Molecular Typing and Presence of Genetic Markers Among Strains of Banana Finger-Tip Rot Pathogen, Burkholderia cenocepacia, in Taiwan

ABSTRACT Burkholderia cenocepacia (genomovar III of B. cepacia complex), the causal agent of banana finger-tip rot, is a common plant-associated bacterium but also an important opportunistic pathogen of humans. To better understand the nature of B. cenocepacia from banana, the genetic variation among B. cenocepacia isolates from various banana-growing regions in southern Taiwan was examined. Forty-four serial isolates recovered from diseased banana stigmata from three banana-growing regions during the periods ranging from 2002 to 2004 were investigated. All B. cenocepacia isolates picked from quinate-yeast extract tetracycline-polymyxin semiselective medium could cause onion maceration and were polymerase chain reaction (PCR) positive for bcscV, which is a type III secretion gene present in all members of the B. cepacia complex except B. cepacia (formerly genomovar I). Genetic diversity was assessed using recA PCR restriction fragment length polymorphism, recA nucleotide sequence analysis, and pulsed-field gel electrophoresis assays. The assays revealed the genetic variability among the isolates and also allowed us to trace the relationship among isolates. The isolates all were assigned to genomovar III and consisted of two groups, A and B, which corresponded to recA lineage IIIA and IIIB. The group B strains were separated into B1 and B2 subgroups and the B1 strains were further divided into distinct lineages. The B1 strains were the most frequently detected and occurred in all regions tested. There was no significant difference between strains from each subgroup in the virulence on banana fingers of cv. Cavendish. PCR assays were further used to determine whether B. cenocepacia from banana contained the cable pilus subunit gene (cblA), IS1356, and B. cepacia epidemic strain marker (BCESM), which are DNA markers associated with epidemic B. cepacia clinic strains. The results indicated that cblA and IS1356 were absent but the BCESM was found in all isolates. The present study revealed that banana is a natural reservoir of genetically diversified B. cenocepacia strains.     

A new Brucella canis species-specific PCR assay for the diagnosis of canine brucellosis

Brucellosis is a zoonotic disease that is transmitted from animals to humans, and the development of a rapid, accurate, and widely available identification method is essential for diagnosing this disease. In this study, we developed a new Brucella canis species-specific (BcSS) PCR assay and evaluated its specificity and sensitivity. A specific PCR primer set was designed based on the BCAN_B0548-0549 region in chromosome II of B. canis. The PCR detection for B. canis included amplification of a 300-bp product that is, not found on other Brucella species or, genetically or serologically related bacteria. The detection limit of BcSS-PCR assay was 6 pg/μl by DNA dilution, or 3 × 10³ colony-forming units (CFU) in the buffy coats separated from whole blood experimentally inoculated with B. canis. Using the buffy coat in this PCR assay resulted in approximately 100-times higher sensitivity for B. canis as compared to detect directly from whole blood. This is the first report of a species-specific PCR assay to detect B. canis, and the new assay will provide a valuable tool for the diagnosis of B. canis infection.     

The siderophore-interacting protein is involved in iron acquisition and virulence of Riemerella anatipestifer strain CH3

Riemerella anatipestifer causes epizootic infectious disease in poultry and serious economic losses especially to the duck industry. However, little is known regarding the molecular basis of its pathogenesis. The ability to acquire iron under low-iron conditions is related to the virulence of a variety of bacterial pathogens. In this study, a sip (Riean_1281) deletion mutant CH3Δsip was constructed and characterized for iron-limited growth, biofilm formation, and pathogenicity to ducklings. Results showed that siderophore-interacting protein (SIP) was involved in iron utilization and the sip deletion significantly reduced biofilm formation and adherence to and invasion of Vero cells. In addition, the sip gene was absent in 1 of 24 (4.17%) virulent strains and 2 of 3 (66.7%) avirulent strains of R. anatipestifer, and the sip gene from six R. anatipestifer strains, which belong to serotypes 1, 2, and 10, respectively, shared 100% amino acid identities to those of R. anatipestifer strains DSM15868 and RA-GD. These results suggested that siderophore-mediated iron acquisition may be an important iron-uptake pathway in R. anatipestifer. Animal experiments indicated that the median lethal dose of the CH3Δsip mutant in ducklings was about 35-fold higher than that of the wild-type CH3 strain. Thus, our results demonstrated that R. anatipestifer SIP was involved in iron acquisition and necessary for its optimal virulence.     

淀山湖鱼类群落结构多样性的年际变化

淀山湖是上海市内陆水域最大的淡水湖泊,主要的淡水渔业水域和水产品来源地,也是重要的水生生物保护基地。为了评估增殖放流和生态环境变化对淀山湖鱼类群落结构变化的影响,本研究以2010-2012年淀山湖的渔业调查资料为基础,对该湖泊的鱼类优势种组成和多样性指数进行年际变化分析,并应用丰度生物量曲线方法对该湖的鱼类群落状况进行分析。结果表明:2010-2012年淀山湖鱼种类数基本稳定,基本鱼种组成变化不显著,优势鱼种组成趋势渐以小型鱼类为主;群落结构多样性指数年间差异不显著(P0.05);ABC曲线显示2010-2012这三年淀山湖群落的数量优势度曲线均高于生物量的优势度曲线,鱼类群落结构仍处于严重干扰状态。因此,建议改善增殖放流鱼种和加强渔业管理,以维持淀山湖鱼类群落的稳定。     

Adherence, haemagglutination and cell surface characteristics of motile aeromonads virulent for fish

Abstract. Motile Aeromonas spp. virulent for fish were studied with regard to their adhesion profile. Electron microscopy demonstrated the presence of fimbriae (pili) on Aeromonas cells regardless of virulence potential. The results show no significant correlations between ability to haemagglutinate, yeast cell co-agglutination and virulence. All strains expressed mannose-sensitive haemagglutinin activity against guinea pig erythrocytes. Using four types of red blood cells no characteristic haemagglutinin pattern related to virulence could be discerned. Expression of surface haemagglutin(s) on Aeromonas hydrophila appears to be medium dependent; strains grown in liquid media demonstrated enhanced haemagglutination activity. Both virulent and avirulent strains had in vitro epithelial cell adhesive capabilities. Cell surface characteristics measured by agglutination in acriflavine and stability after boiling indicated that most virulent strains agglutinated in the presence of acriflavine, but not all sedimented after boiling. The ability of 10 selected strains of A hydrophila to grow in normal pooled catfish serum was determined. Only 17% of the virulence variations can be explained by their sensitivity to serum.     

Computer simulations of homeward-migrating Fraser River sockeye salmon: is compass orientation a sufficient direction-finding mechanism in the north-east Pacific Ocean?

Computer simulations were used to investigate whether compass orientation is a sufficient guidance mechanism for sockeye salmon migrating to the Fraser River from their ocean foraging grounds in the north-east Pacific Ocean. Daily surface ocean currents, simulated by the ocean surface current simulations (OSCURS) model, were used to test the influence of currents on the return oceanic migration of Fraser River sockeye salmon. High seas tagging and coastal recover data of Fraser River sockeye salmon were used for the migration simulations. Surface currents were shown to increase the speed of the homeward-migrating sockeye salmon, as well as to deflect the fish in a north-eastward direction. In spite of ocean currents, all Fraser River sockeye salmon were able to reach their destination with a fixed direction and bioenergetically efficient swimming speed when migration was delayed until the last month at sea. Compass orientation alone was shown to be a sufficient direction-finding mechanism for Fraser River sockeye salmon.