Seroprevalence of economically important viral pathogens in swine populations of Trinidad and Tobago,West Indies

The objective of this study was to evaluate the seroprevalence and identify the strains of swine influenza virus (SwIV), as well as the seroprevalence of porcine parvovirus (PPV), transmissible gastroenteritis virus (TGEV), porcine reproductive and respiratory syndrome virus (PRRSV), porcine respiratory coronavirus (PRCV), porcine circovirus type 2 (PCV-2), and classical swine fever virus (CSFV) in pigs in Trinidad and Tobago (T&T). Blood samples (309) were randomly collected from pigs at farms throughout T&T. Serum samples were tested for the presence of antibodies to the aforementioned viruses using commercial ELISA kits, and the circulating strains of SwIV were identified by the hemagglutination inhibition test (HIT). Antibodies against SwIV were detected in 114 out of the 309 samples (37%). Out of a total of 26 farms, 14 tested positive for SwIV antibodies. HI testing revealed high titers against the A/sw/Minnesota/593/99 H3N2 strain and the pH1N1 2009 pandemic strain. Antibodies against PPV were detected in 87 out of the 309 samples (28%), with 11 out of 26 farms testing positive for PPV antibodies. Antibodies against PCV-2 were detected in 205 out of the 309 samples tested (66%), with 25 out of the 26 farms testing positive for PCV-2 antibodies. No antibodies were detected in any of the tested pigs to PRRSV, TGEV, PRCV, or CSFV.     

Genome evolution following host jumps in the Irish potato famine pathogen lineage

Many plant pathogens, including those in the lineage of the Irish potato famine organism Phytophthora infestans, evolve by host jumps followed by specialization. However, how host jumps affect genome evolution remains largely unknown. To determine the patterns of sequence variation in the P. infestans lineage, we resequenced six genomes of four sister species. This revealed uneven evolutionary rates across genomes with genes in repeat-rich regions showing higher rates of structural polymorphisms and positive selection. These loci are enriched in genes induced in planta, implicating host adaptation in genome evolution. Unexpectedly, genes involved in epigenetic processes formed another class of rapidly evolving residents of the gene-sparse regions. These results demonstrate that dynamic repeat-rich genome compartments underpin accelerated gene evolution following host jumps in this pathogen lineage.     

Polar transport of [3H]-IAA in apical shoot segments of different apple rootstocks

Summary

The polar transport of [³H]-indole-3-acetic acid in apical shoot segments of clonal apple rootstocks (M.27, M.9, M.26, MM.111 and MM.104) was investigated in the UK using a donor-receptor system. The month in which the experiment was undertaken had a significant influence on the uptake and transport of [³H]-indole-3-acetic acid activity; uptake and transport were greater in June and July (faster extension growth period) than in August (slower extension growth period). Shoot segments from dwarfing rootstocks (M.27 and M.9) showed smaller uptake and less transport of [³H]-indole-3-acetic acid than those from invigorating rootstocks (MM.111 and MM.104). [³H]-indole-3-acetic acid was transported to the agar receptors through shoot segments from all the rootstocks in June and July; those from dwarfing rootstocks showing lower levels of transport than those from invigorating ones. However, in August, [³H]-indole-3-acetic acid activity from the agar receptors was detected only from shoot segments of invigorating rootstocks, which continued to produce extension growth slowly, when dwarfing rootstocks had already ceased shoot extension growth. These results are discussed with reference to the effects of apple rootstocks on the size of scions.     

