Granulomatous lesions in lymph nodes of slaughter pigs bacteriologically negative for Mycobacterium avium subsp. avium and positive for Rhodococcus equi

The prevalence of granulomatous lesions in lymph nodes of pigs was studied. From January till August 2004 in two slaughterhouses in The Netherlands 2,116,536 pigs were examined for the presence of granulomatous lesions in the sub-maxillary lymph nodes. In 15,900 (0.75%) of these pigs, lesions could be detected. Nine farms with the highest incidence of lesions were selected for a more detailed pathological and bacteriological examination. On these farms, the prevalence of lesions in sub-maxillary lymph nodes ranged from 2.3 to 5.7% with a mean of 3.0%. From 1276 pigs that were sampled, 98 (7.7%) displayed granulomatous lesions in the sub-maxillary lymph nodes and one (0.1%) pig showed lesions in its mesenteric lymph node. Mycobacterium avium subsp. avium (MAA) could not be isolated from the lymph nodes of the 99 pigs with lesions and from a selection of lymph nodes (n = 61) of pigs without lesions. Rhodococcus equi was isolated from 44 out of 98 (44.9%) of the sub-maxillary lymph nodes with granulomatous lesions and from two mesenteric lymph nodes without lesions. A comparison of former studies and the current results indicate that the prevalence of MAA infections in slaughter pigs has strongly decreased over the last decade, whereas R. equi is highly prevalent. The high incidence of granulomatous lesions associated with the bacteriological presence of R. equi could be considered as a serious cause of misdiagnosis of MAA infections in cases where meat inspection is carried out by inspection for granulomatous changes of lymph nodes only.     

SUSTAINABLE NITROGEN MANAGEMENT INDEX: DEFINITION,GLOBAL ASSESSMENT AND POTENTIAL IMPROVEMENTS

● A composite N management index is proposed to measure agriculture sustainability. ● Nitrogen management has been moving towards sustainability targets globally. ● The improvement was achieved mainly by yield increase, while Nitrogen Use Efficiency (NUE) stagnated. ● No country achieved both yield and NUE targets and spatial variation is large. ● Region-specific yield targets can be used to supplement the standard Sustainable Nitrogen Management Index (SNMI). To represent the sustainability of nitrogen management in the Sustainable Development Goals indicator framework, this paper proposes a sustainable nitrogen management index (SNMI). This index combines the performance in N crop yield and N use efficiency (NUE), thereby accounting for the need for both food production and environmental protection. Applying SNMI to countries around the world, the results showed improvement in the overall sustainability of crop N management over the past four decades, but this improvement has been mainly achieved by crop yield increase, while global NUE has improved only slightly. SNMI values vary largely among countries, and this variation has increased since the 1970s, implying different levels of success, even failure, in improving N management for countries around the world. In the standard SNMI assessment, the reference NUE was defined as 1.0 (considered an ideal NUE) and the reference yield was defined as 90 kg·ha⁻¹·yr⁻¹ N (considering a globally averaged yield target for meeting food demand in 2050). A sensitivity test that replaced the reference NUE of 1.0 with more realistic NUE targets of 0.8 or 0.9 showed overall reduction in SNMI values (i.e., improved performance), but little change in the ranking among countries. In another test that replaced the universal reference yield with region-specific attainable yield, SNMI values declined (i.e., improved performance) for most countries in Africa and West Asia, whereas they increased for many countries in Europe and South America. The index can be improved by further investigation of approaches for setting region-specific yield targets and high-quality data on crop yield potentials. Overall, SNMI offers promise for a simple and transparent approach to assess progress of countries toward sustainable N management with a single indicator.     

Hydrostatic pressure and temperature dependence of wood moisture sorption isotherms

By expressing wood moisture content data as a function of adsorption energy, an interesting scaling capability is obtained, wherefrom the general hydrostatic pressure and temperature dependence of wood moisture content is determined. The scaling law is fully consistent with the thermodynamics of swelling. It can be used to transform room condition sorption isotherms to other temperatures and hydrostatic pressures, provided that the wood matrix is not irreversibly modified. A special procedure is suggested for the case of an irreversibly changing wood matrix, as in thermal modification and thermo-hydro-mechanical treatments. Using the present scaling theory, several fundamental aspects of wood moisture sorption are explained, such as the absence of a significant quantity of strongly bound wood moisture, the internal stress generation by sorption hysteresis in the wood cell wall, and the reason for the reversible disappearance of the sigmoid shape of the sorption isotherm at higher temperature. The results of this research may be useful (a) for transformation of known sorption data to other conditions, notably where in situ moisture measurements are difficult to perform and (b) to quantify the effects of internal stresses in the ultrastructure of the cell wall on moisture content.     

