Putative human and avian risk factors for avian influenza virus infections in backyard poultry in Egypt

Highly pathogenic influenza A virus subtype H5N1 causes significant poultry mortality in the six countries where it is endemic and can also infect humans. Egypt has reported the third highest number of poultry outbreaks (n = 1084) globally. The objective of this cross-sectional study was to identify putative risk factors for H5N1 infections in backyard poultry in 16 villages in Damietta, El Gharbia, Fayoum, and Menofia governorates from 2010–2012. Cloacal and tracheal swabs and serum samples from domestic (n = 1242) and wild birds (n = 807) were tested for H5N1 via RT-PCR and hemagglutination inhibition, respectively. We measured poultry rearing practices with questionnaires (n = 306 households) and contact rates among domestic and wild bird species with scan sampling. Domestic birds (chickens, ducks, and geese, n = 51) in three governorates tested positive for H5N1 by PCR or serology. A regression model identified a significant correlation between H5N1 in poultry and the practice of disposing of dead poultry and poultry feces in the garbage (F = 15.7, p < 0.0001). In addition, contact between domestic and wild birds was more frequent in villages where we detected H5N1 in backyard flocks (F = 29.5, p < 0.0001).     

Prenatal Metanephrogenesis of The Camel: Morphological Evidence of Epithelial–Mesenchymal Interaction

The present investigation examined histogenesis of epithelial, stromal and angiogenic elements of the prenatal camel permanent or metanephric kidney. The primitive metanephros was first observed at the 13‐mm crown vertebral rump length (CVRL) stage as an ovoid structure composed of a centrally located epithelial ureteric bud and peripheral circumscribed masses of undifferentiated mesenchymal cells. The first morphological evidence of glomerulogenesis was observed at the 28‐mm CVRL stage. Developing renal corpuscles became obvious at the 35‐mm CVRL stage. At the 60‐mm CVRL stage, the epithelial renal pelvis gave rise to tubular branches that extended towards the cortical zone. These branches represented the presumptive collecting ducts. Differentiation of renal tubules into the proximal and distal convoluted tubules was observed at the 95‐mm CVRL stage. At the 130‐mm CVRL stage, the renal medulla was clearly delineated into medullary pyramids, which in association with the corresponding cortical caps formed the morphological basis of the renal lobar formation. A gradual nephrogenic decline was noticed from the 940‐mm CVRL on; however, the process of nephrogenesis persisted throughout all the studied foetal stages.     

Prenatal Development of the Eye Tunics in the Dromedary Camel (Camelus dromedarius)

Studies of ocular development in the dromedary camel (Camelus dromedarius) have not been reported previously. The aim of the present investigation was therefore to document the major landmarks and the time course in the prenatal development of the eye tunics in dromedary camel and its accommodation with the surrounding hard environment of the desert. Serial histological sections of dromedary camel embryos and foetuses were used. Age estimation was made on the basis of gestational size, crown vertebral‐rump length (CVRL), which ranged 1.2–110 cm. The eye of the dromedary camel developed in a similar manner to that of the human and domestic animals eyes; the principal differences were in the time of occurrence of certain developmental events, pigmented peripheral cornea near the limbus, a remarkably thickened Descemet's membrane and pigmentation in the corneo‐scleral junction, which represent an adaptive modification in relation to a severe environment.     

