Immediate Impact of the Flood (Bohemia, August 2002) on Selected Soil Characteristics

In August 2002 extreme floods affected Bohemia a part of the Czech Republic, along Vltava and Labe rivers. After the flood had culminated, soil samples of arable and meadow soil (flooded and control-non-flooded) have been collected in the surroundings of the cities of ?eské Budějovice (CB, South Bohemia, the Vltava river, the upper flood stream) and Ústí nad Labem (UL, the Labe river, the lower flood stream). Different parameters of arable soils have been affected more significantly than those of meadow soils. Soil texture e.g. has been shifted from sandy loam to loam (CB) and clay loam (UL). Organic carbon, total phosphorus and nitrogen contents have been increased as well as the content of some hazardous elements such as arsenic. A shift of soil pH from 6.1 to 4.8 has been noticed in CB and an opposite one from 5.1 to 7.1 was measured in UL. Available phosphorus decreased in CB by 56% while a four-fold increase was measured in UL. Chlorinated organic pesticides level was significantly reduced, but that of polycyclic aromatic hydrocarbons (PAH) increased up to the maximum values of legal limits. The UL arable soil also became heavily contaminated by PAH. The CB arable soil demonstrated high microbial activity, while UL arable soil suffered under stress conditions in this respect. The flooded meadow soils became covered with a layer of drifted soil sediment, which retained enhanced content of the PAH's different hazardous elements, and, in addition, the soil aeration was reduced.     

Effect of thinning on anatomical adaptations of Norway spruce needles

Conifers and other trees are constantly adapting to changes in light conditions, water/nutrient supply and temperatures by physiological and morphological modifications of their foliage. However, the relationship between physiological processes and anatomical characteristics of foliage has been little explored in trees. In this study we evaluated needle structure and function in Norway spruce families exposed to different light conditions and transpiration regimes. We compared needle characteristics of sun-exposed and shaded current-year needles in a control plot and a thinned plot with 50% reduction in stand density. Whole-tree transpiration rates remained similar across plots, but increased transpiration of lower branches after thinning implies that sun-exposed needles in the thinned plot were subjected to higher water stress than sun-exposed needles in the control plot. In general, morphological and anatomical needle parameters increased with increasing tree height and light intensity. Needle width, needle cross-section area, needle stele area and needle flatness (the ratio of needle thickness to needle width) differed most between the upper and lower canopy. The parameters that were most sensitive to the altered needle water status of the upper canopy after thinning were needle thickness, needle flatness and percentage of stele area in needle area. These results show that studies comparing needle structure or function between tree species should consider not only tree height and light gradients, but also needle water status. Unaccounted for differences in needle water status may have contributed to the variable relationship between needle structure and irradiance that has been observed among conifers.     

Optimizing phosphorus fertilization in an intensive vegetable-rice cropping system

A study was conducted in a sweet pepper-maize-rice cropping system in six farmers fields in Batac, Ilocos Norte, the Philippines, to determine the optimum P fertilizer rate for sweet pepper that will benefit the succeeding crops, maximize system-level productivity and profitability, and reduce the excessive accumulation of P in the soil. Single super phosphate was applied to sweet pepper at rates of 0, 28, 56, 84, 112, and 140 kg P ha^–1 and the succeeding crops were grown without P fertilization. Maize residue was incorporated into the soil at puddling of soil for rice. Phosphorus fertilization at 56 kg P ha^–1 and above had a residual effect on maize and rice. A reduction in the P applied to sweet pepper from 140 to 84 kg P ha^–1 reduced extractable P in the soil at rice harvest from 52 to 29 kg P ha^–1. Phosphorus applied at 111 kg P ha^–1 to sweet pepper was optimum for maximum productivity and economic returns of the sweet pepper-maize-rice cropping system. This rate of P also significantly reduced P accumulation in the soil, thereby reducing the chances of negative effects on soil nutrient balance/availability. The results suggested the need for a cropping systems approach to conserve and effectively use native and fertilizer P in the sweet pepper-rice cropping system.     

Allele mining and haplotype discovery in barley candidate genes for drought tolerance

In the present study, allele mining was conducted on a panel of drought related candidate genes in a set of 96 barley genotypes using EcoTILLING, which is a variant of the targeting induced local lesions in genomes (TILLING) technology. Analyzing approximately 1.5 million basepairs in barley a total number of 94 verified unique haplotypes were identified in 18 amplicons designed for 9 genes. Overall, 185 single nucleotide polymorphisms (SNPs) and 46 insertions/deletions (INDELs) were detected with a mean of 1SNP/92 bp and 1INDEL/372 bp genomic sequence. Based on overlapping haplotype sequences, markers were developed for four candidate genes (HvARH1, HvSRG6, HvDRF1, HVA1), which allows distinguishing between the main haplotypes showing either differences in amino acid sequence or which have larger INDELs in the promoter region. As “proof of concept”, the HvARH1 and HvSRG6 haplotypes were tested for the level of abscisic acid-induced gene expression in subsets of genotypes belonging to different haplotype categories. An integrated database was developed to contain information about the genes, genotypes, and haplotypes analyzed in this study. The database supplies profound information about the natural variation in the tested drought related candidate genes providing a significant asset for further mapping studies dealing with this highly polygenic trait.     

