Photoassimilate allocation and dynamics of hotspots in roots visualized by 14C phosphor imaging

Understanding photoassimilate allocation into the roots and the release of organic substances from the roots into the rhizosphere is an important prerequisite for characterizing the belowground C input, the spatial and temporal distribution of C, and the interactions between plants and soil microorganisms. Based on ¹⁴C phosphor imaging, we visualized the allocation of assimilates into Lolium perenne roots and estimated the life time of hotspots at the root tips. Lolium shoots were labeled in a ¹⁴CO₂ atmosphere, and herbariums of roots and shoots were prepared 6 h, 2 d, and 11 d after the ¹⁴C pulse. The ¹⁴C distribution in roots and leaves revealed that pulse labeling does not yield homogeneously labeled plant material. The spatial distribution of assimilate allocation was evaluated based on the ¹⁴C specific activity expressed as digital light units (DLU mm^–2) of the imaging plates. Areas with high relative ¹⁴C activity were classified as hotspots. Strong ¹⁴C hotspots were detected mainly at the root tips already 6 h after the ¹⁴C assimilation, and they remained active for at least 2 d. Eleven days after the ¹⁴C assimilation, the hotspots at the root tips disappeared and the ¹⁴C distribution was much more even than after 6 h or after 2 d. ¹⁴C phosphor imaging proved to be a promising tool to visualize the allocation of photoassimilates into the roots and the rhizosphere and can be used to identify hotspots and their dynamics.     

Land Use and Precipitation Affect Organic and Microbial Carbon Stocks and the Specific Metabolic Quotient in Soils of Eleven Ecosystems of Mt. Kilimanjaro,Tanzania

Tropical ecosystems are under increasing pressure of land‐use changes, strongly affecting the carbon cycle. Conversion from natural to agri‐cultural ecosystems is often accompanied by a decrease in the stocks of organic and microbial carbon (C_org, C_mic) as well as changes in microbial activity and litter decomposition. Eleven ecosystems along an elevation gradient on the slopes of Mt. Kilimanjaro were used to investigate impacts of land‐use changes on C_org and C_mic stocks as well as the specific metabolic respiration quotient (q_sCO₂) in surface soils. Six natural, two semi‐natural and three intensively used agricultural ecosystems were investigated on an elevation gradient from 950 to 3,880 m asl. To estimate the effects of precipitation, rainfall regimes of 3·6 and 20·0 mm were simulated. C_org stocks were controlled by water availability, temperature and net primary production. Agricultural management resulted in decreases of C_org and C_mic stocks by 38% and 76%, respectively. In addition, agricultural systems were characterized by low C_mic:C_org ratios, indicating a decline in available substrate. Enhanced land‐use intensity leads to increased q_sCO₂ (agricultural > semi‐natural > natural). The traditional homegardens stood out as a sustainable land‐use form with high substrate availability and microbial efficiency. Soil CO₂ efflux and q_sCO2 generally increased with precipitation level. We conclude that soils of Mt. Kilimanjaro's ecosystems are highly sensitive to land‐use changes and are vulnerable to changes in precipitation, especially at low elevations. Even though q_sCO₂ was measured under different water contents, it can be used as an indicator of ecosystem disturbances caused by land‐use and management practices. Copyright © 2015 John Wiley & Sons, Ltd.     

Sources and mechanisms of priming effect induced in two grassland soils amended with slurry and sugar

The mechanisms and specific sources of priming effects, i.e. short term changes of soil organic matter (SOM) decomposition after substance addition, are still not fully understood. These uncertainties are partly method related, i.e. until now only two C sources in released CO₂ could be identified. We used a novel approach separating three carbon (C) sources in CO₂ efflux from soil. The approach is based on combination of different substances originated from C₃ or C₄ plants in different treatments and identical transformation of substances like C₃ sugar (from sugar beet) and C₄ sugar (from sugar cane). We investigated the influence of the addition of two substances having different microbial utilizability, i.e. slurry and sugar on the SOM or/and slurry decomposition in two grassland soils with different levels of C_org (2.3 vs. 5.1% C). Application of slurry to the soil slightly accelerated the SOM decomposition. Addition of sugar lead to changes of SOM and slurry decomposition clearly characterized by two phases: immediately after sugar addition, the microorganisms switched from the decomposition of hardly utilizable SOM to the decomposition of easily utilizable sugar. This first phase was very short (2-3 days), hence was frequently missed in other experiments. The second phase showed a slightly increased slurry and SOM decomposition (compared to the soil without sugar). The separation of three sources in CO₂ efflux from grassland soils allowed us to conclude that the C will be utilized according to its utilizability: sugar>slurry>SOM. Additionally, decomposition of more inert C (here SOM) during the period of intensive sugar decomposition was strongly reduced (negative priming effect). We conclude that, priming effects involve a chain of mechanisms: (i) preferential substrate utilization, (ii) activation of microbial biomass by easily utilizable substrate (iii) subsequent increased utilization of following substrates according to their utilizability, and (iv) decline to initial state.     

