Using Copulas to Introduce Dependence in Dose-Response Modeling of Multiple Binary Endpoints

We propose a method for introducing dependence in the dose-response modeling of multiple dichotomous endpoints. The method uses a copula to define a joint multivariate distribution that is consistent with predetermined marginal distributions representing the individual dose-response functions for each endpoint. Use of copulas allows the marginal dose-response functions for each dose-endpoint combination to be unrestricted in form. An application of particular relevance to risk assessment is the dose-response modeling of multiple types of tumors in test animals exposed to a carcinogen, allowing for tumors at different sites in the same animal to be statistically dependent. In addition, the method can be used to address the possibility that different tissues/organs are subject to different internal doses and possibly different active moieties. These applications are illustrated with rodent cancer bioassay data from two example compounds.     

Effect of soil sealing on the microbial biomass,N transformation and related enzyme activities at various depths of soils in urban area of Beijing,China

Purpose  

Sealing of soils prevents the exchange of gas, water and nutrient between soil and other environmental compartments, and affects urban N flux, thereby resulting in certain negative impacts on soil functioning and urban environment. However, little information is available on the biogeochemical cycling and biological activities after sealing of soils in urban areas. The aim of this study was to assess the effects of soil sealing on N transformation and associated microbial properties.     

Mono- and Multielement Sorption of Trace Metals on Oxidic Industrial By-products

Assessing multielement adsorption of trace metals on materials having potential to be used as soil amendments is an essential stage for the remediation success, as soil contamination rarely occurs with a single element. This study evaluated mono-/multielement adsorption of Zn, Cu, Cd, and Pb on aluminum (AMB) and iron mining by-products (IMB, used for comparison). Prior to adsorption, these products were characterized by X-ray diffraction, isoelectric point, infrared spectroscopy, scanning electron microscopy, and microwave furnace digestion. Sorption experiments comprised: (1) pH adjustment (5.5, 6.5, and natural suspension pH), (2) mono- and multielement adsorption, and (3) desorption. Rising pH from 5.5 to natural suspension values (9.5) increased monoelement adsorption of Zn, Cu, Cd, and Pb on AMB up to 3.8-, 1.4-, 6.2-, and 1.1-fold, whereas multielement adsorption was increased up to 17.3-, 2.0-, 20.3-, and 1.2-fold, respectively. Zinc and Cd were less adsorbed than Cu and Pb and more affected by competition. Multielement adsorption at 5.5 pH in AMB resulted in smaller adsorption of Zn (up to 4.6-fold), Cu (1.4-fold), Cd (3.3-fold), and Pb (1.1-fold) when compared with monoelement adsorption. The lower the pH, the smaller the adsorption and the higher the desorption. The AMB showed higher capacity to maintain the elements adsorbed than the IMB.     

Organoclays reduce arsenic bioavailability and bioaccessibility in contaminated soils

Purpose  

Naturally occurring layer silicate clay minerals can be value added by modifying their surface properties to enhance their efficacy in the remediation of environmental contaminants. Silicate clay minerals modified by the introduction of organic molecules into the mineral structure are known as organoclays and show much promise for environmental remediation applications. The present study assesses the extent of decrease in bioavailable and bioaccessible arsenic (As) via enhanced adsorption by soil treated with organoclays.     

Interactive effects of Cd and PAHs on contaminants removal from co-contaminated soil planted with hyperaccumulator plant <Emphasis Type="Italic">Sedum alfredii</Emphasis>

Purpose  

Soil contamination by multiple organic and inorganic contaminants is common but its remediation by hyperaccumulator plants is rarely reported. The growth of a cadmium (Cd) hyperaccumulator Sedum alfredii and removal of contaminants from Cd and polycyclic aromatic hydrocarbons (PAHs) co-contaminated soil were reported in this study.     

