Structural basis of DNA replication origin recognition by an ORC protein

DNA replication in archaea and in eukaryotes share many similarities. We report the structure of an archaeal origin recognition complex protein, ORC1, bound to an origin recognition box, a DNA sequence that is found in multiple copies at replication origins. DNA binding is mediated principally by a C-terminal winged helix domain that inserts deeply into the major and minor grooves, widening them both. However, additional DNA contacts are made with the N-terminal AAA+ domain, which inserts into the minor groove at a characteristic G-rich sequence, inducing a 35 degrees bend in the duplex and providing directionality to the binding site. Both contact regions also induce substantial unwinding of the DNA. The structure provides insight into the initial step in assembly of a replication origin and recruitment of minichromosome maintenance (MCM) helicase to that origin.     

The effect of theH1 gene in potatoes,conferring resistance toGlobodera rostochiensis,on resistance toG. pallida derived fromSolanum vernei andS. tuberosum ssp.andigena CPC 2802

Summary The major geneH1 confers resistance in potatoes to the golden potato cyst nematode (Globodera rostochiensis). No direct effect of the gene on resistance to the white potato cyst nematode (G. pallida) was found, but factors increasing resistance toG. pallida were detected and it is possible that these are linked to theH1 gene. The implications of such linkage are discussed.     

Indigenous burning shapes the structure of visible and invisible fire mosaics

Landscape Ecology - In many regions of the world, Indigenous people continue to shape landscape patterns using fire. Some studies show that Indigenous fire regimes create a diverse “visible...     

High resolution temporal variation in wood properties in irrigated and nonirrigated Eucalyptus globulus

? Environmental determinants of wood properties variation were examined in Eucalyptus globulus, a globally important hardwood plantation species, in southern Tasmania, Australia.

? Radial variation in wood properties, measured with the SilviScan system, were re-scaled from distance to time abscissa using stem radial growth data measured with dendrometers. With this re-scaled data it was possible to evaluate how water availability and temperature affected wood density, microfibril angle (MFA) and fibre and vessel transverse dimensions in irrigated and non-irrigated trees.

? Wood density, fibre radial diameter and MFA were sensitive to water availability. Wood density increased and fibre radial diameter decreased in response to reduced water availability. When high water availability was maintained, wood density was negatively correlated with temperature. Together, temperature and soil matric potential explained about 60% of temporal variation in wood density variation. In contrast MFA was not related to temperature but decreased with increasing water stress. Slower growing trees also had lower MFA than faster growing trees. Slower growing trees had a larger number of vessels per unit area of wood than faster growing trees within this even aged stand. However, vessel radius to the 4th power was significantly higher in faster growing trees than in slower growing trees.

? Overall, E. globulus wood properties were sensitive to temporal changes in environmental conditions (particularly water availability) and associated growth rates. The data provided support for the hypothesis that growth rates are hydraulically mediated.

     

The characterization and classification of the Black River Upper Morass,Jamaica, using the three‐parameter test of vegetation,soils and hydrology

• 1. The characterization and classification of the Black River Upper Morass was conducted using the criteria of the three‐parameter test for vegetation, soils and hydrology at 14 sites within the study area.
• 2. The Upper Morass exhibited 71% hydrophytic vegetation typical of wetlands (vascular and non‐vascular plants including Cladium jamaicense, Phragmites australis, Typha angustifolia and Sagittaria lancifolia) and 29% vegetation atypical of wetlands.
• 3. The Upper Morass is classified as a Palustrine System with sub‐classes of Aquatic Bed and Persistent Emergent Wetland.
• 4. The presence throughout the Upper Morass of monoculture stands of the invasive species Eichhornia crassipes and Typha domingensis, which are known to invade disturbed or partially drained wetlands, confirmed that the study area was a disturbed ecosystem.
• 5. The Upper Morass exhibited hydric (flood‐water and groundwater) soils, which, in association with its temporarily flooded and saturated wetland hydrology, indicated that it is groundwater‐driven.
• 6. Application of the three‐parameter test indicated a linkage between the functions of the Upper Morass and the Lower Morass, and thus a need for conservation of the Black River Morass System as a single unit rather than two independent wetlands. Two key instruments of conservation will be further detailed ecological assessments and the implementation of a management plan.