Signatures of electron fractionalization in ultraquantum bismuth

Because of the long Fermi wavelength of itinerant electrons, the quantum limit of elemental bismuth (unlike most metals) can be attained with a moderate magnetic field. The quantized orbits of electrons shrink with increasing magnetic field. Beyond the quantum limit, the circumference of these orbits becomes shorter than the Fermi wavelength. We studied transport coefficients of a single crystal of bismuth up to 33 tesla, which is deep in this ultraquantum limit. The Nernst coefficient presents three unexpected maxima that are concomitant with quasi-plateaus in the Hall coefficient. The results suggest that this bulk element may host an exotic quantum fluid reminiscent of the one associated with the fractional quantum Hall effect and raise the issue of electron fractionalization in a three-dimensional metal.     

C and N in soil organic matter density fractions under elevated atmospheric CO2: Turnover vs. stabilization

Turnover of C and N in an arable soil under Free Air Carbon Dioxide (FACE) experiment was studied by the use of ¹³C natural abundance and ¹⁵N-labeled fertilizers. Wheat was kept four growing seasons under ambient and elevated CO₂ concentrations and fertilized for three growing seasons. Density fractionation of soil organic matter (SOM) allowed to track ¹³C and ¹⁵N in free particulate organic matter (fPOM; <1.6 g cm⁻³), particulate organic matter occluded within aggregates with two densities (oPOM 1.6, oPOM 1.6-2.0 g cm⁻³), and in mineral-associated organic matter (>2.0 g cm⁻³) fractions. Elevated CO₂ and N fertilization did not significantly affect C and N contents in the bulk soil. Calculated mean residence time (MRT) of C and N revealed the qualitative differences of SOM density fractions: (i) the shortest MRT_C and MRT_N in fPOM confirmed high availability of this fraction to decomposition. Larger C/N ratio of fPOM under elevated vs. ambient CO₂ indicated an increasing recalcitrance of FACE-derived plant residues. (ii) There was no difference in MRT of C and N between lighter and heavier oPOMs probably due to short turnover time of soil aggregates which led to oPOM mixing. The increase of MRT_C and MRT_N in both oPOMs during the experiment confirmed the progressive degradation of organic material within aggregates. (iii) Constant turnover rates of C in the mineral fraction neither confirmed nor rejected the assumed stabilization of SOM to take place in the mineral fraction. Moreover, a trend of decreasing of C and N amounts in the Min fraction throughout the experiment was especially pronounced for C under elevated CO₂. Hence, along with the progressive increase of C_FACE in the Min fraction the overall losses of C under elevated CO₂ may occur at the expense of older “pre-FACE” C.     

Silicon uptake by wheat: Effects of Si pools and pH

Silicon (Si), although not considered essential, has beneficial effects on plant growth which are mostly associated with the ability to accumulate amorphous (phytogenic) Si, e.g., as phytoliths. Phytogenic Si is the most active Si pool in the soil–plant system because of its great surface‐to‐volume ratio, amorphous structure, and high water solubility. Despite the high abundance of Si in terrestrial biogeosystems and its importance, e.g., for the global C cycle, little is known about Si fluxes between soil and plants and Si pools used by plants. This study aims at elucidating the contribution of various soil Si pools to Si uptake by wheat. As pH affects dissolution of Si pools and Si uptake by plants, the effect of pH (4.5 and 7) was evaluated. Wheat was grown on Si‐free pellets mixed with one of the following Si pools: quartz sand (crystalline), anorthite powder (crystalline), or silica gel (amorphous). Silicon content was measured in aboveground biomass, roots, and soil solution 4 times in intervals of 7 d. At pH 4.5, plants grew best on anorthite, but pH did not significantly affect Si‐uptake rates. Total Si contents in plant biomass were significantly higher in the silica‐gel treatment compared to all other treatments, with up to 26 mg g^–1 in aboveground biomass and up to 17 mg g^–1 in roots. Thus, Si uptake depends on the conversion of Si into plant‐available silicic acid. This conversion occurs too slowly for crystalline Si phases, therefore Si uptake from treatments with quartz sand and anorthite did not differ from the control. For plants grown on silica gel, real Si‐uptake rates were higher than the theoretical value calculated based on water transpiration. This implies that Si uptake by wheat is driven not only by passive water flux but also by active transporters, depending on Si concentration in the aqueous phase, thus on type of Si pool. These results show that Si uptake by plants as well as plant growth are significantly affected by the type of Si pool and factors controlling its solubility.     

