Effect of hydrodynamics factors on sediment flocculation processes in estuaries

Purpose

Cohesive sediment is able to flocculate and create flocs, which are larger than individual particles and less dense. The phenomenon of flocculation has an important role in sediment transport processes such as settling, deposition and erosion. In this study, laboratory experiments were performed to investigate the effect of key hydrodynamic parameters such as suspended sediment concentration and salinity on floc size and settling velocity. Results were compared with previous laboratory and field studies at different estuaries.

Materials and methods

Experimental tests were conducted in a 1-L glass beaker of 11-cm diameter using suspended sediment samples from the Severn Estuary. A particle image velocimetry system and image processing routine were used to measure the floc size distribution and settling velocity.

Results and discussion

The settling velocity was found to range from 0.2 to 1.2 mm s^?1. Settling velocity changed in the case of increasing suspended sediment concentration and was controlled by the salinity. The faster settling velocity occurred when sediment concentration is higher or the salinity is lower than 2.5. On the other hand, at salinities higher than 20, in addition to increasing SSC, it was found that the situation was reversed, i.e. the lower the sediment concentration, the faster the settling velocity.

Conclusions

Sediment flocculation is enhanced with increasing sediment concentration but not with increasing salinity.

     

Phosphodiesterase isoenzymes in equine platelets and their influence on platelet adhesion

OBJECTIVE: To determine the phosphodiesterase (PDE) isoenzymes in equine platelets and evaluate their influence on platelet adhesion. SAMPLE POPULATION: Platelets obtained from healthy New Forest Pony geldings that ranged from 12 to 20 years of age (mean +/- SEM, 17.3 +/- 1.1 years). PROCEDURES: PDE isoenzyme activity in equine platelets was determined by use of a 2-step radioactive assay. Functional importance of PDE isoenzymes was established by use of selective inhibitors in a colorimetric adhesion assay. RESULTS: PDE1, PDE2, PDE3, and PDE5 and small amounts of PDE4 were found in equine platelets. Inhibition of PDE3 abolished platelet adhesion almost completely, whereas inhibition of PDE4 and PDE5 had little effect. CONCLUSIONS AND CLINICAL RELEVANCE: Function of equine platelets can be influenced by inhibition of PDE3. Selective PDE3 inhibitors may be clinically useful to regulate platelet function. They offer the advantage of increased potency with fewer adverse effects, compared with those for nonselective PDE inhibitors.     

Molecular subtype-specific clinical diagnosis of prion diseases

Sporadic Creutzfeldt-Jakob disease (sCJD) is a rare transmissible disease caused by accumulation of pathological prion protein (PrP(sc)) in the CNS. According to the codon 129 polymorphism (methionine or valine) and the prion protein type 1 or 2, a classification into distinct subtypes was established. Further analysis of these subtypes detected atypical clinical forms with longer disease duration or younger age at onset. The CJD subtype influences sensitivity of the technical investigations such as 14-3-3 in CSF, periodic sharp wave complexes in the EEG or hyperintense basal ganglia in MRI. A further characterization of these subtypes is important for reliable diagnosis and identification of rare disease variants. The aim is to establish specific patterns of test results and clinical findings. These improvements in diagnostics may be the reason for the apparent increase in sCJD incidence in Germany from 0.9 in 1994 to 1.6 in a million in 2005. Despite careful surveillance, no patient with variant CJD has been detected to date in Germany. Here we present the data of the CJD surveillance of the last 13 years. Additionally, the improvements in diagnostics and differential diagnosis are discussed.     

Molecular Modeling of the N-terminal Regions of High Molecular Weight Glutenin Subunits 7 and 5 in Relation to Intramolecular Disulfide Bond Formation

Analyses of cystine peptides derived from the high molecular weight glutenin subunits (HMW-GS) 5 and 7 indicate that, in spite of a distinct sequence homology between the two subunits in the N-terminal region, different disulfide linkages of cysteine residues are present in these regions. To investigate the structural basis for these experimental results, the conformational structures of the polypeptide chains corresponding to the N-terminal regions (first 50 amino acids) of the wheat HMW-GS 5 and 7 were modeled by computer methods. Secondary structures were predicted by the method of Rost and Sander (1993) and, to the extent appropriate, applied to the constructed polypeptide chains. The resulting structures were energy-minimized and subjected to simulated heating and dynamic equilibration. In the final structure of subunit 5, the first two cysteines were located in a region of continuous α-helix. If folding to the helical form occurs rapidly during biosynthesis as expected, the distance between the sulfhydryl groups of these two cysteines would be great enough (≈2.2 nm) to make intramolecular disulfide bond formation unlikely. Although a somewhat similar region of α-helix was predicted for the subunit 7, in some predictions the helix was interrupted between the first two cysteines, and this break was assigned either extended structure or arbitrarily modeled as an inverse γ-turn. In the final structure of subunit 7 with the assigned inverseγ-turn, after energy minimization, heating, and dynamics, the two cysteines approached one another closely (≈0.4 nm). Formation of an intramolecular disulfide bond appeared a likely possibility. This model is in accord with experimental evidence for this latter intramolecular bond (Köhler et al 1993). In agreement with the modeling, an equivalent intramolecular disulfide bond of subunit 5 has not been found and experimental evidence for a different arrangement is presented.     

