Histologic and immunohistochemical characterization of thymic epithelial tumours in the dog

Thymic epithelial tumour (TET) histologic subclassification has not been well described in the veterinary literature as it has in humans. The objective of this study was to identify and describe TET subtypes in dogs and to determine the utility of immunohistochemistry (IHC) in differentiating these subtypes. Samples were reviewed and classified according to a modified World Health Organization (WHO) criteria for human tumours of thymic origin. Signallment, presenting signs, treatment and survival data was collected from medical records. Histologic review confirmed the same subtypes as described in humans. Presence of high stage disease, pleomorphism, mitotic figures and capsular invasion was more common in atypical thymomas and thymic carcinomas than in thymomas. IHC was performed for GLUT‐1, CD5, CD117 and CK8/18; however, this was not useful in classifying the tumours.     

Translating and applying a simulation model to enhance understanding of grassland management

Each new generation of grassland managers could benefit from an improved understanding of how modification of nitrogen application and harvest dates in response to different weather and soil conditions will affect grass yields and quality. The purpose of this study was to develop a freely available grass yield simulation model, validated for England and Wales, and to examine its strengths and weaknesses as a teaching tool for improving grass management. The model, called LINGRA-N-Plus, was implemented in a Microsoft Excel spreadsheet and iteratively evaluated by students and practitioners (farmers, consultants, and researchers) in a series of workshops across the UK over 2 years. The iterative feedback led to the addition of new algorithms, an improved user interface, and the development of a teaching guide. The students and practitioners identified the ease of use and the capacity to understand, visualize and evaluate how decisions, such as variation of cutting intervals, affect grass yields as strengths of the model. We propose that an effective teaching tool must achieve an appropriate balance between being sufficiently detailed to demonstrate the major relationships (e.g., the effect of nitrogen on grass yields) whilst not becoming so complex that the relationships become incomprehensible. We observed that improving the user-interface allowed us to extend the scope of the model without reducing the level of comprehension. The students appeared to be interested in the explanatory nature of the model whilst the practitioners were more interested in the application of a validated model to enhance their decision making.     

A syndrome of facial paralysis of dairy calves in the Franklin district of New Zealand

AIM: To determine the aetiology of a syndrome characterised by facial paralysis in calves (facial paralysis syndrome; FPS); describe the epidemiology of the syndrome on an affected case farm; and define the intra-farm prevalence of affected calves, and inter-farm prevalence of affected dairy farms, in the Franklin district of New Zealand.

CASE HISTORY AND CLINICAL FINDINGS: An investigation was carried out on a town-supply dairy farm experiencing an outbreak of FPS in calves during the autumn of 2007, following a previous outbreak during the spring of 2006; 21 calves were affected in both outbreaks. Post-mortem examinations of three affected calves revealed no infectious aetiological agent in neurological tissues despite tests for viruses, bacteria and Mycoplasma species. Tests on hepatic tissues for vanadium toxicity were inconclusive.

SURVEY OF DAIRY FARMS: Results from a postal survey of 177/325 (54%) farms established the yearly prevalence of affected farms, based on farmer diagnosis, was 11%, and there was a median two (range 1–25) affected calves on those farms. There was no evidence of spatial clustering of affected farms after accounting for the underlying farm density, or of an increase in the number of affected farms between 2003 and 2007.

CLINICAL RELEVANCE: Facial paralysis syndrome is an unusual condition that has not been reported in other districts of New Zealand or in other countries. It is probable that this syndrome will continue to occur at a low to moderate prevalence, and have a significant impact on a small number of farms.     

Mast cell tumor invading the cornea in a horse

A 3‐year‐old Marwari mare was presented for evaluation of an irregular, reddish mass protruding from behind the right third eyelid. The mass appeared to arise at the ventral limbal area, involved the perilimbal bulbar conjunctiva and widely extended into corneal tissue. No other ocular or systemic abnormalities were detected at the time of presentation. The mass was surgically removed by lamellar keratectomy, with defocused CO₂ laser used as adjunctive therapy to treat the surgical exposed area and its surroundings. Histopathologic evaluation showed sheets of densely packed, well‐differentiated neoplastic mast cells separated by fibrovascular connective tissue. Nuclear staining for Ki‐67 was performed, and an average of 370 cells were positive per 1000 counted cells. Two months postoperatively, the surgical site was filled with flat fibrovascular and pigmented tissue, while the surrounding cornea was transparent with no superficial vascularization around the fibrotic scar. Thirty‐two months after treatment, no recurrence of the neoplasia was reported.     

