Effects of purifying and adaptive selection on regional variation in human mtDNA

A phylogenetic analysis of 1125 global human mitochondrial DNA (mtDNA) sequences permitted positioning of all nucleotide substitutions according to their order of occurrence. The relative frequency and amino acid conservation of internal branch replacement mutations was found to increase from tropical Africa to temperate Europe and arctic northeastern Siberia. Particularly highly conserved amino acid substitutions were found at the roots of multiple mtDNA lineages from higher latitudes. These same lineages correlate with increased propensity for energy deficiency diseases as well as longevity. Thus, specific mtDNA replacement mutations permitted our ancestors to adapt to more northern climates, and these same variants are influencing our health today.     

Assessment of oil content and fatty acid composition variability in two economically important Hibiscus species

The Hibiscus genus encompasses more than 300 species, but kenaf (Hibiscus cannabinus L.) and roselle (Hibiscus sabdariffa L.) are the two most economically important species within the genus. Seeds from these two Hibiscus species contain a relatively high amount of oil with two unusual fatty acids: dihydrosterculic and vernolic acids. The fatty acid composition in the oil can directly affect oil quality and its utilization. However, the variability in oil content and fatty acid composition for these two species is unclear. For these two species, 329 available accessions were acquired from the USDA germplasm collection. Their oil content and fatty acid composition were determined by nuclear magnetic resonance (NMR) and gas chromatography (GC), respectively. Using NMR and GC analyses, we found that Hibiscus seeds on average contained 18% oil and seed oil was composed of six major fatty acids (each >1%) and seven minor fatty acids (each <1%). Hibiscus cannabinus seeds contained significantly higher amounts of oil (18.14%), palmitic (20.75%), oleic (28.91%), vernolic acids (VA, 4.16%), and significantly lower amounts of stearic (3.96%), linoleic (39.49%), and dihydrosterculic acids (DHSA, 1.08%) than H. sabdariffa seeds (17.35%, 18.52%, 25.16%, 3.52%, 4.31%, 44.72%, and 1.57%, respectively). For edible oils, a higher oleic/linoleic (O/L) ratio and lower level of DHSA are preferred, and for industrial oils a high level of VA is preferred. Our results indicate that seeds from H. cannabinus may be of higher quality than H. sabdariffa seeds for these reasons. Significant variability in oil content and major fatty acids was also detected within both species. The variability in oil content and fatty acid composition revealed from this study will be useful for exploring seed utilization and developing new cultivars in these Hibiscus species.     

Infiltration Rates in Reclaimed Surface Coal Mines

Reclamation of land disturbed due to mining in arid and semiarid environments occurs across the globe. Large-scale surface mines provide unique opportunities to examine the reclamation process across a landscape. The objectives of this research were to (1) measure infiltration rates in reclaimed surface coal mines and (2) determine the effects of soil properties on ground cover on infiltration rates of surface coal mines. In this study, reclaimed land 10?C15 and 20?C25?years old, and native reference site (undisturbed) were investigated at two large surface coal mines in Wyoming, USA. Infiltration rates were measured using double-ring infiltrometer method. The soil properties including bulk density, pH, carbonate content, organic carbon content, aggregate stability, electrical conductivity, and soil texture were analyzed using standard methods. The ground cover was estimated visually. Statistical analysis was conducted to determine if any correlations between infiltration rate and soil properties and ground cover exist. Results suggest that at Mine 1, infiltration rates on reclaimed land were found to be significantly higher in the 20?C25-year-old reclamation than the 10?C15-year-old reclamation and the native site. At Mine 2, the native site had significantly higher infiltration than 20?C25-year-old reclamation, which in turn had significantly higher infiltration rates than the 10?C15-year-old reclaimed site. Along with infiltration, soil characteristics were examined. Overall, the findings of this study suggest soil texture and plant cover play an important role in controlling infiltration rates in reclaimed surface coal mines.     

Larval dispersal and population connectivity among a network of marine reserves

A major challenge in marine ecology is describing patterns of larval dispersal and population connectivity, as well as their underlying processes. We used a biophysical model to simulate dispersal of eastern oyster, Crassostrea virginica, larvae and connectivity among a network of 10 no‐take reserves in a shallow, wind‐driven estuary to assess the relative importance of spawning location, spawning date, larval behavior, larval mortality, and adult reproductive output to predicted dispersal and connectivity patterns. The location (i.e., natal reserve) and date of spawning relative to physical processes, particularly frequency of wind reversals, were the dominant drivers of dispersal and connectivity patterns. To a lesser extent, larval behavior (i.e., 3D vertical advection and ontogenetic depth regulation) and mortality modified dispersal and connectivity, whereas spatiotemporal variability in adult reproductive output was of minimal importance. Over a 21‐day larval duration, mean dispersal distance of passive surface particles ranged from 5 to 40 km. Reserves were too small (1 km²) relative to mean dispersal distances to promote extensive local retention (median 2%) and spaced too far apart (typically ~50 km) to promote extensive inter‐reserve connectivity (median 2%). Limited connectivity and local retention may preclude the network from being self‐sustainable, thereby limiting its long‐term conservation and management benefits. In reserve systems characterized by limited connectivity, management efforts should focus on increasing connectivity by increasing the number or size of reserves to realize the benefits of improved adult demographics within reserves.     

How to perform combined cutting balloon and high pressure balloon valvuloplasty for dogs with subaortic stenosis

Subvalvular aortic stenosis (SAS) is one of the most common congenital cardiac malformations in dogs. Unfortunately, the long term success rate and survival data following either open heart surgery or catheter based intervention has been disappointing in dogs with severe subaortic stenosis. Medical therapy is currently the only standard recommended treatment option. A cutting balloon dilation catheter has been used successfully for resistant coronary artery and peripheral pulmonary arterial stenoses in humans. This catheter is unique in that it has the ability to cut, or score, the stenotic region prior to balloon dilatation of the stenosis. The use of cutting balloon valvuloplasty combined with high pressure valvuloplasty for dogs with severe subaortic stenosis has recently been reported to be a safe and feasible alternative therapeutic option. The following report describes this technique, outlines the materials required, and provides some ‘tips’ for successful percutaneous subaortic balloon valvuloplasty.     

Application of a Small-Scale Equipment System for Biomass Harvesting

The small-scale harvesting equipment system has been and continues to grow in use in forestry operations in some regions in the world. This harvest system can include a range of equipment types, such as feller-bunchers or chainsaws, skidders or farm tractors, and chippers. These machines are generally smaller, lower cost and less productive than larger, more advanced forestry machines. The objective of this project was to investigate the feasibility of a small scale harvesting system that would produce feedstock for a biomass power plant. The system had to be cost competitive. A boom-type feller-buncher, a small grapple skidder and a chipper were tested as a small-scale system. In this study, feller-buncher and skidder productivity was determined to be 10.5 m³ per productive machine hour, and production for the chipper was determined to be 18 m³ per productive machine hour. Production from the system did not reach the desired levels of 4 loads/day (25 m³/load); however, the system was able to produce about 3 loads/day. The results showed that the system currently could fill a roadside van for $16.90/m³, but suggested machine modifications could potentially reduce the system cost to $12.73/m³. Residual stand damage was minimal, especially on flatter ground and not operating on a slash layer. Soil disturbance from the harvesting system was predominantly undisturbed or classified as a shallow disturbance.