Rice roots and CH4 oxidation: the activity of bacteria, their distribution and the microenvironment

Irrigated rice fields account for 10–30% of global methane emissions. Rice plants ventilate the soil and enlarge the oxic–anoxic interface by their root system, thus supplying the necessary O₂ to aerobic CH₄ oxidizing bacteria (MOB). Rice plants (Oryza sativa type japonica var. Roma) were grown in microcosms in a greenhouse. The roots were sandwiched between two blocks of flooded rice field soil separated by a nylon gauze bag. A root mat developed which mimicked the dense root texture in the upper layer of a natural rice field. Flux measurements under oxic and anoxic conditions showed that CH₄ was oxidized with a constant rate of 19% of the anoxically emitted CH₄, suggesting that CH₄ oxidation in the rhizosphere was at least sometimes limited by CH₄ availability. Washed rice roots could both produce and oxidize CH₄, depending upon incubation conditions. CH₄ production by washed rice roots accounted for at most 10% of the CH₄ emitted under anoxic conditions. Initial CH₄ oxidation rates of washed roots equaled oxidation rates calculated from the difference between oxic and anoxic fluxes in situ. Oxidation rates became twice as high after an induction period of 20 h, indicating a limitation by O₂ or CH₄ in situ. The micro-environmental conditions near to the root mat were measured using microelectrodes for O₂, redox potential and NH₄⁺ and diffusion probes for CH₄. Up to 42 μM O₂ was detected in the root mat and concentrations were >2.5 μM in 45% of all measurements. In the bulk soil, no O₂ was detected below 2 mm depth, but the root mat significantly increased the redox potential. Plant roots and associated bacteria decreased porewater CH₄ and NH₄⁺ concentrations. In the root mat, concentrations of dissolved CH₄ were below the detection limit of our probes (<5 μM). Cell numbers of MOB increased with time in the rhizosphere and in the rhizoplane. MOB and aerobic heterotrophic bacteria (AHB) each numbered from 10⁶ to 10⁸ cells g⁻¹ dry weight of soil or root biomass). Active MOB occurred near to a root mat similar to the dense root texture in the upper layer of rice fields. We speculate about O₂ or CH₄ limitation of MOB.     

Toward pollen sterility in German chamomile (Matricaria chamomilla)–Conventional breeding approaches of cytoplasmic/genic male sterility and chemical emasculation

Pollen sterility (PS) in mother lines is crucial for hybrid crossings in plant breeding. 21 di- (2x) and tetraploid (4x) accessions of the hermaphroditic chamomile were screened for spontaneous, thermic or gametocide induced PS. Two crossing trials with the diploid accessions 'Bona' (BON) and 'Hungary 2' (HUN2) should specify maternally inherited cytoplasmic male sterility (CMS). Progeny thereof showed increased PS. BON as mother (BH) entailed means of 30 and 22% PS, versus 8% and 20% after reciprocal crossings. Backcrosses of BH with HUN2 in paternal and maternal direction revealed increasing mean PS (24% and 32%), without verification of CMS. A split plot design of 100 individuals treated with four chemical gametocides analyzed PS, seed set, germination rate and whole plant damage. Tri-iodobenzoic acid caused the highest PS (43%). Progeny of two plants (2x, 4x) with degenerated anthers without pollen, showed 100% PS either in tetraploid F₁ and F₂ (4% and 11%) or in diploid F₂ and F₃ (26% and 23%). High temperature (30/28°C day/night) decreased the male fertility to some extent.     

Gastrointestinal helminths may affect host susceptibility to anthrax through seasonal immune trade-offs

Background

Development rates of Aedes aegypti are known to vary with respect to many abiotic and biotic factors including temperature, resource availability, and intraspecific competition. The relative importance of these factors and their interactions are not well established across populations. We performed meta-analysis on a dataset of development rate estimates from 49 studies.

Results

Meta-analytic results indicated that the environmental factor of temperature is sufficient to explain development rate variability in Ae. aegypti. While diet and density may greatly impact other developmental phenotypes, these results suggest that for development rate these factors should never be considered to the exclusion of temperature. The effect of temperature on development rate is not homogenous or constant. The sources of heterogeneity of the effect of temperature are difficult to analyze due to lack of consistent reporting of larval rearing methods.

Conclusions

Temperature is the most important ecological determinant of development rate in Ae. aegypti, but its effect is heterogeneous. Ignoring this heterogeneity is problematic for models of vector population and vector-borne disease transmission.     

Structure-based assembly of protein complexes in yeast

Images of entire cells are preceding atomic structures of the separate molecular machines that they contain. The resulting gap in knowledge can be partly bridged by protein-protein interactions, bioinformatics, and electron microscopy. Here we use interactions of known three-dimensional structure to model a large set of yeast complexes, which we also screen by electron microscopy. For 54 of 102 complexes, we obtain at least partial models of interacting subunits. For 29, including the exosome, the chaperonin containing TCP-1, a 3'-messenger RNA degradation complex, and RNA polymerase II, the process suggests atomic details not easily seen by homology, involving the combination of two or more known structures. We also consider interactions between complexes (cross-talk) and use these to construct a structure-based network of molecular machines in the cell.     

Characterization of a novel coronavirus associated with severe acute respiratory syndrome

In March 2003, a novel coronavirus (SARS-CoV) was discovered in association with cases of severe acute respiratory syndrome (SARS). The sequence of the complete genome of SARS-CoV was determined, and the initial characterization of the viral genome is presented in this report. The genome of SARS-CoV is 29,727 nucleotides in length and has 11 open reading frames, and its genome organization is similar to that of other coronaviruses. Phylogenetic analyses and sequence comparisons showed that SARS-CoV is not closely related to any of the previously characterized coronaviruses.