Conservation implications of deforestation across an elevational gradient in the Eastern Arc Mountains, Tanzania

Deforestation is a major threat to the conservation of biodiversity, especially within global centers of endemism for plants and animals. Elevation, the major environmental gradient in mountain regions of the world, produces a rapid turnover of species, where some species may exist only in narrow elevational ranges. We use newly compiled datasets to assess the conservation impact of deforestation on threatened trees across an elevational gradient within the Eastern Arc Mountains of Tanzania. The Eastern Arc has suffered an estimated 80% total loss in historical forest area and has lost 25% of forest area since 1955. Forest loss has not been even across all elevations. The upper montane zone (>1800 m) has lost 52% of its paleoecological forest area, 6% since 1955. Conversely, the submontane habitat (800–1200 m) has lost close to 93% of its paleoecological extent, 57% since 1955. A list of 123 narrowly endemic Tanzanian Eastern Arc tree taxa with defined and restricted elevational ranges was compiled and analyzed in regard to mountain block locations, elevational range, and area of forest within each 100 m elevational band. Half of these taxa have lost more than 90% of paleoecological forest habitat in their elevational range. When elevational range is considered, 98 (80%) of these endemic forest trees should have their level of extinction threat elevated on the IUCN Red List. Conservation efforts in montane hotspots need to consider the extent of habitat changes both within and across elevations and target conservation and restoration efforts throughout these ecosystems’ entire elevational ranges.     

Optimal interpolation and isarithmic mapping of soil properties: I The semi‐variogram and punctual kriging

Kriging is a means of spatial prediction that can be used for soil properties. It is a form of weighted local averaging. It is optimal in the sense that it provides estimates of values at unrecorded places without bias and with minimum and known variance. Isarithmic maps made by kriging are alternatives to conventional soil maps where properties can be measured at close spacings. Kriging depends on first computing an accurate semi‐variogram, which measures the nature of spatial dependence for the property. Estimates of semi‐variance are then used to determine the weights applied to the data when computing the averages, and are presented in the kriging equations. The method is applied to three sets of data from detailed soil surveys in Central Wales and Norfolk. Sodium content at Plas Gogerddan was shown to vary isotropically with a linear semi‐variogram. Ordinary punctual kriging produced a map with intricate isarithms and fairly large estimation variance, attributed to a large nugget effect. Stoniness on the same land varied anisotropically with a linear semi‐variogram, and again the estimation error of punctual kriging was fairly large. At Hole Farm, Norfolk, the thickness of cover loam varied isotropically, but with a spherical semi‐variogram. Its parameters were estimated and used to krige point values and produce a map showing substantial short‐range variation.     

Describing ecosystem contexts with single‐species models: a theoretical synthesis for fisheries

Fished populations exist within complex ecosystems but are typically assessed using single‐species models. It is often lamented that stock assessments rarely account for other ecosystem components explicitly, but in most fisheries there are clear difficulties in implementing data‐intensive ecosystem‐based assessment approaches. Addressing these competing challenges requires prioritizing investments in expanded assessment frameworks. To provide high‐level conceptual guidance to such prioritization, here we use general analytical theory to identify (i) characteristics of fish stocks that tend to facilitate or inhibit the precision and accuracy of reference points from single‐species assessments, (ii) characteristics of ecosystem components that introduce the greatest bias/imprecision into single‐species reference points and (iii) warning signs within single‐species frameworks that important ecosystem components may not be adequately accounted for. We synthesize and expand on theories from various branches of applied mathematics addressing analogous questions. Our theory suggests that (i) slow population dynamics (relative to the dynamics of other ecosystem components) and a wide range of abundance observations promote precision and accuracy of single‐species reference points; (ii) ecosystem components that strongly influence the focal stock's growth, and change on similar timescales as the focal stock's abundance, introduce the greatest bias/imprecision to single‐species reference points; and (iii) signs of potential challenges for single‐species assessment include fast population dynamics, ‘hydra effects’ (i.e. abundance and fishing pressure simultaneously increase), and recently detected extinctions, invasions or regime shifts in closely connected ecosystem components. Our results generalize to other levels of abstraction and provide strategic insights complementing tactical simulation approaches such as management strategy evaluation.