Interval sampling methods in Zagros forests using GIS

In this study, for accuracy and cost an optimal inventory method was examined and introduced to obtain information about Zagros forests, Iran. For this purpose,three distance sampling methods(compound, order distance and random-pairs) in 5 inventory networks(100 m × 100 m, 100 m × 150 m, 100 m × 200 m,150 m × 150 m, 200 m × 200 m) were implemented in GIS environment, and the related statistical analyses were carried out. Average tree density and canopy cover in hectare with 100% inventory were compared to each other.All the studied methods were implemented in 30 inventory points, and the implementation time of each was recorded.According to the results, the best inventory methods for estimating density and canopy cover were compound150 m × 150 m and 100 m × 100 m methods, respectively. The minimum amount of product inventory time per second(T), and(E%)2 square percent of inventory error of sampling for the compound 150 m × 150 m method regarding density in hectare was 691.8, and for the compound 100 m × 100 m method regarding canopy of 12,089 ha. It can be concluded that compound method is the best for estimating density and canopy features of the forests area.     

Study Potential of Indigenous <Emphasis Type="Italic">Pseudomonas aeruginosa</Emphasis> and <Emphasis Type="Italic">Bacillus subtilis</Emphasis> in Bioremediation of Diesel-Contaminated Water

Petroleum products which are used in a wide variety of industries as energy sources and raw materials have become a major concern in pollution of terrestrial and marine environments. The purpose of this study was to assess the potential of indigenous microbial isolates for degradation of diesel fuel. Two most proficient bacterial strains among five isolated strains from polluted soil of an industrial refinery were studied. The isolates then were identified as Pseudomonas aeruginosa and Bacillus subtilis using biochemical tests and 16S rRNA gene sequence analyses. P. aeruginosa showed higher biodegradation efficiency than B. subtilis in shaking flask containing diesel-contaminated water. P. aeruginosa and B. subtilis degraded about 87 and 75% of total hydrocarbons, respectively, in flasks containing 2% diesel and 98% water. The biodegradation efficiency of the isolates decreased as diesel contamination increased from 2 to 5%. The isolates showed significantly higher efficiency on degradation of short-chain hydrocarbons in 20 days, i.e., by using P. aeruginosa, removal efficiency of C₁₀ hydrocarbons was near 90%, while about 69% of C₂₀₊ hydrocarbons and 47% of aromatic hydrocarbons were removed. Therefore, the isolates showed high capability in biodegradation of diesel contamination of the refinery.     

Effects of mycorrhiza inoculation on cucumber growth irrigated with saline water

This experiment was conducted as a factorial based on complete randomized design (CRD) to study the effects of mycorrhiza inoculation density on cucumber cv. Super N3 irrigated with different salinity sodium chloride (NaCl) levels. Treatments were mycorrhiza inoculations; M1 (non mycorrhizal plant), M2 and M3 (mycorrhiza inoculations with 1000 and 2000 spores) and saline water was provided by S1, S2, S3, and S4 (control, 50, 75, and 100 mM NaCl) with 4 replications. The results showed that saline water reduced root, shoot, and fruit weights, and increased proline and electrolyte leakage. Photosynthesis rate, stomata and mesophyll conductance significantly decreased with increased NaCl concentrations. Mycorrhiza inoculation with 2000 spores increased fruit fresh and dry weights, proline and electrolyte leakage, and both mycorrhiza inoculations increased root and shoot dry weights, photosynthesis and stomata conductance. Root volume increased by mycorrhiza inoculation with 2000 spores under non-stress condition, and root length was stimulated by both mycorrhiza inoculations at all saline water levels. Fruit fresh and dry weights were enhanced by mycorrhiza inoculation with 1000 spores at all saline water levels. Photosynthesis rate was reduced by saline water stress and mycorrhiza inoculation stimulated photosynthesis rate. Mycorrhiza inoculation with 2000 spores increased transpiration under saline and non-saline conditions. Proline content of cucumber leaves increased under saline water application. Electrolyte leakage increased by saline water and mycorrhiza inoculation could not improve it. Both mycorrhiza inoculations (1000 and 2000 spores) at all salinity levels, and mycorrhiza inoculation with 1000 spores at 100 mM NaCl enhanced fruit weight, photosynthesis, and proline content of the cucumber leaves.     

