inevitable component of translocation, reducing the impact and time course of chronic stress on the physiology and behavior of translocated animals will increase the likelihood of translocation success as measured by the formation of a new, self-sustaining population     

Multi-trophic consequences of kelp harvest

Coastal kelp forest ecosystems provide important habitats for a diverse assemblage of invertebrates, fish and marine top-predators such as seabirds and sea mammals. Although kelp is harvested industrially on a worldwide scale little is known about the multi-trophic consequences of this habitat removal. We investigated how kelp fisheries, which remove feeding and nursery grounds of coastal fish, influence local food webs and the availability of food to a marine top predator, the great cormorant (Phalacrocorax carbo). We conducted experimental harvesting of the canopy-forming kelp (Laminaria hyperborea) during a 3 year period (2001-2003) in an area at the coast of Central Norway while synoptically monitoring fish occurrence and cormorant foraging parameters. Our results demonstrate that cormorants preferentially foraged within kelp-forested areas and performed significantly more dives when feeding in harvested versus un-harvested areas suggesting lower foraging yield in the former case. In kelp areas that were newly harvested the number of small (<15 cm) gadid fish was 92% lower than in un-harvested areas. This effect was persistent for at least 1 year following harvest. To our knowledge, this is the first time that the ecological consequences of kelp harvesting have been tested at a multi-trophic level. The results presented strongly suggest that kelp harvesting affects fish abundance and diminishes coastal seabird foraging efficiency. Kelp fisheries are currently managed in order to maximize the net harvest of kelp biomass, and the underlying effects on the ecosystems are partly ignored. This study calls for re-assessment of such management practices.     

The influence of precipitation pulses on soil respiration - Assessing the “Birch effect” by stable carbon isotopes

Sudden pulse-like events of rapidly increasing CO₂-efflux occur in soils under seasonally dry climates in response to rewetting after drought. These occurrences, termed “Birch effect”, can have a marked influence on the ecosystem carbon balance. Current hypotheses indicate that the “Birch” pulse is caused by rapidly increased respiration and mineralization rates in response to changing moisture conditions but the underlying mechanisms are still unclear. Here, we present data from an experimental field study using straight-forward stable isotope methodology to gather new insights into the processes induced by rewetting of dried soils and evaluate current hypotheses for the “Birch“-CO₂-pulse. Two irrigation experiments were conducted on bare soil, root-free soil and intact vegetation during May and August 2005 in a semi-arid Mediterranean holm oak forest in southern Portugal. We continuously monitored CO₂-fluxes along with their isotopic compositions before, during and after the irrigation. δ¹³C signatures of the first CO₂-efflux burst, occurring immediately after rewetting, fit the hypothesis that the “Birch” pulse is caused by the rapid mineralization of either dead microbial biomass or osmoregulatory substances released by soil microorganisms in response to hypo-osmotic stress in order to avoid cell lyses. The response of soil CO₂-efflux to rewetting was smaller under mild (May) than under severe drought (August) and isotopic compositions indicated a larger contribution of anaplerotic carbon uptake with increasing soil desiccation. Both length and severity of drought periods probably play a key role for the microbial response to the rewetting of soils and thus for ecosystem carbon sequestration.     

Estimating the component of soil respiration not dependent on living plant roots: Comparison of the indirect y-intercept regression approach and direct bare plot approach

Distinguishing between root and non-root derived CO₂ efflux is important when determining rates of soil organic matter turnover, however, in practice they remain difficult to separate. Our aim was to evaluate two methods for determining the component of below-ground respiration not dependent on plant roots (i.e., basal soil respiration; R_b). The first approach estimated R_b indirectly from the y-intercept of linear regressions between below-ground respiration (BGR) and root biomass. The second approach involved direct measurements of soil respiration from bare plots. To compare the contrasting approaches, BGR and crop biomass measurements were collected throughout the year in a range of agricultural systems. We found that both methods were very closely correlated with each other. Values of R_b determined by the intercept approach, however, were slightly higher than those determined by measurement of bare plots. Both approaches showed a seasonal trend with estimates of R_b lowest in winter months at 0.02 t C ha⁻¹ month⁻¹ for the y-intercept approach and 0.11 t C ha⁻¹ month⁻¹ for the bare plots approach, even after the data had been corrected for the influence of soil temperature. Highest rates of R_b occurred from the height to the end of the crop growing season (0.8-1.5 t C ha⁻¹ month⁻¹). The annual CO₂ efflux due to R_b was estimated to be 8.1 t C ha⁻¹ y⁻¹ from the y-intercept approach and 6.8 t C ha⁻¹ y⁻¹ from bare plots. Annual BGR was 12.1 t C ha⁻¹ y⁻¹. We conclude that both methods provide similar estimates of R_b, however, logistically the bare plots approach is much easier to undertake than the y-intercept approach.     

