Direct atom-resolved imaging of oxides and their grain boundaries

Using high-resolution transmission electron microscopy, we obtained structure images of strontium titanate (SrTiO3) with a clearly resolved oxygen sublattice along different crystallographic directions in the bulklattice and for a Sigma3 tilt grain boundary. Comparison with image simulations showed that the grain boundary contains oxygen vacancies. Measurements of atom displacements near the grain boundary revealed close correspondence with theoretical calculations.     

Protein synthesis upon acute nutrient restriction relies on proteasome function

The mechanisms that protect mammalian cells against amino acid deprivation are only partially understood. We found that during an acute decrease in external amino acid supply, before up-regulation of the autophagosomal-lysosomal pathway, efficient translation was ensured by proteasomal protein degradation. Amino acids for the synthesis of new proteins were supplied by the degradation of preexisting proteins, whereas nascent and newly formed polypeptides remained largely protected from proteolysis. Proteasome inhibition during nutrient deprivation caused rapid amino acid depletion and marked impairment of translation. Thus, the proteasome plays a crucial role in cell survival after acute disruption of amino acid supply.     

Chromosomal effects of rapid gene evolution in Drosophila melanogaster

Rapid adaptive fixation of a new favorable mutation is expected to affect neighboring genes along the chromosome. Evolutionary theory predicts that the chromosomal region would show a reduced level of genetic variation and an excess of rare alleles. We have confirmed these predictions in a region of the X chromosome of Drosophila melanogaster that contains a newly evolved gene for a component of the sperm axoneme. In D. simulans, where the novel gene does not exist, the pattern of genetic variation is consistent with selection against recurrent deleterious mutations. These findings imply that the pattern of genetic variation along a chromosome may be useful for inferring its evolutionary history and for revealing regions in which recent adaptive fixations have taken place.     

Goiter with vascular anomalies in a litter of Polish Lowland sheepdogs

At approximately 4-5 mo of age, three Polish Lowland sheepdog puppies from a single litter of eight puppies presented to their respective primary veterinarians with bilateral subcutaneous masses in their ventral cervical regions. Evaluation, including thyroid function testing, surgical exploration with resection, computed tomography, and angiography, identified the masses as enlarged thyroid glands with severely dilated and abnormal vasculature in the regions of the glands. The dogs were also found to have serum concentrations of thyroid hormones that were below the reference ranges. None of the three dogs showed clinical signs of hypothyroidism, except for the presence of goiter. One dog also had a patent ductus arteriosus that was surgically repaired. All dogs were clinically normal at 2 yr of age. This is the first report of major vascular anomalies associated with goiter in any species. The mechanism is unknown.     

Mating patterns and pollen dispersal in four contrasting wild cherry populations (Prunus avium L.)

Although pollen dispersal has been extensively studied in trees, parameters influencing between-population variation are still poorly understood. In this study, we conducted paternity analyses on open-pollinated seeds in four natural populations of wild cherry (Prunus avium) with contrasting density and clonal propagation, using eight microsatellite loci and one self-incompatibility system locus. We also measured four quantitative traits and spatial positions as potential correlates of reproductive success. Levels of polyandry differed among populations and 30% of the seed families exhibited unequal paternal contributions, suggesting variation in reproductive success rather than variation in mate availability. Mating occurred preferentially among neighbours in all populations, suggesting that it is a common pattern in wild cherry and probably results from pollinator behaviour. Paternal success was positively correlated with diameter at breast height, as indicated in previous studies and tree dominance only resulted in higher paternal success in low density plots. Mating patterns were thus also affected by both density and tree size. Large-scale studies are needed to disentangle relative influences of these factors on the mating system and pollination success.     

EVALUATION OF CARDIOVASCULAR FLOW CHARACTERISTICS IN THE 129Sv MOUSE FETUS USING COLOR-DOPPLER-GUIDED SPECTRAL DOPPLER ULTRASOUND

The purpose of this study was to evaluate color- and spectral Doppler ultrasound in the establishment of normal functional cardiovascular development features in the mouse fetus. Mouse fetuses (129Sv strain) were studied in utero between embryonic day (EDs) 9.5 and 19.5. Time-velocity curves were derived from Doppler interrogation of the aorta and umbilical artery. The sample volume was accurately placed on the vessels of interest based on color-Doppler images. From these curves, the following parameters were obtained: heart rate (HR), acceleration time (AT), and deceleration time (DT). HR increased between EDs 9.5 and 19.5 from 102.9 to 303.2 b.p.m. For the other parameters, the most significant change observed was the increase of DT in the umbilical artery at the end of pregnancy, corresponding to the appearance of a diastolic flow. We report the use of a commercially available, clinical, ultrasound unit to obtain quantitative data on the cardiovascular development in the mouse fetus. These results may be useful for the recognition of in utero cardiovascular dysfunction in transgenic or knock-out fetus.     

Genetic properties influencing the evolvability of gene expression

Identifying the properties of gene networks that influence their evolution is a fundamental research goal. However, modes of evolution cannot be inferred solely from the distribution of natural variation, because selection interacts with demography and mutation rates to shape polymorphism and divergence. We estimated the effects of naturally occurring mutations on gene expression while minimizing the effect of natural selection. We demonstrate that sensitivity of gene expression to mutations increases with both increasing trans-mutational target size and the presence of a TATA box. Genes with greater sensitivity to mutations are also more sensitive to systematic environmental perturbations and stochastic noise. These results provide a mechanistic basis for gene expression evolvability that can serve as a foundation for realistic models of regulatory evolution.     