Chemical composition of oleo-gum-resin from Ferula gummosa

The chemical composition of oleo-gum-resin from Ferula gummosa collected in the northern part of Iran has been studied. The fraction of oleo-gum-resin soluble in ethanol (ca 67 wt.%) is composed by three major fractions: (i) monoterpenes and monoterpenoids (ca 15 wt.% fraction), (ii) sesquiterpenes and sesquiterpenoids (ca 30 wt.%) and (iii) triterpenes and triterpenoids (ca 55 wt.%). The major families of terpenes and terpenoids were identified employing gas chromatography coupled with mass spectrometry detector (GC-MS). Almost 25 wt.% of oleo-gum-resin was insoluble in ethanol and, according to wet chemistry analyses, assigned to arabinogalactane structurally associated with protein complex (AGP). This arabinogalactan possessed the molecular weight of ca 30 kDa, as revealed by size exclusion chromatography, and the main backbone was constituted by β-(1 → 3)/β-(1 → 3,6)-linked d-galactopyranosyl residues ramified predominantly by terminal α-l-arabinofuranosyl and β-d-glucuronopyranosyl residues, as assessed by 1D/2D ¹H NMR.     

Investigation of physico-chemical properties and antioxidant activity of twenty Iranian pomegranate (Punica granatum L.) cultivars

Pomegranate is one of the native fruits of Iran which contains high genetic resources, but there are insufficient information regarding properties of the fruit. The objective of the present study was to investigate the physcio-chemical characteristics and antioxidant activity of twenty pomegranate cultivars grown in Iran. This study showed that there were significant differences among the cultivars in all measured factors except the length/diameter ratio of fruit. The fruit weight, skin percentage, aril percentage and juice percentage were within the range of 196.89–315.28 g, 32.28–59.82%, 37.59–65% and 26.95–46.55%, respectively. The total soluble solids content varied from 11.37 (°Brix) to 15.07 (°Brix), pH values from 3.16 to 4.09, titratable acidity content from 0.33 g 100 g⁻¹ to 2.44 g 100 g⁻¹ and total sugars content from 13.23 g 100 g⁻¹ to 21.72 g 100 g⁻¹. The results also showed that the values of ascorbic acid ranged from 9.91 mg 100 g⁻¹ to 20.92 mg 100 g⁻¹. The total anthocyanins content was observed in pomegranate cultivars between 5.56  mg 100 g⁻¹ and 30.11 mg 100 g⁻¹. The level of total phenolics was varied from 295.79 mg 100 g⁻¹ to 985.37 mg 100 g⁻¹. The antioxidant activity of pomegranate cultivars was found between 15.59 and 40.72%. These data demonstrated that the cultivar was the main parameter which influences the physico-chemical properties and antioxidant activity in pomegranates.     

Transplanting P75-Suppressed Bone Marrow Stromal Cells Promotes Functional Behavior in a Rat Model of Spinal Cord Injury

Background: Bone marrow stromal cells (BMSC) have been successfully employed for movement deficit recovery in spinal cord injury (SCI) rat models. One of the unsettled problems in cell transplantation is the relative high proportion of cell death, specifically after neural differentiation. According to our previous studies, p75 receptor, known as the death receptor, is only expressed in BMSC in a time window of 6-12 hours following neural induction. Moreover, we have recently reported a decreased level of apoptosis in p75-suppressed BMSC in vitro. Therefore, our objective in this research was to explore the functional effects of transplanting p75:siRNA expressing BMSC in SCI rats. Methods: Laminectomy was performed at L1 vertebra level to expose spinal cord for contusion using weight-drop method. PBS-treated SCI rats (group one) were used as negative controls, in which cavitations were observed 10 weeks after SCI. pRNA-U6.1/Hygro- (group two, as a mock) and pRNA-U6.1/Hygro-p75 shRNA- (group three) transfected BMSC were labeled with a fluorescent dye, CM-DiI, and grafted into the lesion site 7 days after surgery. The Basso-Beattie-Bresnehan locomotor rating scale was performed weekly for 10 weeks. Results: There was a significant difference (P≤0.05) between all groups of treated rats regarding functional recovery. Specifically, the discrepancy among p75 siRNA and mock-transfected BMSC was statistically significant. P75 siRNA BMSC also revealed a higher level of in vivo survival compared to the mock BMSC. Conclusion: Our data suggest that genetically modified BMSC that express p75:siRNA could be a more suitable source of cells for treatment of SCI. Key Words: Spinal cord injury (SCI), Apoptosis, Bone marrow stromal cells (BMSC)     

Molecular characterization of a Squalene epoxidase gene in dermatophyte pathogen Trichophyton tonsurans

BACKGROUND: Trichophyton tonsurans is one of the dermatophyte fungi which invades the skin and hair of human. Several properties of this fungus have been investigated so far. However a few studies were carried out in the field of molecular biology of this fungus. In the present study, we tried to identify the Squalene epoxidase gene which is related to synthesis of ergosterol in this fungus. METHODS: Pairs of 23 and 24 nucleotides primers were designed from highly conserved regions of the similar genes in other fungi. Mentioned primers were utilized in PCR by using isolated genomic DNA of T. tonsurans whereas the PCR fragments were then sequenced. RESULTS AND CONCLUSION: Nucleotides (n = 558) have been sequenced from this new gene which encodes a polypeptide with 186 amino acids. Sequences comparison in gene data banks (NCBI, NIH) for this part of DNA and its deduced amino acid revealed significant homology with members of the eukaryotic Squalene epoxidase.     