Effects of flow variation on channel and floodplain biota and habitats of the Sacramento River,California, USA

• 1. Despite progress in the development of conceptual models of river processes, the validation and application of these models to conservation may be limited by a deficit of tools for intermediate‐scale (1–100km) reaches. A model was developed to examine the effect of variation in flow on the responses of two trophic levels in a large temperate river (Sacramento River) and its seasonal floodplain (Yolo Bypass). Field data and hydrologic simulations were evaluated for three hydrologically diverse years.
• 2. The simulations showed much more hydrologic variability in the floodplain than the river, with greater total surface and shallow area, longer hydraulic residence times, and lower water velocities for the floodplain.
• 3. Chlorophyll a levels were significantly higher in the floodplain than in the river, and were negatively associated with flow. These results were consistent with longer hydraulic residence times, increased surface area of shallow water, and warmer water temperatures.
• 4. Copepods and cladoceran densities were similar in the river and its floodplain, and were mostly negatively associated with flow.
• 5. There were significantly higher densities of Diptera and terrestrial invertebrates in the floodplain than the river. Diptera densities in the floodplain were positively associated with flow.
• 6. These results provide evidence of the incremental value of floodplain habitat to the conservation of large rivers. In particular, it appears that providing river–floodplain connectivity can enhance production of lower trophic levels at relatively rapid time scales, probably benefitting secondary consumers, including Chinook salmon (Onchyrhynchus tshawytscha).

Copyright © 2004 John Wiley & Sons, Ltd.     

Development and use of a polarized equine upper respiratory tract mucosal explant system to study the early phase of pathogenesis of a European strain of equine arteritis virus

The upper respiratory tract mucosa represents the first line of defense, which has to be overcome by pathogens before invading the host. Considering the economic and ethical aspects involved in using experimental animals for pathogenesis studies, respiratory mucosal explants, in which the tissue’s three-dimensional architecture is preserved, may be ideal alternatives. Different respiratory mucosal explant cultures have been developed. However, none of them could be inoculated with pathogens solely at the epithelium side. In the present study, equine nasal and nasopharyngeal explants were embedded in agarose (3%), leaving the epithelium side exposed to allow apical inoculation. Morphometric analysis did not show degenerative changes during 72 h of cultivation. The number of apoptotic cells in the mucosa slightly increased over time. After validation, the system was used for apical infection with a European strain (08P178) of equine arteritis virus (EAV) (10^7.6TCID₅₀/mL per explant). Impermeability of agarose to virus particles was demonstrated by the absence of labeled microspheres (40nm) and a lack of EAV-antigens in RK13 cells seeded underneath the agarose layer in which inoculated explants were embedded. At 72 hpi, 27% of the EAV-positive cells were CD172a⁺ and 19% were CD3⁺ in nasal explants and 45% of the EAV-positive cells were CD172a⁺ and 15% were CD3⁺ in nasopharyngeal explants. Only a small percentage of EAV-positive cells were IgM⁺. This study validates the usefulness of a polarized mucosal explant system and shows that CD172a⁺ myeloid cells and CD3⁺ T lymphocytes represent important EAV-target cells in the respiratory mucosa.     

Distributions of microbial activities in deep subseafloor sediments

Diverse microbial communities and numerous energy-yielding activities occur in deeply buried sediments of the eastern Pacific Ocean. Distributions of metabolic activities often deviate from the standard model. Rates of activities, cell concentrations, and populations of cultured bacteria vary consistently from one subseafloor environment to another. Net rates of major activities principally rely on electron acceptors and electron donors from the photosynthetic surface world. At open-ocean sites, nitrate and oxygen are supplied to the deepest sedimentary communities through the underlying basaltic aquifer. In turn, these sedimentary communities may supply dissolved electron donors and nutrients to the underlying crustal biosphere.     

The structure of a human p110alpha/p85alpha complex elucidates the effects of oncogenic PI3Kalpha mutations

PIK3CA, one of the two most frequently mutated oncogenes in human tumors, codes for p110alpha, the catalytic subunit of a phosphatidylinositol 3-kinase, isoform alpha (PI3Kalpha, p110alpha/p85). Here, we report a 3.0 angstrom resolution structure of a complex between p110alpha and a polypeptide containing the p110alpha-binding domains of p85alpha, a protein required for its enzymatic activity. The structure shows that many of the mutations occur at residues lying at the interfaces between p110alpha and p85alpha or between the kinase domain of p110alpha and other domains within the catalytic subunit. Disruptions of these interactions are likely to affect the regulation of kinase activity by p85 or the catalytic activity of the enzyme, respectively. In addition to providing new insights about the structure of PI3Kalpha, these results suggest specific mechanisms for the effect of oncogenic mutations in p110alpha and p85alpha.