Relationships between bole and crown size for young urban trees in the northeastern USA

Knowledge of allometric equations can enable urban forest managers to meet desired economic, social, and ecological goals. However, there remains limited regional data on young tree growth within the urban landscape. The objective of this study is to address this research gap and examine interactions between age, bole size and crown dimensions of young urban trees in New Haven, CT, USA to identify allometric relationships and generate predictive growth equations useful for the region. This study examines the 10 most common species from a census of 1474 community planted trees (ages 4–16). Regressions were applied to relate diameter at breast height (dbh), age (years since transplanting), tree height, crown diameter and crown volume. Across all ten species each allometric relationship was statistically (p < 0.001) significant at an α-level of 0.05. Consistently, shade trees demonstrated stronger relationships than ornamental trees. Crown diameter and dbh displayed the strongest fit with eight of the ten species having an R² > 0.70. Crown volume exhibited a good fit for each of the shade tree species (R² > 0.85), while the coefficients of determination for the ornamentals varied (0.38 < R² < 0.73). In the model predicting height from dbh, ornamentals displayed the lowest R² (0.33 < R² < 0.55) while shade trees represented a much better fit (R² > 0.66). Allometric relationships can be used to develop spacing guidelines for commonly planted urban trees. These correlations will better equip forest managers to predict the growth of urban trees, thereby improving the management and maintenance of New England's urban forests.     

Identification of key performance indicators for on-farm animal welfare incidents: possible tools for early warning and prevention

Background

The objective of this study was to describe aspects of case study herds investigated by the Department of Agriculture, Fisheries and Food (DAFF) in which animal welfare incidents occurred and to identify key performance indicators (KPIs) that can be monitored to enhance the Early Warning System (EWS). Despite an EWS being in place for a number of years, animal welfare incidents continue to occur. Questionnaires regarding welfare incidents were sent to Superintending Veterinary Inspectors (SVIs), resulting in 18 herds being chosen as case study herds, 12 of which had a clearly defined welfare incident date. For each study herd, data on six potential KPIs were extracted from DAFF databases. The KPIs for those herds with a clearly defined welfare incident date were studied for a consecutive four year window, with the fourth year being the ''incident year'', when the welfare incident was disclosed. For study herds without a clearly defined welfare incident date, the KPIs were determined on a yearly basis between 2001 and 2009.

Results

We found that the late registration of calves, the use of on-farm burial as a method of carcase disposal, an increasing number of moves to knackeries over time and records of animals moved to ''herd unknown'' were notable on the case farms.

Conclusion

Four KPIs were prominent on the case study farms and warrant further investigation in control herds to determine their potential to provide a framework for refining current systems of early warning and prevention.     

Is barley yield in the UK sink limited?: II. Factors affecting potential grain size

In the absence of serious post-anthesis stress, the potential supply of assimilates for grain filling in barley appears to exceed the storage (sink) capacity of the grains. The sink capacity is a function of the number of grains per unit land area and their potential size. In order to investigate the contribution of pre and early post-anthesis factors in the control of potential grain weight, regression analysis has been used to analyse data from field experiments conducted on winter barley crops cv. Pearl grown at six sites across the UK between 2002 and 2004. Crops were grown under a comparable husbandry regime with a full crop protection, growth regulator and fertilizer programme. The mean grain weight (MGW) varied from 35 to 46 mg at 100% dry matter over 17 site/year combinations. The variation in MGW between site/years was associated with differences in the rate rather than the duration of grain filling. MGW did not relate well to any measure of above ground growth or crop structure at ear emergence (Zadoks GS59). There was a significant positive linear relationship between MGW and the amount of radiation (PAR) intercepted per unit grain number between ear emergence and the start of rapid grain filling (r² = 0.32, P = 0.023), but not over the whole grain filling period. This is consistent with the view that MGW is determined by potential grain size. A multiple regression model comprising five explanatory variables accounted for a much larger proportion of the total variation in MGW (r² = 0.72, P = 0.013) than PAR interception on its own. There were significant positive associations of MGW with post-anthesis radiation use efficiency and PAR intercepted from GS59 to the start of rapid grain growth (RGG), and significant negative associations with the shoot number per plant, mean air temperature from GS39–59 and mean daily rainfall from GS59-RGG. The results suggest that both pre and post-anthesis conditions operate in concert to determine the potential grain weight of barley in temperate climates. The dry weight and water content of grains and ears followed a common pattern during grain growth for all site/years when the percentage moisture content was used as an index to normalise different rates of development. Use of the above data for predicting potential grain weight of barley prior to harvest is discussed.     

