Analysis of the coat protein gene of Indian <Emphasis Type="Italic">Potato virus X</Emphasis> isolates for identification of strain groups and determination of the complete genome sequence of two isolates

Complete coat protein (CP) gene sequences of 66 Potato virus X (PVX) isolates were sequenced and compared with other PVX isolates. The CP gene of these isolates shared 93.9–100.0 % and 97.0–100.0 % identities among them at nucleotide and amino acid sequence level, respectively. Phylogenetic analysis with isolates of known PVX strain groups showed that all 66 isolates were found in clade I (strain groups 1, 3 and 4) and none of them in Clade II (strain groups 2 and 4). The Indian isolates had the 714 bp coat protein gene and were closer to clade I isolates with 92.9–99.5 % identities and distantly related to Clade II isolates (74.2 to 80.0 % identities). Hence, these isolates may belong to either of the strain groups 1, 3 and 4. A threonine residue at position 122 and glutamine residue at position 78 were found conserved in all the Indian isolates suggesting that these isolates cannot overcome Rx1gene and Nx gene mediated resistance, characteristic of group 1 and 3. However, unique amino acid substitutions were observed in Indian isolates and further studies are required to ascertain their role in symptom expression, virulence and host range. In addition, whole genome sequences of two isolates one each from Jalandhar (Punjab) and Kufri (Himachal Pradesh) were also determined. They were 6435 nts long with five ORFs and shared 81.4–97.2 % identities to clade I isolates from USA, Russia, India, Iran, China, Japan, Taiwan and 77.0 to 77.5 % identities with clade II isolates from Peru.     

Micronutrient enrichment mediated by plant-microbe interactions and rice cultivation practices

A field experiment was conducted to evaluate the effect of different plant growth promoting microorganisms (PGPM) on micronutrient enrichment of rice crops grown under conventional (flooded) and SRI (System of Rice Intensification) practices. Significant differences were recorded among treatments and cultivation practices in terms of soil microbial activity reflected in enhanced nutrient uptake, enzyme activity, and yield. The Anabaena-based biofilm inoculants were particularly superior under both methods of cultivation, leading to 13–46% enhancement of iron and 15-41% enhancement of zinc in rice grains over uninoculated controls. SRI was found to be superior in terms of enhancing the concentration of zinc, copper, iron, and manganese (Zn, Cu, Fe and Mn), particularly in grains, and significant in increasing the activity of defense- and pathogenesis- related enzymes and yield parameters. This study illustrates the utility of cyanobacteria-based inoculants for both methods of rice cultivation and their significant interactions with the plant, leading to micronutrient enrichment of rice grains. Such formulations can complement the current biofortification strategies and help in combating the problems of malnutrition globally.     

Modulation of biochemical indices in common carp (Cyprinus carpio L.) under the influence of toxic cyanobacterial biomass in diet

Cyanobacteria are producers of potent and environmentally abundant microcystins, representing an emerging global health issue. In the present study, we investigated the impact of cyanobacterial biomass on biochemical indices of common carp (Cyprinus carpio L., average weight of 246 ± 73 g) under laboratory conditions. The fish were fed a diet containing cyanobacterial biomass with microcystins in high concentration (0.4 mg/kg of fish weight and day) for 28 days. Statistical evaluation of the influence of the cyanobacterial biomass in food on the biochemical indices of the juvenile carp showed only minor differences. The activity of aspartate aminotransferase value and the urea concentration were significantly reduced compared to control group. The biochemical parameters of fish blood plasma significantly rose during the experiment in the control group as well as in the experimental group. This state was probably influenced by the environmental conditions and the fish diet. A significant rising value was established in calcium creatinine, total protein, phosphorus, lactate, urea and natrium. The present study demonstrates that the oral exposure of toxic cyanobacterial biomass has a minor influence on the biochemical indices of common carp and that the effect of other factors, e.g., nutrition is more visible.     

