Effects of the nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP) on abundance and activity of ammonia oxidizers in soil

Biology and Fertility of Soils - Recent evidence from several environments suggest that besides autotrophic ammonia-oxidizing bacteria (AOB), ammonia-oxidizing archaea (AOA) are also able to...     

Correlation of phytotoxin production with pathogenicity ofStreptomyces scabies isolates from scab infected potato tubers

A total of 23 isolates obtained from scab infected potato tubers representative of six sampling areas in Eastern and Central Canada and five ATCCStreptomyces strains were screened for pathogenicity on the basis of their ability to initiate scab development on aseptically cultured minitubers and plant generated tubers. The results were then correlated with any associated generation of the scab inducing phytotoxin, Thaxtomin A. In all cases a positive correlation was demonstrated between the pathogenicity of variousStreptomyces scabies isolates and their ability to produce the phytotoxin.     

Biochars and their feedstocks differ in their short-term effects in ameliorating acid soils grown with aluminium-sensitive wheat

Journal of Soils and Sediments - Biochars have potential to reduce soil acidity and Al3+ toxicity, and increase the availability of soil nutrients. This study aimed to compare the effectiveness of...     

Assessment of Microbial Communities In Decomposition of Specified Risk Material Using a Passively Aerated Laboratory-Scale Composter

The occurrence of bovine spongiform encephalopathy (BSE) in Canada has resulted in the implementation of regulations to remove specified risk material (SRM) from the food chain. SRM includes the distal ileum of all cattle, and the skull, brain, trigeminal ganglia, eyes, palatine tonsils, and spinal cord and dorsal root ganglia of cattle ≥30 months of age. Composting may be a viable alternative to rendering for SRM disposal. In our study, two bulking agents, barley straw and wood shavings, were composted with beef manure along with SRM in passively aerated, laboratory-scale composters. Both composts heated rapidly, exceeding 55°C after 3 days with oxygen declining in the early composting stage with wood-shaving compost, but returning to near-original levels after 5 days. During composting the two matrices differed (P <0.05) only in water content, TC and bulk density. In the final compost, water content, TC and C/N ratio were higher (P < 0.05), while EC was lower (P < 0.05) in the wood shavings as compared to the straw compost. Approximately 50% of SRM was decomposed after 15 days of composting, with 30% of SRM being decomposed within the first 5 days. Phospholipid fatty acid (PLFA) profiles were used to characterize the microbial communities and showed that Gram positive bacteria were predominant in compost at day 5, a point that coincided with a rapid increase in temperature. Gram negative bacteria and anaerobes declined at day 5 but populations recovered by day 15. Fungi appeared to be suppressed as temperatures exceeded 55°C and did not appear to recover over the remainder of the composting period, with the exception of the straw compost at day 15. On day 5, Actinomycetes increased in the straw compost, but declined in the wood shavings compost, with this group increasing in both types of compost at day 15. Although temporal changes were evident, compost matrices or depth within the composter did not obviously influence microbial communities. Decomposition of SRM also did not differ between compost matrices or with depth in the composters. These results suggest that SRM decompose rapidly during composting and that both mesophilic and thermophilic microbial communities play a role in its decomposition.     

Effects of acorn size and mass on seedling quality of northern red oak (<Emphasis Type="Italic">Quercus rubra</Emphasis>)

Oaks are not sustainable in many upland temperate forests because of poor recruitment resulting from natural regeneration. Artificial regeneration is an alternative to natural regeneration, but is difficult, in part, due to large variation in seedling quality. In this study, we examined the effects of acorn size and mass on nursery seedling morphological parameters commonly used to quantify seedling quality, and we determined if genetic factors affected these relationships. Acorns were collected from six open-pollinated orchard trees (i.e., six half-sib families), and were separated into six size classes based on acorn diameter (ranging from 1.3 to 2.5 cm). Samples from each size class were weighed for total fresh mass. Acorns were sown in a commercial bareroot nursery in Polk County, Tennessee, USA, and seedlings were grown for 1 year using nursery protocols to maximize growth. Seedling survival was generally not affected by acorn size class or mass, except one family had higher survival in the larger acorn size classes. Five of the six families had no discernable relationship between acorn size class and seedling size. Acorn mass was positively related to seedling morphology, but relationships were weak (R²?≤?0.11) and biologically insignificant. Neither acorn size nor mass could be used reliably to predict seedling survival or morphological indicators of seedling quality. We hypothesized that results were affected by an unusually long growing season and advanced fertilization regimes at the nursery, which may have negated acorn size/mass effects on seedling growth. Family affected relationships between acorn size/mass and seedling morphology, indicating that family selections could improve overall seedling quality.     

