Virulence markers in Shiga toxin-producing Escherichia coli isolated from cattle.

This study identified potential virulence markers in 93 eae-positive and 179 eae-negative Shiga toxin-producing Escherichia coli (STEC), isolated from a random sampling of healthy cattle in southwestern Ontario. PCR amplification was used to identify genes for enterohemorrhagic E. coli (EHEC)-hemolysin, the EAF plasmid, and bundle-forming pili (Bfp); adherence to HEp-2 cells and to bovine colonocytes, and the fluorescent actin staining (FAS) test were used to characterize interaction of the bacteria with epithelial cells. The EHEC-hemolysin sequences were detected in 98% of eae-positive isolates compared with 34% of eae-negative isolates. All isolates were negative for EAF and bfp sequences. There was 100% correlation between localized adherence (LA) to HEp-2 cells and the FAS test. Forty-eight (52%) of the eae-positive isolates were LA/FAS-positive, whereas none of the 179 eae-negative isolates was positive in either test. Among the eae-negative isolates, 20 (11%) showed diffuse adherence and 5 (2.8%) showed enteroaggregative adherence to HEp-2 cells. Seventy-three percent of the eae-positive isolates adhered to bovine colonocytes, whereas only 26% of 120 eae-negative isolates that were tested adhered. All 13 O157:H7 isolates were positive for eae and EHEC-hemolysin gene sequences, LA/FAS, and adherence to bovine colonocytes. It is concluded that possession of genes for eae and EHEC hemolysin is correlated with the serotype of STEC, that production of EHEC hemolysin was highly correlated with serotypes implicated in human disease, and that none of the potential markers that were examined can be used to predict the potential virulence of an isolate.     

Influence of mapping resolution on assessments of stream and streamside conditions: lessons from coastal Oregon,USA

• 1. Digital hydrographic data are commonly employed in research, planning, and monitoring for freshwater conservation, but hydrographic datasets differ in spatial resolution and accuracy of spatial representation, possibly leading to inaccurate conclusions or unsuitable policies for streams and streamside areas.
• 2. To examine and illustrate the potential for different hydrographic datasets to influence in‐channel and streamside characterizations, a study area in the US Pacific Northwest was chosen because 1:100 000, 1:24 000, and densified 1:24 000 hydrography are available and widely used in research and management for several species of Pacific salmon and trout at risk. The potential was examined for differences among the digital hydrographic datasets in: (1) spatial extent to influence estimated abundances of fish habitat, streamside buffer conditions, and fish distributions; and (2) spatial position to influence estimated streamside buffer conditions and estimated stream gradient.
• 3. The analysis of spatial extent found the total stream length represented by the 1:100 000 hydrography was approximately one half that of 1:24 000 hydrography and only one fifth that of densified 1:24 000 hydrography. The 1:100 000 and 1:24 000 networks differed significantly for 13 out of 18 fish habitat attributes, and the three hydrographic datasets differed significantly for many characteristics in streamside buffers; fish distributions mapped at 1:24 000 added 6–14% of stream length to 1:100 000 distributions. The analysis of spatial position found few differences between the 1:100 000 and 1:24 000 hydrography in streamside buffer characteristics but significant differences in channel gradient.
• 4. Overall, hydrographic datasets differed only slightly in spatial position but differed in spatial extent to the point of representing different populations of streams. If species inhabiting larger streams (greater mean annual discharge) are of interest, then results derived from studies based on 1:100 000 hydrography should prove useful. However, higher‐resolution hydrography can be critical when designing and implementing strategies to protect fish and other aquatic species at risk in smaller streams.

Copyright © 2008 John Wiley & Sons, Ltd.     