Semiarid soils submitted to severe drought stress: influence on humic acid characteristics in organic-amended soils

Purpose  

The objective of this work was to assess the effect of severe drought conditions on the characteristics of semiarid soil humic acids (HAs) as well as the effect of organic amendment on such changes.     

Classification of Peruvian highland maize races using plant traits

The maize of Latin America, with its enormous diversity, has played an important role in the development of modern maize cultivars of the American continent. Peruvian highland maize shows a high degree of variation stemming from its history of cultivation by Andean farmers. Multivariate statistical methods for classifying accessions have become powerful tools for classifying genetic resources conservation and the formation of core subsets. This study has two objectives: (1) to use a numerical classification strategy for classifying eight Peruvian highland races of maize based on six vegetative traits evaluated in two years and (2) to compare this classification with the existing racial classification. The numerical classification maintained the main structure of the eight races, but reclassified parts of the races into new groups (Gi). The new groups are more separated and well defined with a decreasing accession within group × environment interaction. Most of the accessions from G1 are from Cusco Gigante, all of the accessions from G3 (except one) are from Confite Morocho, and all of the accessions from G7 are from Chullpi. Group G2 has four accessions from Huayleño and four accessions from Paro, whereas G4 has four accessions from Huayleño and five accessions from San Geronimo. Group G5 has accessions from four races, and G6 and G8 formed small groups with two and one accession each, respectively. These groups can be used for forming core subsets for the purpose of germplasm enhancement and assembling gene pools for further breeding.     

Soil chemical and microbiological properties in hay production systems: residual effects of contrasting N fertilization of swine lagoon effluent versus ammonium nitrate

This study characterized soil chemical and microbiological properties in hay production systems that received from 0 to 600 kg plant-available N (PAN) ha⁻¹ year⁻¹ from either swine lagoon effluent (SLE) or ammonium nitrate (AN) from 1999 to 2001. The forage systems contained plots planted with bermudagrass (Cynodon dactylon L.) or endophyte-free tall fescue (Festuca arundinaceae Schreb.). In March 2004, the plots were sampled for measurements of a suite of soil chemical and microbiological properties. Nitrogen fertilization rates were significantly correlated with soil pH and K₂SO₄-extractable soil C but not with total soil C, soil C/N ratio, electrical conductivity, or Mehlich-3-extractable nutrients. Soil supplied with SLE had significantly lower Mehlich-3-extractable nutrients than the soil supplied with AN. Two indicators of soil N-supplying capacity (potentially mineralizable N and amino sugar N) varied with plant species and the type of N fertilizer. However, they generally peaked at an application rate of 200 or 400 kg PAN ha⁻¹ year⁻¹. Soil microbial biomass C also peaked at an application rate of 200 or 400 kg PAN ha⁻¹ year⁻¹. Nitrification potential was significantly higher in soil supplied with AN than in the unfertilized control but was similar between SLE-fertilized and unfertilized soils. Our results indicated that an application rate as high as 600 kg PAN ha⁻¹ year⁻¹ did not benefit soil microbial biomass, microbial activity, and N transformation processes in these forage systems.     

The non-recoverable phosphorus following sorption onto a Brazilian Ultisol

Phosphorus (P) immobilization in soil involves geochemical (e.g., sorption, precipitation, and diffusion) and microbiological (microbial uptake) processes. Using a Brazilian Ultisol, relative contributions of both processes to the total immobilization of applied P over 14 days were investigated. The P immobilized by microbes as interpreted by microbial suppression (achieved by mercury sterilization) was 17, 50, 54, and 56% (of the total immobilized P) on days 3, 7, 10, and 14 after fertilization, respectively. In the short-term (1 to 3 days), microbes played less of a role than did the physical effect of shaking the soil, but became the major factor by days 7 to 14. Geochemical process that might be considered short-term ageing caused only 13–16% of the total immobilization in the same time period above. Calculations supported the interpretation that measurable diffusion occurred across water films on the soil particles.