The response of organic matter mineralisation to nutrient and substrate additions in sub-arctic soils

Global warming in the Arctic may alter decomposition rates in Arctic soils and therefore nutrient availability. In addition, changes in the length of the growing season may increase plant productivity and the rate of labile C input below ground. We carried out an experiment in which inorganic nutrients (NH₄NO₃ and NaPO₄) and organic substrates (glucose and glycine) were added to soils sampled from across the mountain birch forest-tundra heath ecotone in northern Sweden (organic and mineral soils from the forest, and organic soil only from the heath). Carbon dioxide production was then monitored continuously over the following 19 days. Neither inorganic N nor P additions substantially affected soil respiration rates when added separately. However, combined N and P additions stimulated microbial activity, with the response being greatest in the birch forest mineral soil (57% increase in CO₂ production compared with 26% in the heath soil and 8% in the birch forest organic soil). Therefore, mineralisation rates in these soils may be stimulated if the overall nutrient availability to microbes increases in response to global change, but N deposition alone is unlikely to enhance decomposition. Adding either, or both, glucose and glycine increased microbial respiration. Isotopic separation indicated that the mineralisation of native soil organic matter (SOM) was stimulated by glucose addition in the heath soil and the forest mineral soil, but not in the forest organic soil. These positive ‘priming’ effects were lost following N addition in forest mineral soil, and following both N and P additions in the heath soil. In order to meet enhanced microbial nutrient demand, increased inputs of labile C from plants could stimulate the mineralisation of SOM, with the soil C stocks in the tundra-heath potentially most vulnerable.     

Long-term organic phosphorus mineralization in Spodosols under forests and its relation to carbon and nitrogen mineralization

In forest soils where a large fraction of total phosphorus (P) is in organic forms, soil micro-organisms play a major role in the P cycle and plant availability since they mediate organic P transformations. However, the correct assessment of organic P mineralization is usually a challenging task because mineralized P is rapidly sorbed and most mineralization fluxes are very weak. The objectives of the present work were to quantify in five forest Spodosols at soil depths of 0-15 cm net mineralization of total organic P and the resulting increase in plant available inorganic P and to verify whether net or gross P mineralization could be estimated using the C or N mineralization rates. Net mineralization of total organic P was derived from the net changes in microbial P and gross mineralization of P in dead soil organic matter. We studied very low P-sorbing soils enabling us to use lower extractants to assess the change in total inorganic P as a result of gross mineralization of P in dead soil organic matter. In addition, to enable detection of gross mineralization of P in dead soil organic matter, a long-term incubation (517 days) experiment was carried out. At the beginning of the experiment, total P contents of the soils were very low (19-51 μg g⁻¹) and were essentially present as organic P (17-44 μg g⁻¹, 85-91%) or microbial P (6-14 μg g⁻¹; 24-39%). Conversely, the initial contents of inorganic P were low (2-7 μg g⁻¹; 9-15%). The net changes in the pool size of microbial P during the 517 days of incubation (4-8 μg g⁻¹) and the amounts of P resulting from gross mineralization of dead soil organic matter (0.001-0.018 μg g⁻¹ day⁻¹; 0.4-9.5 μg g⁻¹ for the entire incubation period) were considerable compared to the initial amounts of organic P and also when compared to the initial diffusive iP fraction (<0.3 μg g⁻¹). Diffusive iP corresponds to the phosphate ions that can be transferred from the solid constituents to the soil solution under a gradient of concentration. Net mineralization of organic P induced an important increase in iP in soil solution (0.6-10 μg g⁻¹; 600-5000% increase) and lower increases in diffusive iP fractions (0.3-5 μg g⁻¹; 300-2000% increase), soil solid constituents having an extremely low reactivity relative to iP. Therefore, soil micro-organisms and organic P transformations play a major role in the bioavailability of P in these forest soils. In our study, the dead soil organic matter was defined as a recalcitrant organic fraction. Probably because gross mineralization of P from this recalcitrant organic fraction was mainly driven by the micro-organisms’ needs for energy, the rates of gross mineralization of C, N and P in the recalcitrant organic fraction were similar. Indirect estimation of gross mineralization of P in dead soil organic matter using the gross C mineralization rate seems thus an alternative method for the studied soils. However, additional studies are needed to verify this alternative method in other soils. No relationships were found between microbial P release and microbial C and N releases.     

Emissions of CO2, CH4 and N2O from Southern European peatlands

Peatlands play an important role in emissions of the greenhouse gases CO₂, CH₄ and N₂O, which are produced during mineralization of the peat organic matter. To examine the influence of soil type (fen, bog soil) and environmental factors (temperature, groundwater level), emission of CO₂, CH₄ and N₂O and soil temperature and groundwater level were measured weekly or biweekly in loco over a one-year period at four sites located in Ljubljana Marsh, Slovenia using the static chamber technique. The study involved two fen and two bog soils differing in organic carbon and nitrogen content, pH, bulk density, water holding capacity and groundwater level. The lowest CO₂ fluxes occurred during the winter, fluxes of N₂O were highest during summer and early spring (February, March) and fluxes of CH₄ were highest during autumn. The temporal variation in CO₂ fluxes could be explained by seasonal temperature variations, whereas CH₄ and N₂O fluxes could be correlated to groundwater level and soil carbon content. The experimental sites were net sources of measured greenhouse gases except for the drained bog site, which was a net sink of CH₄. The mean fluxes of CO₂ ranged between 139 mg m⁻² h⁻¹ in the undrained bog and 206 mg m⁻² h⁻¹ in the drained fen; mean fluxes of CH₄ were between −0.04 mg m⁻² h⁻¹ in the drained bog and 0.05 mg m⁻² h⁻¹ in the drained fen; and mean fluxes of N₂O were between 0.43 mg m⁻² h⁻¹ in the drained fen and 1.03 mg m⁻² h⁻¹ in the drained bog. These results indicate that the examined peatlands emit similar amounts of CO₂ and CH₄ to peatlands in Central and Northern Europe and significantly higher amounts of N₂O.