Copyright © 2006 John Wiley & Sons, Ltd.     

The effects of stocking density on gonad growth, survival and feed intake of adult green sea urchin (Strongylocentrotus droebachiensis)

In this study the effects of different stocking densities on survival, gonad growth and feed intake in adult green sea urchin (Strongylocentrotus droebachiensis) were examined. Two size groups of sea urchins with respective initial mean weight of 45 g (S) and 70 g (L) were used. The experiments were carried out in 755 l plastic tanks divided into chambers by vertical fibreglass lamellae. In the two experiments stocking densities of 6, 12, 14 and 16 kg m^− 2 (Exp I) and 3, 6 and 8 kg m^− 2 (Exp II) were used. Sea urchins reared individually in compartmentalised raceways were used as controls in both experiments. All groups were fed a formulated moist feed ad libitum for 60 days at 8 °C (± 0.5). Mortality was observed in all groups, except for the control group and the lowest density group of large sea urchins (3 kg m^− 2, L). Both mortality and occurrence of injuries increased significantly with increasing stocking density in both experiments and for both size groups. In the highest density groups mortality was 60% (L) and 80% (S). There was a significant increase in gonad index during the experimental period in both experiments. Increased stocking density had a significantly negative effect on gonad growth in both size groups while feed intake was unaffected. The results show that adult S. droebachiensis can maintain high survival rate and high gonad growth at stocking densities up 6 kg m^− 2 in holding facilities of the design used in the present study.     

The frequency dependence of osmo-adaptation in Saccharomyces cerevisiae

The propagation of information through signaling cascades spans a wide range of time scales, including the rapid ligand-receptor interaction and the much slower response of downstream gene expression. To determine which dynamic range dominates a response, we used periodic stimuli to measure the frequency dependence of signal transduction in the osmo-adaptation pathway of Saccharomyces cerevisiae. We applied system identification methods to infer a concise predictive model. We found that the dynamics of the osmo-adaptation response are dominated by a fast-acting negative feedback through the kinase Hog1 that does not require protein synthesis. After large osmotic shocks, an additional, much slower, negative feedback through gene expression allows cells to respond faster to future stimuli.     

Veterinary school consortia as a means of promoting the food-supply veterinary medicine pipeline

Ideas about centers of emphasis and veterinary medical teaching consortia have resurfaced to attract students into food-supply veterinary medicine (FSVM). From 1988 to 2000 a multiple veterinary school consortium approach to food-animal production medicine (FAPM) teaching was conducted to handle regional differences in case load, faculty strengths, and student interests. Six universities developed a memorandum of understanding to provide a wide variety of in-depth, species-specific clinical experiences in FAPM to balance their individual strengths and weakness in addressing food-animal agriculture, to provide for student exchange and faculty development, and to conduct research in food safety. Changes in leadership, redirection of funds, failure to publicize the program to faculty and students, and a focus on research as opposed to teaching led to dissolution of the consortium. However, this approach could work to improve recruitment and retention of students in FSVM if it focused on student exchange, fostered a more integrated curriculum across schools, encouraged faculty involvement, garnered institutional support, and used modern technology in teaching. Private veterinary practices as well as public/corporate practices could be integrated into a broader food-animal curriculum directed at building competency among FSVM students by providing the in-depth training they require. Requirements for the success of this type of program will include funding, marketing, leadership, communication, coordination, integration, and dedicated people with the time to make it work.     

Toxicity in Resting Cysts of the Red-Tide Dinoflagellate Gonyaulax excavata from Deeper Water Coastal Sediments

For the first time, Gonyaulax excavata cysts have been shown to be toxic. Bottom sediments from a water depth of 90 meters off the Maine coast were extremely rich in cysts, which were approximately ten times more toxic than the corresponding motile stages. Cysts are probably ingested by shellfish, thereby causing shellfish toxicity in deeper waters offshore and contributing to shellfish toxicity in shallower coastal waters. A new approach to the problem of paralytic shellfish poisoning is therefore needed, one that takes into account benthic cysts and sedimentary factors affecting their distribution. The possible dangers of spreading poisoning through human activities must be considered.