Different longitudinal distribution patterns of native white-spotted charr and non-native brown trout in Monbetsu stream, Hokkaido, northern Japan

Abstract  This study focused on longitudinal distribution patterns of native white-spotted charr and non-native brown trout in a mountainous stream in Hokkaido, Japan. Brown trout ratio, which is the proportion of brown trout in the catch of salmonids, was decreasing from downstream to upstream. Brown trout ratio correlated negatively with water temperature. Thus, our results suggested that temperature may influence the possible competition between native white-spotted charr and non-native brown trout.     

Purification and characterization of a 630 kDa bacterial killing metalloprotease (KilC) isolated from plaice Pleuronectes platessa (L.), epidermal mucus

Antibacterial chemicals in the mucus of fish such as lysozyme, lectins, peptides and proteases provide an efficient first line of defence against pathogens. This study shows that there are at least three antibacterial proteins in plaice skin mucus in addition to lysozyme. One of these proteins is responsible for approximately 74% of the antibacterial activity and is a 630 kDa protease complex designated KilC (bacterial killing metalloprotease C). Purified KilC kills the bacteria Staphylococcus aureus, Escherichia coli, Bacillus subtilis and Pseudomonas aeruginosa efficiently. The protease activity of KilC is dependent upon the divalent cation Mg(2+) and shows pH dual optima of 5.0 and 8.0. The enzyme has a temperature optimum of 25 degrees C and is made up of at least five different sized peptides. Studies with protease inhibitors show that the catalytic site of KilC may be cysteine- or serine protease-like. KilC may kill bacterial cells by acting directly upon the bacteria or by producing low molecular weight bioactive compounds such as peptides.     

Genetic variations in survival of rohu carp (Labeo rohita, Hamilton) after Aeromonas hydrophila infection in challenge tests

A challenge test against Aeromonas hydrophila was conducted using 2062 rohu carp (Labeo rohita) fingerlings obtained from 52 dams and 87 sires (87 full-sib families) of two year-classes (2003 and 2004). Attempts to establish a cohabitant challenge model were not successful. Therefore, fish were challenged by intraperitoneal injection with A. hydrophila in two replicate tanks per year-class, and dead fish were collected hourly. The mortality reached its peak at 16–22 h after challenge and had almost completely stopped after 58 h. The test was terminated after 382 h at which the average survival was 43.9 and 48.9% in the two 2003 year-class tanks, and 77.1 and 35.8% in the two 2004 year-class tanks. Heritability estimates for survival were obtained from sire and dam threshold models (THR) and sire and dam linear repeatability models (LINR). For both types of models the heritability estimates based on data from single tanks were not consistent. For both year-classes, data from one of the two challenged tanks demonstrated significant additive genetic variation in survival during the A. hydrophila infection, whereas the heritability estimates were not significantly different from zero for the other tank. Further, genetic correlation between survivals in the two replicate tanks in each year-class was not significantly different from zero. The differential results from the replicate tanks demonstrate that additional challenge test experiments are needed before firm conclusions can be drawn about the magnitude of additive genetic variation for survival to aeromonasis in rohu carp. A cohabitant challenge model that allows the testing of important defence mechanisms in the skin and mucous membranes of the fish might have been more appropriate. To establish a valid cohabitant challenge model for rohu carp should be given high priority.     

Rearing performance of Clarias batrachus larvae: Effect of age at stocking on growth and survival during fingerling production

An experiment was conducted to evaluate the rearing performance of different larval stages for optimum growth and survival during fingerling production of Clarias batrachus with an aim to reduce the rearing time of the catfish larvae in a hatchery system. The larvae were reared for 5, 10 and 15 days before stocking them in the nursery tanks. No significant (P < 0.05) difference could be found in length increment at the end of first week of rearing. But the total length was reduced during rest three weeks in five days old larvae compared to that of other two higher age groups. In 5 days old larvae the reduced weight (P < 0.05) was observed during the entire rearing period. However, the specific growth rate (SGR) did not vary among the groups. The survival rate as well as total biomass was decreased while stocking five days old larvae for rearing, compared to that of other two age groups.     