Vibrational energy transfer across a reverse micelle surfactant layer

In a suspension of reverse micelles, in which the surfactant sodium dioctyl sulfosuccinate (AOT) separates a water nanodroplet from a bulk nonpolar CCl4 phase, ultrafast vibrational spectroscopy was used to study vibrational energy transfer from the nanodroplet through the AOT interfacial monolayer to the surrounding CCl4. Most of the vibrational energy from the nanodroplet was transferred to the polar AOT head group within 1.8 picoseconds and then out to the CCl4 within 10 picoseconds. Vibrational energy pumped directly into the AOT tail resulted in a slower 20- to 40-picosecond transfer of energy to the CCl4.     

Structure of Nup58/45 suggests flexible nuclear pore diameter by intermolecular sliding

The nucleoporins Nup58 and Nup45 are part of the central transport channel of the nuclear pore complex, which is thought to have a flexible diameter. In the crystal structure of an alpha-helical region of mammalian Nup58/45, we identified distinct tetramers, each consisting of two antiparallel hairpin dimers. The intradimeric interface is hydrophobic, whereas dimer-dimer association occurs through large hydrophilic residues. These residues are laterally displaced in various tetramer conformations, which suggests an intermolecular sliding by 11 angstroms. We propose that circumferential sliding plays a role in adjusting the diameter of the central transport channel.     

Laboratory Measurement of Mowing Machine Material Feed Rate

The main objective of this research was to evaluate two possibilities of material feed rate measurement of modern mowing machines equipped with conditioner. The machines are commonly used for harvest of grasses (Lolium multiflorum, Dactylus glomerata, Phleum pratense, etc.), clover (Trifolium pratense, etc.), alfalfa (Medicago sativa) etc.A mowing machine with finger conditioner was equipped with an electronic measuring unit for the purpose of our measurements. The mowing machine's conditioner shaft was supplied with strain gauges placed on a torque-meter and with a RPM optical sensor counter. Together with torque-meter the mowing machine was equipped with a curved impact plate mounted on the machine's material output.It was decided to arrange a laboratory measurement to obtain information about the dependence of conditioner power input and signals from the impact plate on material mass flow. A mixture of grass and alfalfa was used for our measurement.The measurements carried out proved that a very good linear relationship existed between the conditioner's power input, output frequency of the apparatus measuring impact force by means of the impact plate, and material feed rate through the mowing machine. The calculated coefficients of correlation were about 0.95. It is possible to differentiate a material feed rate difference of 0.5kgs^–1 using both methods. This accuracy should be sufficient for practical utilisation such as creating yield maps.     

Relationships between Acid Ions and Carbonaceous Fly-Ash Particles in Deposition at European Mountain Lakes

The concentrations of major ions and spheroidal carbonaceous fly-ash particles (SCPs) in bulk deposition were determined in weekly samples from six European mountain lakes during 1997/98. SCPs are produced only from high temperature combustion of fossil-fuels and therefore provide an unambiguous indicator of atmospheric deposition from this source. Positive correlations were observed between SCPs and SO₄ ^2?, NO₃ ^? and NH₄ ⁺ at all sites except for some determinands at Jorisee (Switzerland) and Starolesnienske (Slovakia). Correlations between SCPs and SO₄ ^2? + NO₃ ^? were always more positive than for SCPs with 'total acid ions' (SO₄ ^2? + NO₃ ^? + NH₄ ⁺). This is in agreement with the expectation that the contribution to NH₄ ⁺ deposition made by fossil-fuels is negligible. Good positive correlations between SCPs and all acid anions were observed at Estany Redo (Pyrenees); lower but still positive correlations were observed for all acid ions with SCPs at Gossenköllesee (Austria), Lochnagar and Kårvatn (central Norway), whilst little trend in correlation was observed for Jorisee and Starolesnienske. It is suggested that this gradient reflects the influence of fossil-fuels on acid deposition in these areas. A high positive correlation was observed between SCP and Cl^? at Gossenkollesee possibly as a result of HCl from coal combustion.     

Analysis of Genetic Relationships among Turkish Cultivars and Breeding Lines of Lens culinatis Mestile Using RAPD Markers

Randomly Amplified Polymorphic DNA markers were used to determine the genetic relationships among Turkish lentil cultivars and breeding lines. Fourteen cultivars and thirteen breeding lines were evaluated to determine genetic variability using nine random 10-mer primers (among 45 primers). Forty-one reproducible bands were obtained, 54% of which were polymorphic. Genetic distances among cultivars and breeding lines were obtained from the simple matching coefficients (SM). The lowest genetic distance was observed between the cultivars of Ali Dayi and Kafkas with 5.0%, while ‘Seyran-96’ and ‘Ozbek’ had the highest genetic distance with 58.3%. An unweighted pair-group method with arithmetic averages (UPGMA) cluster analysis was performed on the distance matrix using Phylip software. The dendrogram clearly showed two distinct groups. The first group is composed of Akm 565 and Akm 563. The second group contains all the cultivars and remaining eleven breeding lines.