How weed control and fertilisation influence tree physiological processes and growth at early establishment in an exotic F<Subscript>1</Subscript> hybrid pine plantation of subtropical Australia

Purpose

This study investigated how nitrogen (N) nutrition and key physiological processes varied under changed water and nitrogen competition resulting from different weed control and fertilisation treatments in a 2-year-old F₁ hybrid (Pinus elliottii Engelm var. elliottii?×?P. caribaea var. hondurensis Barr. ex Golf.) plantation on a grey podzolic soil type, in Southeast Queensland.

Materials and methods

The study integrated a range of measures including growth variables (diameter at ground level (DGL), diameter at breast height (DBH) and height (H)), foliar variables (including foliar N concentration, foliar δ¹³C and δ¹⁵N) and physiological variables (including photosynthesis (A_n), stomatal conductance (g_s), transpiration (E), intrinsic water use efficiency (WUE_i) (A/g_s) and xylem pressure potential (Ψ_XPP)) to better understand the mechanisms influencing growth under different weed control and fertilisation treatments. Five levels of weed control were applied: standard (routine), luxury, intermediate, mechanical and nil weed control, all with routine fertilisation plus an additional treatment, routine weed control and luxury fertilisation. Relative weed cover was assessed at 0.8, 1.1 and 1.6 years after plantation establishment to monitor the effectiveness of weed control treatments. Soil investigation included soil ammonium (NH₄ ⁺-N), nitrate (NO₃ ^?-N), potentially mineralizable N (PMN), gravimetric soil moisture content (MC), hot water extractable organic carbon (HWETC), hot water extractable total N (HWETN), total C, total N, stable C isotope composition (δ¹³C), stable N isotope composition (δ¹⁵N), total P and extractable K.

Results and discussion

There were significant relationships between foliar N concentrations and relative weed cover and between tree growth and foliar N concentration or foliar δ¹⁵N, but initial site preparation practices also increased soil N transformations in the planting rows reducing the observable effects of weed control on foliar δ¹⁵N. A positive relationship between foliar N concentration and foliar δ¹³C or photosynthesis indicated that increased N availability to trees positively influenced non-stomatal limitations to photosynthesis. However, trees with increased foliar N concentrations and photosynthesis were negatively related to xylem pressure potential in the afternoons which enhanced stomatal limitations to photosynthesis and WUE_i.

Conclusions

Luxury and intermediate weed control and luxury fertilisation positively influenced growth at early establishment by reducing the competition for water and N resources. This influenced fundamental key physiological processes such as the relationships between foliar N concentration, A _n, E, g_s and Ψ_XPP. Results also confirmed that time from cultivation is an important factor influencing the effectiveness of using foliar δ¹⁵N as an indicator of soil N transformations.

     

Importance of extensional rheological properties on fiber-enriched corn extrudates

Incorporation of insoluble fibers into extruded cereals severely limits their expansion and reduces crispness. The specific objective of this work was to investigate how corn bran and its fractions mixed with cornmeal affect rheology and extrudate expansion. Alkali-treated bran (ATB) and alkaline-soluble bran (ASB) were prepared from unmodified corn bran (UMB). Mixtures of the different corn bran fractions and degermed cornmeal having a 26% (w/w) of total dietary fibers were extruded in a twin screw extruder and expansion of the extrudates was determined. Melt shear rheology of mixtures of cornmeal and different corn bran fractions having a 20% total dietary fiber was determined using a capillary rheometer at 120 °C while the extensional rheology was determined using lubricated squeezing flow. The expansion of extrudates containing ATB was larger than those containing UMB, while extrudates containing ASB showed a greater expansion that was close to that of the control. Addition of UMB to cornmeal increased shear and extensional viscosity significantly as compared to the control. ATB addition increased the shear viscosity of the mixture to a small extent but showed the highest extensional viscosity amongst the samples. Addition of ASB resulted in mixtures having lower shear and extensional viscosities than the control.