Effect of Growth Regulators and Ethanol on Termination of Dormancy in Potato Tubers

The main objective of this study was to find the best practice of inducing the sprouting of dormant potato tubers. We compared two protocols of breakage of dormancy, which are based on dipping excised potato eyes in an aqueous solution of gibberellic acid (GA₃) and kinetin (standard 1) or in the aqueous solution of GA₃, thiourea, and daminozide (standard 2), with a newly reported approach based on ethanol. We tested the effect of ethanol alone or in combination with GA₃ and/or kinetin on dormancy release and sprouting of the potato tubers. As a model, we used two potato genotypes (cultivars Pasat and Dorota), with long dormancy of 5 and 10 weeks respectively. We showed that the standard 2 was the most effective treatment both for dormancy breaking and in promoting sprout growth, especially for cv. Dorota, for which the treatment induced 82.3% of tuber eye-plugs to sprout 28 days after treatment and to produce 93.2% of emerged plants after subsequent 28 days of cultivation in the greenhouse. For this cultivar, similar efficacy was observed for the combination of 4% ethanol with GA₃ and kinetin. The same concentration of ethanol combined with GA₃ but without kinetin was the most efficient treatment for breaking dormancy of cultivar Pasat. However, the difference between the various treatment combinations was statistically insignificant. Ethanol alone or in combination with kinetin poorly induced breakage of dormancy, confirming the main role of GA₃ in artificial dormancy breaking. Thus our study showed that the standard 2 is the most effective approach for breakage of dormancy at least with long term-dormancy cultivars.     

Genetic analysis of early-maturing maize (Zea Mays L.) inbred lines under stress and nonstress conditions

Early-maturing maize (Zea Mays L.) germplasm developed from diverse sources has the potential for use in developing maize hybrids suitable for increasing maize production in the dry ecologies of eastern Africa. A diallel study was conducted to estimate general combining ability (GCA) of 12 early-maturing maize inbred lines, identify potential single-cross hybrids for use as parents, assess genetic diversity among the inbred lines, and relate genetic distance to specific combining ability (SCA) and hybrid performance. Sixty-six F₁ diallel hybrids were evaluated under optimal and drought stress conditions at four locations in Kenya and Uganda. The parental inbred lines were genotyped using 94 single nucleotide polymorphism (SNP) markers. Additive gene action was more important than nonadditive gene action for inheritance of grain yield (GY) under optimal conditions. However, nonadditive gene effects were more important in the inheritance of GY under drought and across all environments. Inbred lines CKL0722, VL058014, and CZL0724 were among the best with positive GCA effects for GY across both optimal and drought stress conditions. The correlation between SCA and both genetic distance and F₁ GY was significant under both drought stress and across all environments. Inbred lines with desirable GCA effects for GY and other agronomic traits and hybrids with good performance under both optimal and drought stress conditions are potential parents for development of various types of high-yielding, stress-tolerant, and early-maturing hybrids.     

Agronomic fortification of rice grains with secondary and micronutrients under differing crop management and soil moisture regimes in the north Indian Plains

Although the System of Rice Intensification (SRI) has been reported to produce higher paddy (Oryza sativa L.) yields with better-quality grains, little research has addressed the latter claim. This study investigated the interactive effects of rice cultivation methods with different irrigation schedules and plant density on the uptake and concentration of sulfur (S), zinc (Zn), iron (Fe), manganese (Mn) and copper (Cu) in the grain and straw of two rice cultivars during two rainy seasons in the northern plains of India. As the two seasons differed in amounts of rainfall, there were impacts of soil moisture differences on nutrient uptake. Plots with SRI cultivation methods enhanced the grain uptake and concentrations of S, Zn, Fe, Mn and Cu by 36, 32, 28, 32 and 63%, respectively, compared to conventional transplanting (CT). Under SRI management, the highest concentrations of S, Zn and Cu in the grain and straw occurred with irrigation intervals scheduled at 3 days after disappearance of ponded water (DADPW; 3_D), whereas Fe and Mn concentrations in the grain and straw were higher with irrigation at 1 DADPW (1 _D ) compared with plots under 3 _D or 5 DADPW (5 _D ). The higher nutrient uptakes were also manifested in higher grain yield in 1 _D and 3 _D plots (by 9 and 6%, respectively) compared with 5 _D . Wider spacing (25 × 25 cm) compared with closer spacing (20 × 20 cm) significantly increased yield and the uptake and concentrations of all the said nutrients in the grains. When comparing the performance of two cultivars, the total uptakes of Zn, Fe, Mn and Cu in both grain and straw were significantly more in Hybrid 6444 than the improved variety Pant Dhan 4. Overall, SRI crop management compared to CT practices led to more biological fortification of rice grains with respect to S and the four micronutrients studied, giving a concomitant yield advantage of about 17% on average in this region.     