Compensatory growth,feed intake and body composition of Labeo rohita fingerlings following feed deprivation

Ten‐week study was performed on Labeo rohita fingerlings (av. wt. 3.75 ± 0.06 g) to investigate the nature of compensatory growth. Fingerlings were deprived of food for 0 (control), 1 (D1), 2 (D2) or 3 (D3) weeks and refed to satiation for 5 weeks. The feed deprivation was carried out in D3 group on week 3, 4 and 5; D2 group on week 4 and 5; D1 group on week 5, and refeeding of all the groups were started from week 6 onwards. The D1 and D2 groups caught up in body weight with that of control fish within 2 weeks and 4 weeks of refeeding, respectively, but the D3 group had significantly (P < 0.05) lower body weight than the control after 5 weeks of refeeding. Higher growth efficiency was observed in all the feed deprived groups in the 1st week of refeeding only. Feed intake in D1 group became similar with the control after 5 weeks of refeeding, but the D2 and D3 groups were still hyperphagic when the experiment terminated. Thus, compensatory growth was due to hyperphagia and improved growth efficiency. In conclusion, complete compensatory growth was observed in L. rohita fingerlings after feed deprivation of 1 and 2 weeks.     

Molecular and phenotypic diversity of ICARDA spring barley (<Emphasis Type="Italic">Hordeum vulgare</Emphasis> L.) collection

Plant breeders are interested in using diverse genotypes in hybridization that can segregate for traits of importance with possibility of selection and genetic gain. Information on molecular and agro-morphological diversity helps the breeders reduce the effort for parental selection and helps the advancement of generations. A phenotypic and molecular diversity study, using 24 traits (agronomic and disease) and 6519 SNPs in a diverse collection of 336 spring barley genotypes, was carried out at Marchouch and Jemma Shiam research stations in Morocco. Based on structure and multivariate analyses, strong differentiation between the two- and six-row types were observed. The linkage disequilibrium (LD) decay of the current collection (for the combined population) was up to 3.58 cM (r ² = 0.15) while LD decay were estimated 3.91 and 2.36 cM for two- and six-row barley, respectively. PCA of agro-morphological traits revealed grain per spike, net form of net blotch (NFNB), spot form of net blotch (SFNB), and 1000 kernel weight were the most discriminatory traits in the current collection. Association mapping in the two independent populations will be ideal for identification of markers, and QTL related to traits. The generated information on relatedness between individuals will help identify diverse genotypes for breeding programs.     

<Emphasis Type="Italic">Helianthus tuberosus</Emphasis> L. agg. in the Carpathian Basin: a blessing or a curse?

Helianthus tuberosus agg., an herbaceous perennial plant from the Asteraceae family, is native to North America and was introduced as a crop to Europe in the seventeenth century. The status of this plant has been rather controversial in the Carpathian Basin. This paper reviews its taxonomy, chorology, and ethnobotany in this region, using data obtained from herbarium specimens, ethnobotanical surveys performed in Transylvania, and data published earlier, documenting the invasive features of the plant since the beginning of the nineteenth century. Our results suggest that (1) Helianthus tuberosus agg. has been present in the Carpathian Basin from the nineteenth century, (2) its taxonomy is problematic since the first part of the nineteenth century; (3) ethnobotanical surveys confirmed that the plant’s tuber has been locally used mostly as a food in Transylvania, collected from cultivation. Overall, Helianthus tuberosus agg. is both a ‘blessing and a curse’ at the same time, it is a valuable crop with beneficial nutritional value, and also an environmentally dangerous invasive element for the diversity of the flora of the Carpathian Basin.     

Effect of Compost and Hydroabsorbent Polymer on Tree Growth and Soil Properties in a Tropical Urban Environment

Horticultural application of hydroabsorbent polymer (HP) has drawn research attention due to its perceived benefits to plant growth. Few studies have compared the use of compost and HP amendments on tree establishment in tropical urban environments. An experiment was conducted to assess the effect of compost (40% v v^–1) and HP (3 and 5 kg m^–3) on the growth of two native tree saplings (Calophyllum soulattri and Syzygium myrtifolium) in loamy and sandy soils. The HP treatments significantly affected soil pH and extractable phosphorus (P) and potassium (K), whereas combined application of compost and HP (5 kg m^–3) resulted in significantly higher nitrogen (N) in both soil types. Plant diameter and height were significantly higher following HP application. This experiment demonstrates the efficacy of HP that can cater the plant requirements at the initial growth stages which are crucial for their successful establishment in tropic urban degraded soils.     