Herbaceous species diversity in relation to fire severity in Zagros oak forests,Iran

Zagros forests are mainly covered byQuercus brantii L. coppices and oak sprout clumps occupy the forest area like patches. We investigated post-fire herbaceous diversity in the first growing season after fire. For this purpose neighboring burned and unburned areas were selected with the same plant species and ecological conditions. The data were collected from areas subjected to different fire severities. Overall 6 treatments were considered with respect to fire severity and the mi-crosites of inside and outside of oak sprout clumps including： unburned inside and outside of sprout clumps （Ni and No）, inside of sprout clumps that burned with high fire severity （H）, inside of sprout clumps that burned with moderate fire severity （M）, outside of sprout clumps that burned with low fire severity （OH and OM）. Different herbaceous com-position was observed in the unburned inside and outside of oak sprout clumps. The species diversity and richness were increased in treatments burned with low and moderate fire severity. However, in treatment burned with high fire severity （H）, herbaceous cover was reduced, even-ness was increased, and richness and diversity were not significantly changed. We concluded that besides the microsites conditions in forest, fire severity is an inseparable part of the ecological effect of fire on her-baceous composition.     

落叶型大丽轮枝菌T-DNA插入突变体库的构建

采用ATMT技术建立大丽轮枝菌落叶型菌株XJ2008菌株的T-DNA插入突变体文库,共获得6 043个突变体。从中随机挑选104个突变体,以野生型XJ2008菌株为参照,评价其致病性、菌落生长速率、分生孢子及微菌核的产生能力等。结果表明,有12.5%的突变体丧失产孢能力,4.8%的突变体的生长速率显著减慢,8.7%的突变体的生长速率显著加快,12.5%的突变体丧失产生微菌核的能力,47.1%的突变体的致病性显著低于野生型菌株XJ2008,且突变体2-736、2-740、2-745的病情指数分别约为野生型菌株XJ2008的0.184、0.168和0.197倍。该突变体库突变体遗传稳定性好,性状多样性丰富。     

Conservation of a Tropical Wet Semi-evergreen Forest Ecosystem by an Indigenous Community in the Bandarban Hill District of Bangladesh: The Role of Intervention

Indigenous communities in the Chittagong Hill Tracts (CHT) of Bangladesh had been conserving small patch of forests, commonly called village common forests (VCFs), especially for drinking water and non-timber forest produce. The size of VCFs has been decreasing, due to increasing population and conversion of forests for shifting cultivation. To restore the degraded forest resources and conserve the forest ecosystems in the VCF of the CHT, an intervention was undertaken in Bandarban, Bangladesh by Arannayk Foundation, an organization established jointly by the Government of Bangladesh and the United States of America. A training program on leadership, organizational development and alternative income generating activities was implemented to build the capacity of the members of the VCF management committee. The impact of the interventions was measured at the end of third year. Incomes of VCF-dependent communities were found to increase with resultant reduction of their dependence on VCFs. The intervention encouraged women’s participation in forest management and facilitated a written format of the constitution of the VCF management. The study identified that more training and awareness-raising activities are needed to ensure sustainability of the interventions. Mobilizing funds for the communities for sustainable alternative livelihoods was found effective. Appropriate compensation for conservation was found to make the restoration and conservation activities sustainable.     

Determination of Heat Requirements and Effective Heat Summations of Some Pomegranate Cultivars Grown in Southern Anatolia

Temperature (high and low) is one of the most limiting environmental factors for growth and production of fruits in different parts of the world. For temperate-zone fruit species, a certain total heat requirements are needed in order to obtain ripe fruits. The aim of this study was to determine heat requirements of three commercial pomegranate cultivars (‘Suruc’, ‘Katirbasi’ and ‘Hicaznar’) grown in Southern Anatolia region. The cultivars showed a narrower range of heat requirements for flowering (growing degree hours, GDH), i.e. ‘Suruc’ (25,000), ‘Katirbasi’ (25,270), ‘Hicaznar’ (28,000) and a wide range of heat requirements for fruit ripening, i.e. ‘Suruc’ (73,670), ‘Katirbasi’ (74,105) and ‘Hicaznar’ (88,052) GDH. Under the Sanliurfa province conditions, two years average of effective heat summation requirement from bud swelling to 50 % flowering stage for ‘Suruc’, ‘Katirbasi’ and ‘Hicaznar’ cultivars are calculated as 643, 655 and 718 growing degree days (GDD) and from bud swelling to harvest are 2734, 2802 and 3289 GDD. It can be concluded that the effective heat summation of Sanliurfa province is enough for commercial growing for all pomegranate cultivars.     