Modeling the water and nitrogen transports in a soil–paddy–atmosphere system using HYDRUS-1D and lysimeter experiment

Efficient water and fertilizer use is of paramount importance both in rain-fed and irrigated rice cultivation systems to tread off between the crop water demand during the dry spell and the fertilizer leaching. This lysimeter study on paddy in a lateritic sandy loam soil of the eastern India, to simulate the water and solute transports using the HYDRUS-1D model, reveals that this model could very well simulate the soil depth-specific variations of water pressure heads and nitrogen (N) concentrations with the efficiency of >86 and 89%, respectively. The change in the level of water ponding depth did not have a significant effect on the time to peak and the temporal variability of N concentration in the bottom soil layer. The lysimeter-scale water balance analysis indicated that the average deep percolation loss and crop water use were 35.01 ± 2.03 and 39.74 ± 1.49% of the total water applied during the crop growth period, respectively. Similarly, the amount of N stored in the plant and lost through soil storage, deep percolation, and other losses (mineralization, denitrification, and gaseous N loss to the atmosphere through plant leaves) were 1.60 ± 0.16, 0.17 ± 0.04, 12.00 ± 0.48, and 86.23 ± 0.41% of the total applied nitrogen, respectively. The simulation results reveal that a constant ponding depth of 3 cm could be maintained in paddy fields to reduce the N leaching loss to 7.5 kgN/ha.     

Influence of crop establishment methods on yield,economics and water productivity of rice cultivars under upland and lowland production ecologies of Eastern Indo-Gangetic Plains

A field study on assessment of crop establishment methods on yield, economics and water productivity of rice cultivars under upland and lowland production ecologies was conducted during wet seasons (June–November) of 2012 and 2013 in Eastern Indo-Gangetic Plains of India. The experiment was laid-out in a split-plot design (SPD) and replicated four times. The main-plot treatments included three crop establishment methods, viz. dry direct-seeded rice (DSR), system of rice intensification (SRI) and puddled transplanted rice (PTR). In sub-plots, five rice cultivars of different groups like aromatic (Improved Pusa Basmati 1 and Pusa Sugandh 5), inbreds (PNR 381 and Pusa 834) and hybrid (Arize 6444) were taken for their evaluations. These two sets of treatments were laid-out simultaneously in two production ecologies, upland and lowland during both years. In general, lowland ecology was found favourable for rice growth and yield and resulted in 13.2% higher grain yield as compared to upland ecology. Rice grown with SRI method produced 19.4 and 7.0% higher grain yield in 2012 and 20.6 and 7.1% higher in 2013, over DSR and PTR. However, PTR yielded 13.1 and 14.5% higher grain over DSR during 2012 and 2013, respectively. On an average, Arize 6444 produced 26.4, 26.9, 28.9 and 54.7% higher grain yield as compared to PS 5, P 834, PNR 381 and IPB1, respectively. Further, the interaction of production ecologies × crop establishment methods revealed that, in upland ecology, SRI recorded significantly higher grain yield as compared to PTR and DSR, but in lowland, grain yield resulting from SRI was similar to the yield obtained with PTR and significantly higher than DSR. The latter two methods (PTR and DSR) yielded alike in lowland ecology in both study years. The production ecologies × crop establishment methods × cultivars interaction on grain yield showed that the growing of Arize 6444 cultivar using SRI method in upland ecology resulted in the higher grain yield (8.87 t/ha). But the cost of production was also highest in SRI followed by PTR and DSR across production ecologies and cultivars. Cultivation of hybrid (Arize 6444) involved higher cost of production than all other cultivars. Irrespective of crop establishment methods and cultivars, gross returns, net returns and B:C ratio were significantly higher in lowland compared to upland ecology. Owing to higher grain yield, SRI method fetched significantly higher gross returns and net returns over PTR and DSR. Average increase in net return with Arize 6444 was 68.8, 41.0, 37.7 and 33.1% over IPB 1, PNR 381, P 834 and PS 5, respectively. There was a saving of 30.7% water in SRI and 19.9% in DSR over PTR under upland ecology. Similarly in lowland ecology, water saving of 30.2% was observed in SRI and 21.2% in DSR over PTR. Due to higher yield and saving on water, SRI returned significantly higher total water productivity (TWP) (5.9 kg/ha-mm) as compared to DSR (3.5 kg/ha-mm) and PTR (3.6 kg/ha-mm) under upland ecology. In lowland ecology, also SRI (6.2 kg/ha-mm) resulted in higher TWP as compared to other two methods. However, DSR gave significantly higher TWP as compared to PTR. Among cultivars, hybrid Arize 6444 recorded the highest TWP in both upland and lowland production ecologies across crop establishment methods. Hence, growing of hybrid Arize 6444 with SRI method can enhance rice productivity and water-use efficiency in lowland and upland production ecologies of Eastern Indo-Gangetic Plains and in other similar regions.