Inhibitor-free DNA for real-time PCR analysis of synovial fluid from horses, cattle and pigs

The potential of five different commercial DNA isolation methods to remove real-time PCR inhibitors from the synovial fluid of horses, cattle and pigs was investigated. All kits with the exception of one included a silica column-based purification of the DNA. With the fifth kit, DNA purification is achieved by removing contaminating macromolecules by a desalting process. We used a recently developed method based on comparison of the real-time PCR signal of an artificial target incorporated into each PCR reaction in the presence of the isolated DNA from the sample, and in control samples containing water instead of isolated DNA. This was followed by statistical analysis of the data. Inhibition and subsequent reduction of the endpoint fluorescence in the real-time PCR reaction was encountered in many cases. Less frequently, the target copy number in the samples was underestimated. However, we found no experimental evidence of a negative influence of the reduced endpoint fluorescence signal on the detection limit of the real-time PCR assay. All kits tested were useful for analyzing pelleted synovial fluid from horses, cattle and pigs. When analyzing non-pelleted synovial fluid, three kits - two based on silica columns and one employing a desalting process - yielded inhibitor-free DNA for real-time PCR analysis.     

Wirkung mechanischer Belastung auf Gefüge und Ertragsleistung einer Löss‐Parabraunerde mit zwei Bearbeitungssystemen

Effect of mechanical stress on structure and productivity of a loess‐derived Luvisol with conventional and conservation tillage In Germany farmers are committed to caring for the land by a soil protection law. Yet vehicles with ever increasing axle load endanger productivity and environmental quality of arable soils. In spring of 1995 a field experiment was startet on a wet silty Luvisol to test the effect of single mechanical loading on soil and crop characteristics, when managed by mouldboard ploughing (PL) or conservation tillage (CT). CT soils are considered to be more resistant against compactive stresses and to recover from degeneration more rapidly than PL soils. Beside an unwheeled control the loading treatments were light (2 × 2.5 t; number of wheel passes times wheel load); medium (2 × 5 t) and high (6 × 5 t). In 1995 even light loading of the PL soil caused a significant yield decline by 50% in spring barley, but this happened on CT soil only with high loading. In subsequent years with winter wheat and winter barley yield decline was less distinct. Loading of PL soil reduced total root length (from 4 to 1 km m⁻²) and rooting depth (from 70—90 to 40—70 cm), but on CT soil only root length was diminished by high loading. A tillage‐traffic pan (30—35 cm) hindered subsoil rooting in PL, which was favored in CT by earthworm channels. High loading caused compaction to at least 50 cm depth. Within the pan of the PL soil, penetration resistance attained 5 MPa and bulk density 1.65 g cm⁻³. In the CT soil the zone of maximum compaction was closer to the surface (15—25 cm). In PL soil the saturated hydraulic conductivity and the O₂‐diffusion coefficient gradually decreased with loading, but in CT soil only with heavy loading. The compacted top soil was broken in subsequent years by ploughing (PL: 25 cm) or rotary implements (CT: 5—8 cm). With PL, structure in the pan layer and subsoil did not recover, and rooting depth was still limited. Some restoration, however, was indicated with CT. Here transmitting properties increased in time, which was attributed to the reconstruction of root and earthworm channels, as demonstrated by computer tomography. We conclude that in silty soils compacted layers below ploughing depth will hardly be regenerated by internal processes. CT soils are less susceptible to loading, but high stresses are harmful too. Therefore recommending CT as a measure for protecting soil from compaction would not be enough, considering the present development towards heavy field machinery.     

Marker selection for <Emphasis Type="Italic">Fusarium</Emphasis> head blight resistance based on quantitative trait loci (QTL) from two European sources compared to phenotypic selection in winter wheat

Fusarium head blight (FHB) infects all cereals including maize and is considered a major wheat disease, causing yield losses and mycotoxin contamination. This study aimed to compare the realized selection gain from marker and phenotypic selection in European winter wheat. A double cross (DC) combined three FHB resistance donor-QTL alleles (Qfhs.lfl-6AL and Qfhs.lfl-7BS from ‘Dream’, and one QTL on chromosome 2BL from ‘G16-92’) with two high yielding, susceptible winter wheats, ‘Brando’ and ‘LP235.1’. The base population of 600 DC derived F₁ lines was on one hand selected for the respective QTLs by SSR markers (marker-selected cycle, CM), resulting in 35 progeny possessing different combinations of beneficial donor-QTL alleles. On the other hand it was selected phenotypically, only by FHB rating, and the best 20 lines were recombined and selfed (phenotypically selected cycle, CP). The variants CP, CM, and an unselected variant (C0) were tested at four locations by inoculation of Fusarium culmorum. Resistance was measured as the mean of multiple FHB ratings (0–100%). FHB severity was reduced through both phenotypic and marker selection by 6.2 vs. 5.0%, respectively. On a per-year basis, marker selection by 2.5% was slightly superior to phenotypic selection with 2.1%, because the first variant saved 1 year. Marker-selected lines were on average 8.6 cm taller than phenotypically selected lines. A high genetic variation within the marker-selected variant for FHB resistance and the high effect of a resistance-QTL allele on straw length indicate that additional phenotypic selection will further enhance selection gain.