Substrate quality affects microbial‐ and enzyme activities in rooted soil

The rhizosphere reflects a sphere of high substrate input by means of rhizodeposits. Active microorganisms and extracellular enzymes are known to be responsible for substrate utilization in soil, especially in rooted soil. We tested for microbial‐ and enzyme activities in arable soil, in order to investigate the effects of continuous input of easily available organics (e.g., root‐exudates) to the microbial community. In a field experiment with maize, rooted and root‐free soil were analyzed and rhizosphere processes were linked to microbial activity indicators such as specific microbial growth rates and kinetics of six hydrolytic extracellular enzymes: β‐glucosidase, β‐cellobiohydrolase, β‐xylosidase, acid phosphatase, leucine‐ and tyrosine‐aminopeptidase. Higher potential activities of leucine‐aminopeptidase (2‐fold) for rooted vs. root‐free soil suggested increased costs of enzyme production, which retarded the specific microbial growth rates. Total microbial biomass determined by the substrate‐induced respiration technique and dsDNA extraction method was 23% and 42% higher in the rooted surface‐layer (0–10 cm) compared to the root‐free soil, respectively. For the rooted soil, potential enzyme activities of β‐glucosidase were reduced by 23% and acid phosphatase by 25%, and increased by 300% for β‐cellobiohydrolase at 10–20 cm depth compared to the surface‐layer. The actively growing microbial biomass increased by the 17‐fold in rooted soil in the 10–20 cm layer compared to the upper 10 cm. Despite the specific microbial growth rates showing no changes in the presence of roots, these rates decreased by 42% at 10–20 cm depth compared to the surface‐layer. This suggests the dominance in abundances of highly active but slower growing microbes with depth, reflecting also their slower turnover. Shifts in microbial growth strategy, upregulation of enzyme production and increased microbial respiration indicate strong root effects in maize planted soil.     

Responses of Soil Enzyme Activities and Microbial Community Composition to Moisture Regimes in Paddy Soils Under Long-Term Fertilization Practices

The effects of fertilization on activity and composition of soil microbial community depend on nutrient and water availability;however,the combination of these factors on the response of microorganisms was seldom studied.This study investigated the responses of soil microbial community and enzyme activities to changes in moisture along a gradient of soil fertility formed within a long-term(24 years)field experiment.Soils(0–20 cm)were sampled from the plots under four fertilizer treatments:i)unfertilized control(CK),ii)organic manure(M),iii)nitrogen,phosphorus,and potassium fertilizers(NPK),and iv)NPK plus M(NPK+M).The soils were incubated at three moisture levels:constant submergence,five submerging-draining cycles(S-D cycles),and constant moisture content at 40%water-holding capacity(low moisture).Compared with CK,fertilization increased soil organic carbon(SOC) by 30.1%–36.3%,total N by 27.3%–38.4%,available N by 35.9%–56.4%,available P by 61.4%–440.9%,and total P by 28.6%–102.9%.Soil fertility buffered the negative effects of moisture on enzyme activities and microbial community composition.Enzyme activities decreased in response to submergence and S-D cycles versus low moisture.Compared with low moisture,S-D cycles increased total phospholipid fatty acids(PLFAs)and actinomycete,fungal,and bacterial PLFAs.The increased level of PLFAs in the unfertilized soil after five S-D cycles was greater than that in the fertilized soil.Variations in soil microbial properties responding to moisture separated CK from the long-term fertilization treatments.The coefficients of variation of microbial properties were negatively correlated with SOC,total P,and available N.Soils with higher fertility maintained the original microbial properties more stable in response to changes in moisture compared to low-fertility soil.     

Biopore history determines the microbial community composition in subsoil hotspots

Biopores are hotspots of nutrient mobilisation and shortcuts for carbon (C) into subsoils. C processing relies on microbial community composition, which remains unexplored in subsoil biopores. Phospholipid fatty acids (PLFAs; markers for living microbial groups) and amino sugars (microbial necromass markers) were extracted from two subsoil depths (45–75 cm ; 75–105 cm) and three biopore types: (I) drilosphere of Lumbricus terrestris L., (II) 2-year-old root biopores and (III) 1.5-year-old root biopores plus six 6 months of L. terrestris activities. Biopore C contents were at least 2.5 times higher than in bulk soil, causing 26–35 times higher Σ PLFAs g^-1 soil. The highest Σ PLFAs were found in both earthworm biopore types; thus, the highest soil organic matter and nutrient turnover were assumed. Σ PLFAs was 33% lower in root pores than in earthworm pores. The treatment affected the microbial community composition more strongly than soil depth, hinting to similar C quality in biopores: Gram-positives including actinobacteria were more abundant in root pores than in earthworm pores, probably due to lower C bioavailability in the former. Both earthworm pore types featured fresh litter input, promoting growth of Gram-negatives and fungi. Earthworms in root pores shifted the composition of the microbial community heavily and turned root pores into earthworm pores within 6 months. Only recent communities were affected and they reflect a strong heterogeneity of microbial activity and functions in subsoil hotspots, whereas biopore-specific necromass accumulation from different microbial groups was absent.