Association Study of rs1333040 and rs1004638 Polymorphisms in the 9p21 Locus with Coronary Artery Disease in Southwest of Iran

Background:

Coronary artery disease (CAD) is a multifactorial and heterogenic disease. Recently, genome-wide association studies have reported that rs1333040 (C/T) and rs1004638 (A/T) single nucleotide polymorphisms (SNPs) in the 9p21 locus have very strong association with CAD. This study aimed to examine these associations in Southwest of Iran.

Methods:

Blood samples were collected from 200 CAD patients and 110 healthy individuals with no CAD. The association of two SNPs with CAD was evaluated by PCR and restriction fragment length polymorphism.

Results:

Chi-square test showed no association between rs1333040 SNP and CAD (X²: 4.66, df: 2, P=0.09). Also, there was no association between rs1004638 SNP and CAD (X²: 0.27, df: 2, P=0.88).

Conclusion:

No association was observed between rs1333040 and rs1004638 SNPs in the 9P21 region and CAD in Southwest of Iran. Key Words: Coronary artery disease, Single nucleotide polymorphisms, Genetic association study, Iran     

Inducing salt tolerance in strawberry (Fragaria × ananassa Duch) plants by acetate application

Abstract

Acetate, can be considered as an appropriate interface for increasing tolerance to salinity stress in strawberries. Strawberry plants were exposed to different treatments including control (Hoagland solution), salinity (40?mM NaCl), acetic acid (AA) (1?mM), acetic acid (1?mM) + salinity (AAS), ammonium acetate (AA) (1?mM), ammonium acetate (AM) (1?mM) + salinity (AMS), ammonium carbonate (AC) (0.5?mM), and ammonium carbonate (0.5?mM) + salinity (ACS) and put them in hydroponic system. The results indicated that salinity reduced shoot dry weight about 80.12% when compared with untreated control plants. That in comparison to acetate treatments, this reduction was 47.13 and 48.77% in AAS and AMS, respectively. Leaf area was decrease 59% in salinity treatment but this reduction was 14% in AAS. The AAS and AMS were most effective in increasing fruit yields (35.93 and 52.16?g per plant, respectively) in comparison to salinity treatment alone (27.23?g per plant) condition. In saline conditions, the highest amount of soluble carbohydrate was observed in AMS treatment (9.67?mg g^?1 DW) that there was no significant difference with AAS treatment. Increase in Na⁺ and Cl^? accumulation in shoots and decreased in K⁺ in saline condition were observed. The highest amount of potassium was observed in acetate treatments. The present results have demonstrated that acetate could improve tolerance to the salinity, yield and plants growth in strawberry. But, in comparison to AA and AM treatments, better results were observed in AA treatment in both salinity and non-salinity conditions.     

The effect of different biochars on the growth and water use efficiency of fenugreek (Trigonella foenum-graecum L.)

In two identical pot trials, we investigated the effect of different biochars on the growth and water use efficiency (WUE) of fenugreek (Trigonella foenum-graecum L.) grown with and without water stress. Plants were grown in pots with and without biochar. Rice husk (RH), standard rice husk (SRH), standard wheat straw (SWS) or standard oilseed rape straw (SOS) biochars were added at a rate of 2% by weight. Irrigation was reduced from 80% of field capacity to 40% in half of the pots to create water stress when 50% of the plants flowered. No significant interaction was observed between irrigation and biochar treatments. Water stress resulted in smaller plants (11.5%), fewer pods (16.1%) and reduced 100-seed weight (12.6%), seed yield (20.1%) and plant dry weight (55.0%). All standard biochars increased plant dry weight in a range of 18%−25% compared with the controls. There was no significant effect of biochar on the number of pods and seed weight. Only RH, SWS and SOS biochar increased the number of seeds pod⁻¹ by 9.0%−14.5% compared with the controls regardless of water stress. RH and SOS biochars increased seed yield by 16.7 and 21.6%, respectively. RH, SWS and SOS biochar increased the WUE by 17.3%, 10.1% and 16.2% regardless of water stress, respectively. Based on the experiment, we recommend farmers to add biochar whatever type they have available. However, RH and SOS seem to be better than the others are, as they seem to be able to increase seed yield and WUE considerably.