The importance of environment and life stage on interpretation of silky shark relative abundance indices for the equatorial Pacific Ocean

Recent large fluctuations in an index of relative abundance for the silky shark in the eastern Pacific Ocean have called into question its reliability as a population indicator for management. To investigate whether these fluctuations were driven by environmental forcing rather than true changes in abundance, a Pacific‐wide approach was taken. Data collected by observers aboard purse‐seine vessels fishing in the equatorial Pacific were used to compute standardized trends in relative abundance by region, and where possible, by shark size category as a proxy for life stage. These indices were compared to the Pacific Decadal Oscillation (PDO), an index of Pacific Ocean climate variability. Correlation between silky indices and the PDO was found to differ by region and size category. The highest correlations by shark size category were for small (<90 cm total length [TL]) and medium (90–150 cm TL) sharks from the western region of the equatorial eastern Pacific (EP) and from the equatorial western Pacific. This correlation disappeared in the inshore EP. Throughout, correlations with the PDO were generally lower for large silky sharks (>150 cm TL). These results are suggestive of changes in the small and medium silky indices being driven by movement of juvenile silky sharks across the Pacific as the eastern edge of the Indo‐Pacific Warm Pool shifts location with ENSO events. Lower correlation of the PDO with large shark indices may indicate that those indices were less influenced by environmental forcing and therefore potentially less biased with respect to monitoring population trends.     

Effect of Environment and Genotype on Durum Wheat Gluten Strength and Pasta Viscoelasticity

Data on the quality of durum wheat genotypes grown under eight environments (site-year combinations) were evaluated to determine the relative effects of genotype and environment on quality characteristics associated with gluten strength, protein content, and pasta texture. The 10 durum wheat genotypes assessed in this study represented a range of gluten strength types from the very strong U.S. desert durum genotype, Durex, to the medium strength Canadian genotype, Plenty. Considerable genetic variability was detected for all quality characteristics studied. Genotype-environment interaction was significant for all quality parameters evaluated, with the exception of mixograph development time. Genotypeenvironment interaction was most important in determining protein content and least important in determining gluten index, gluten viscoelasticity, and SDS sedimentation volume. The nature of the genotype-environment interaction was evaluated by determining the number of significant crossover (rank change) interactions. There was at least one significant crossover interaction between pairs of genotypes and environments for five of eight quality traits tested. Of 45 genotype pairs, eight and six showed significant crossover interactions for protein content and pasta disk viscoelasticity, respectively. Significant crossover interactions were at least partially due to the differential response of Canadian genotypes as compared with U.S. genotypes. With the exception of protein content and pasta disk viscoelasticity, our results suggest that among the selected sample of 10 genotypes, genotype-environment interactions were minor and due primarily to changes in magnitude rather than changes in rank.     

Estimating fishery effects in a marine protected area: Lamlash Bay

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A new approach and case study for estimating extent and rates of habitat loss for ecological communities

The pace and magnitude of biodiversity loss has led to wide recognition that efforts to conserve individual species must be complemented by assessment and planning at community and ecosystem levels. Emerging protocols for assessing the conservation status of communities include as central criteria the current extent, historical reduction and contemporary rate of decline in geographic distribution. Estimation of these parameters is confronted by methodological challenges, data limitations and uncertainties that may vary from case to case. We describe an approach to these issues comprising five steps: (1) classification of the community using an analysis of data from systematic ground surveys; (2) mapping to produce a contemporary baseline distribution (1980s); (3) interpolation to produce a historical distribution (pre-European settlement); (4) interpretation of satellite imagery to update the distribution (various dates up to 2004) and (5) assessment of change in extent over historical and contemporary time scales incorporating plausible bounds of uncertainty around best estimates. The bounds can be based on areas for which image interpretation produces uncertain diagnosis of clearing and differences between credible alternative base maps of the same area. We demonstrated the approach using a case study of Coolibah-Black Box Woodland, a declining semi-arid woodland community in Australia and found that 61% (plausible range 50-67%) of the woodland community had been cleared since European settlement and that during 1998-2004 the community continued to decline on average by 135.3(±21.7) km² each year, or 1.7(±0.3)% of each previous year’s distribution, apparently accelerating in recent years. Strengths of the approach include the use of biological data (cf. remote sensing) to distinguish the target assemblage from others, the use of historical and contemporary base lines to examine change over different time scales, and the use of bounded estimates to incorporate uncertainty into the assessment.     