Gut melatonin response to microbial infection in carp <Emphasis Type="Italic">Catla catla</Emphasis>

The purpose of present study was to demonstrate the response of gut melatoninergic system to Aeromonas hydrophila infection for 3 or 6 days and search for its correlation with the activity of different antioxidative and digestive enzymes to focus their interplay under pathophysiological conditions in carp (Catla catla). Microscopic study of gut in infected fish revealed degenerative changes in the tunica mucosa and lamina propria layers with sloughed off epithelial cells in the lumen. The activity of each digestive enzyme was reduced, but the levels of melatonin, arylalkylamine-N-acetyl transferase protein, the key regulator of melatonin biosynthesis, and different enzymatic antioxidants in gut were gradually and significantly increased with the progress of infection. Gut melatonin concentrations in A. hydrophila challenged carp by showing a positive correlation with the activity of each antioxidative enzyme, and a negative correlation with different digestive enzymes argued in favor of their functional relation, at least, during pathological stress. Moreover, parallel changes in the gut and serum melatonin titers indicated possible contribution of gut to circulating melatonin. Collectively, present carp study provided the first data to suggest that endogenous gut melatonin may be implicated to the mechanism of response to microbial infections in any fish species.     

Microtopography as a factor in the degradation of Vertisols in central India

Earlier studies on soil degradation in Vertisols of the Purna Valley of central India indicated that the semiarid climate characterized by a mean annual rainfall (MAR) of 875 mm and a tropustic moisture regime is responsible for the development of calcareous sodic soils. Recent observations, however, indicate that in the adjacent east upland of the Purna Valley, namely in the Pedhi Watershed, Vertisols have drainage problems, although the area receives a higher MAR than the Purna Valley, the total MAR being 975 mm. The Pedhi Watershed covers an area of 44 321 ha, and is characterized by a tropustic moisture regime and a hyperthermic temperature regime. Vertisols of the Pedhi Watershed are deep, calcareous, clayey and very dark greyish‐brown to dark yellowish‐brown in colour. Vertisols occur on both microhigh (MH) and microlow (ML) positions. The distance between the MH and ML positions is approximately 6 km and the elevation difference is 0.5–5 m. Cracks > 1 cm wide extend down to the slickenside zones in soils of ML whereas they cut these zones in some soils in MH positions. The soils of the MH positions are strongly alkaline and those of ML are mildly alkaline. The present study attempts to relate the distinctly different morphological and chemical properties of Vertisols in the MH and ML positions to pinpoint the prime factor responsible for the impairment of drainage on the basis of physical, chemical, mineralogical and micromorphological data. These data were obtained from 13 Vertisol pedons of methodically selected sites in the Pedhi Watershed. Despite their similar coefficient of linear extensibility (COLE), volumetric shrinkage potential (VSP), clay contents and amounts of fine smectite clay, the plasmic fabric of the slickenside horizons in soils of ML is porostriated, whereas in soils of MH it is stipple speckled to mosaic speckled, indicating weak plasma separation. The soils have both pedogenic and non‐pedogenic calcium carbonates (CaCO₃). The semiarid climate induces the precipitation of CaCO₃ with a concomitant development of subsoil sodicity. The degree of development of sodicity (Exchangeable sodium percentage (ESP) ≥ 5) is more in soils of MH as evidenced by the higher amount of pedogenic CaCO₃ (PC). The lack of water in soils of MH position is the reason for weak swelling of smectite, for larger amounts of PC, for higher alkalinity and sodicity, and for cracks cutting through the slickenside zones. Formation of sodic Vertisols in MH alongside non‐sodic Vertisols in ML positions is a unique phenomenon. It develops because of microtopographic differences which modify distribution of water across the landscape and facilitate greater penetration of rainwater in ML positions. The development of sodicity due to microtopographic differences assumes a great importance when a future land resource management programme on Vertisols in the higher MAR zone of overall a semiarid climate is considered. Copyright © 2002 John Wiley & Sons, Ltd.