Relationship of growth performance to pneumonia and atrophic rhinitis detected in pigs at slaughter

Three commercial swine herds were selected for study, because pigs at slaughter consistently had lung lesions typical of bronchopneumonia and snout lesions consistent with atrophic rhinitis. Pigs were reared in the conventional system for each herd except that they were identified at birth and weighted at various intervals. At slaughter, individual pig lungs and snout were examined for lesions of pneumonia and atrophic rhinitis, respectively. Lesions were scored and correlated with growth indicators for each pig. Included in the growth indicators were: average daily gain (growing phase), average daily gain (finishing phase), average daily gain (total), and days to reach 104.5-kg body weight. Additionally, for each pig, scores for lung lesions were correlated to grades for snout lesions. Three correlation coefficients for measurements of pigs within herd B were significant and included days to 104.5-kg body weight and grades for snout lesions, -0.15 (P less than 0.02); average daily gain (finishing) and grades for snout lesions, 0.17 (P less than 0.01); and average daily gain (total) and grades for snout lesions, 0.16 (P less than 0.01). Contrary to findings in other investigations, pigs that attained market weight at the youngest age did not have the lowest score for lung lesions, the lowest grade for snout lesions, or the least extensive or severe lesions. Combining data from all 3 herds, the mean scores for lung lesions and mean grades for snout lesions decreased significantly (P less than 0.05) as the age of pigs at slaughter increased. All other statistical correlations were not significant.(ABSTRACT TRUNCATED AT 250 WORDS)     

The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility

Segmental duplications in the human genome are selectively enriched for genes involved in immunity, although the phenotypic consequences for host defense are unknown. We show that there are significant interindividual and interpopulation differences in the copy number of a segmental duplication encompassing the gene encoding CCL3L1 (MIP-1alphaP), a potent human immunodeficiency virus-1 (HIV-1)-suppressive chemokine and ligand for the HIV coreceptor CCR5. Possession of a CCL3L1 copy number lower than the population average is associated with markedly enhanced HIV/acquired immunodeficiency syndrome (AIDS) susceptibility. This susceptibility is even greater in individuals who also possess disease-accelerating CCR5 genotypes. This relationship between CCL3L1 dose and altered HIV/AIDS susceptibility points to a central role for CCL3L1 in HIV/AIDS pathogenesis and indicates that differences in the dose of immune response genes may constitute a genetic basis for variable responses to infectious diseases.     

Decline of an isolated timber rattlesnake (Crotalus horridus) population: Interactions between climate change, disease, and loss of genetic diversity

Extinction of populations from anthropogenic forces rarely has a single cause. Instead, population declines result from a variety of factors, including habitat loss, inbreeding depression, disease, and climate change. These impacts often have synergistic effects that can lead to rapid decline in isolated populations, but case studies documenting such processes are rare. Here, we describe the recent decline of the last known population of timber rattlesnakes (Crotalus horridus) in the state of New Hampshire. We used polymorphic nuclear DNA markers to compare genetic diversity of this population to other populations in the region that are not isolated. We also compare results from ongoing field monitoring of these populations. Genetic analyses reveal that the New Hampshire population lacks genetic diversity and exhibits signs of a recent bottleneck. New Hampshire snakes also exhibited high levels of morphological abnormalities (unique piebald coloration, amelanistic tongues) indicative of inbreeding depression. Furthermore, after a year with exceptionally high summer rainfall, a skin infection of unknown etiology caused significant mortality in the New Hampshire population, whereas other surveyed non-inbred populations were unaffected. This case study demonstrates how different anthropogenic impacts on natural environments can interact in unexpected ways to drive threatened populations toward extinction.     

An improved in vitro rearing system for the human head louse allows the determination of resistance to formulated pediculicides

An improved in vitro rearing system, based on a silicone-reinforced Parafilm^® M membrane, human hair tufts and reconstituted human blood, enabled the large-scale rearing of pediculicide-susceptible (EC-HL) and resistant (SF-HL and BR-HL) strains of human head lice. Developmental time differed for early instars but differences became synchronized as lice matured. Mean survivorship amongst the three strains reared in vitro were not significantly different when compared to EC-HL and SF-HL reared in vivo. The efficacies of three pediculicidal products were assessed under semi-clinical conditions using a modified version of the in vitro rearing system. Treatments of 1% permethrin in acetone, Nix^®, Rid^® or Pronto^® Plus to hair tufts following manufacturer’s instructions were highly efficacious (100% mortality) on EC-HL but differentially efficacious (62.2-84.4% mortality) on SF-HL examined eight days post-treatment. SF-HL that survived the first treatment received an identical second treatment eight days following the first treatment. Survivors (13.3-30.0%) developed to adults (10th-11th day following first treatment) and females successfully laid fertile eggs that developed to first instars. These results confirm resistance to permethrin- and pyrethrin-based pediculicide formulations in SF-HL when assessed under semi-clinical conditions and validates resistance previously determined using filter-paper contact bioassays and unformulated insecticides.