Intake, live animal scores/measurements and carcass composition and value of late-maturing beef and dairy breeds

The objectives of this study were to compare the progeny of 1) late-maturing beef with dairy breeds and 2) Charolais (CH), Limousin (LM), Simmental (SM) and Belgian Blue (BB) sires bred to beef suckler dams, for feed intake, blood hormones and metabolites, live animal measurements, carcass traits and carcass value in bull and steer production systems. The bull system included 50 late-maturing beef breeds and 22 Holsteins (HO) slaughtered at approximately 15 months of age, whereas the steer system consisted of 56 late-maturing beef breeds and 23 British Friesians (FR) slaughtered at approximately 24 months of age. Beef breeds were suckled until approximately 8 months of age, while dairy breeds were artificially reared until weaning at approximately 3 months of age. All animals were finished on an ad libitum concentrate diet. Mean live weight, live weight gain, carcass gain and feed efficiency were greater (P < 0.05) in beef than dairy breeds in both systems during the finishing period when offered concentrates. Although there was no difference in feed intake between beef and dairy breeds, intake expressed relative to live weight was lower (P < 0.001) in beef breeds in both systems. At 10 months of age and pre-slaughter, beef breeds had higher (P < 0.001) muscularity scores and greater scanned muscle depth (P < 0.001) than their dairy contemporaries. Carcass weight, kill-out proportion, carcass conformation score, meat proportion and value were greater (P < 0.001) and carcass fat and bone proportions were lower (P < 0.05) in beef than dairy breeds in both systems. Insulin concentrations were lower (P < 0.001) in beef than dairy breeds, whereas there was no difference in blood metabolites or IGF-1 concentrations. Feed intake expressed relative to live weight or feed efficiency did not differ between CH, LM, SM or BB sired progeny. Muscularity scores were greater (P < 0.05) in BB than SM, whereas skeletal scores were lower (P < 0.05) in LM than SM. Limousin had lower (P < 0.05) carcass gain per day of age than CH and SM, whereas SM had a lower (P < 0.05) carcass conformation score than BB and CH and a higher (P < 0.05) carcass fat score than CH. Simmental had a lower (P < 0.05) carcass meat proportion and a higher (P < 0.05) carcass fat proportion than CH, LM and BB, which were similar (P > 0.05). The improvement obtained for beef over dairy breeds in live weight gain was 12%, while the improvements in carcass gain and meat produced was 24% and 33%, respectively. This demonstrates that the importance of carcass data contributing to breed comparison studies cannot be over-emphasised.     

RL4137 contributes preharvest sprouting resistance to Canadian wheats

Preharvest sprouting (PHS) in spring wheat (Triticum aestivum L.) causes significant economic losses due to a reduction in grain functionality, grain yield and viability of seed for planting. Genetic resistance to PHS reduces these losses. Development of PHS resistant cultivars is complicated by the effects of genotype, environment, kernel diseases and spike morphological factors. RL4137 has consistently exhibited high levels of resistance to PHS over years and environments. The mean PHS scores of Canada Western Red Spring (CWRS) wheat cultivars with RL4137 in their ancestry are lower than that of CWRS wheat cultivars without. RL4137 has two mechanisms for PHS resistance, one associated with kernel color and the other not associated with kernel color. RL4137 was the source of PHS resistance in white wheats HY361, AC Vista, Snowbird, Kanata, and Snowstar, all of which had significantly lower PHS scores than the white-seeded check, Genesis. Known DNA markers relating to PHS were used to compare haplotypes with and without RL4137 in the ancestry. Coefficients of parentage also demonstrated the relationship. Because cultivars that have RL4137 in their ancestry were grown on about 77% of the spring wheat area for 2003–2007, RL4137 continues to contribute to protecting market grade from preharvest sprouting.