Rates of inbreeding and genetic diversity in Iranian Holstein Cattle

The accumulation of inbreeding and the loss of genetic diversity is a potential problem in Holstein dairy cattle. The goal of this study was to estimate inbreeding levels and other measures of genetic diversity, using pedigree information from Iranian Holstein cattle. Edited pedigree included 1 048 572 animals. The average number of discrete generation equivalents and pedigree completeness index reached 13.4 and 90%, respectively. The rate of inbreeding was 0.3% per year. Effective number of founders, founder genomes, non‐founders and ancestors of animals born between 2003 and 2011 were 503, 15.6, 16.1 and 25.7, respectively. It was proven that the unequal founder contributions as well as bottlenecks and genetic drift were important reasons for the loss of genetic diversity in the population. The top 10 ancestors with the highest marginal genetic contributions to animals born between 2003 and 2011 and with the highest contributions to inbreeding were 48.20% and 63.94%, respectively. Analyses revealed that the most important cause of genetic diversity loss was genetic drift accumulated over non‐founder generations, which occurred due to small effective population size. Therefore, it seems that managing selection and mating decisions are controlling future co‐ancestry and inbreeding, which would lead to better handling of the effective population size.     

Effect of increasing levels of seven tree species extracts added to a high concentrate diet on in vitro rumen gas output

This study was conducted to investigate the effects of increasing levels of extracts of Byrsonima crassifolia, Celtis pallida, Enterolobium cyclocarpum, Fraxinus excelsior, Ficus trigonata, Phoradendrom brevifolium and Prunus domestica on in vitro gas production (GP) and ruminal fermentation of a high concentrate diet. Plant extracts were prepared at 1 g dry matter (DM)/8 mL of solvent mixture (methanol : ethanol : water, 1:1:8) and added at levels of 0, 0.6, 1.2 and 1.8 mL/g DM of a high concentrate diet. In vitro GP was recorded at 2, 4, 6, 8, 10, 12, 24, 48 and 72 h of incubation. Increasing addition of extracts linearly increased (P < 0.001), the GP₂₄, GP₄₈ and GP₇₂ (mL/g DM), and linearly decreased (P < 0.001), the discrete GP lag time. Moreover, increasing extract doses linearly increased (P < 0.001) the asymptotic GP and decreased (P < 0.001) the rate of GP. GP₆ was not impacted by treatments and GP₁₂ increased linearly (P = 0.01) with increasing addition of extracts. Rumen pH declined linearly (P < 0.05) with increasing doses of extracts added. As no interactions (P > 0.05) occurred between the extracts and doses, it could be conclude that all extracts positively modified rumen fermentation at doses of 1.2 to 1.8 mL extract/g diet DM.     

Dynamics of appetite in three fish species (Gasterosteus aculeatus, Phoxinus phoxinus and Carassius auratus gibelio) after feed deprivation

The temporal dynamics of appetite (weight of food consumed per day) were analysed for fish fed to satiation after a 1 or 2-week period of feed deprivation. Three species were compared: two omnivores (minnow, Phoxinus phoxinus and gibel carp, Carassius auratus gibelio) and a carnivore (three-spined stickleback, Gasterosteus aculeatus). All species showed compensatory changes in appetite and growth during the re-feeding period but in the stickleback, there was a lag of a week before the compensatory response was detected. The temporal dynamics of appetite differed between the three species but not within a species. Appetite of the minnow declined towards control levels from the onset of re-feeding. In gibel carp, appetite increased to a peak and then declined to control levels. In the stickleback, appetite was initially below control levels, increased to a maximum, then declined towards control levels. The differences between the species might have been artefacts of the experimental protocols used but could also reflect underlying differences in the control of appetite in these species of fish.