Automated identification of sugar beet diseases using smartphones

Cercospora leaf spot (CLS) poses a high economic risk to sugar beet production due to its potential to greatly reduce yield and quality. For successful integrated management of CLS, rapid and accurate identification of the disease is essential. Diagnosis on the basis of typical visual symptoms is often compromised by the inability to differentiate CLS symptoms from similar symptoms caused by other foliar pathogens of varying significance, or from abiotic stress. An automated detection and classification of CLS and other leaf diseases, enabling a reliable basis for decisions in disease control, would be an alternative to visual as well as molecular and serological methods. This paper presents an algorithm based on a RGB‐image database captured with smartphone cameras for the identification of sugar beet leaf diseases. This tool combines image acquisition and segmentation on the smartphone and advanced image data processing on a server, based on texture features using colour, intensity and gradient values. The diseases are classified using a support vector machine with radial basis function kernel. The algorithm is suitable for binary‐class and multi‐class classification approaches, i.e. the separation between diseased and non‐diseased, and the differentiation among leaf diseases and non‐infected tissue. The classification accuracy for the differentiation of CLS, ramularia leaf spot, phoma leaf spot, beet rust and bacterial blight was 82%, better than that of sugar beet experts classifying diseases from images. However, the technology has not been tested by practitioners. This tool can be adapted to other crops and their diseases and may contribute to improved decision‐making in integrated disease control.     

Suppressive effect of Azotobacter chroococcum on Rhizoctonia solani infestation of potatoes

Isolates ofAzotobacter chroococcum were found to be promising for the control of infestation of potato plants withRhizoctonia solani. Inoculation with an isolate ofVerticillium biguttatum in combination with isolates ofA. chroococcum effectively protected sprouts, stems and stolons against infestation withR. solani. The effect of inoculation varied with soil temperature.No sclerotia were formed on potatoes harvested from soil in pots inoculated with isolates ofA. chroococcum plusV. biguttatum under glasshouse conditions; the yield increased significantly over the control.Samenvatting Enkele isolaten vanAzotobacter chroococcum bleken sterk antagonistisch ten opzichte vanRhizoctonia solani en leken goed bruikbaar voor een biologische bestrijding van deze ziekteverwekker van de aardappel.Beënting van de grond metVerticillium biguttatum enA. chroococcum gaf — in potproeven — een effective bescherming van spruiten, stengels en stolonen tegen aantasting doorR. solani.De vorming van sclerotiën bleef achterwege op knollen die gevormd waren in grond die was beënt metA. chroococcum plusV. biguttatum. De opbrengst uit behandelde grond was hoger dan die uit onbehandelde.De effectiviteit van de behandeling is afhankelijk van de temperatuur.     

Comparison of immunofluorescence staining and indirect isolation for the detection of Corynebacterium flaccumfaciens in bean seeds1

Corynebacterium flaccumfaciens, causing bacterial wilt in bean, is a quarantine organism for Europe. This paper compares two methods for detecting C. flaccumfaciens in seed lots on the market. Experimentally contaminated bean seeds were homogenized and a standard extraction and concentration procedure was used. The final pellets were used for immunofluorescence staining and indirect isolation (through bean seedlings). The immunofluorescence staining sensitivity threshold was 1.23 × 10⁷, corresponding to 1.82 × 10⁴ fluorescent cells per ml of final concentrate. The risk of false negative reactions to immunofluorescence staining caused by serologically unrelated C. flaccumfaciens strains was also examined. The indirect isolation sensitivity threshold was 1.23 × 10⁶ producing 43% symptomatic plants and 53% positive reisolation. There was no serious interference between C. flaccumfaciens and Pseudomonas syringae pv. phaseolicola in mixed inoculations and both pathogens were successfully reisolated. The comparative results are discussed in relation to the applicability of the methods to commercial lots of bean seeds.     

Genetic Structure of Melampsora Epitea Populations in Swedish Salix Viminalis Plantations

Amplified fragment length polymorphism (AFLP) was used to study the genetic structure of populations of the willow leaf rust, Melampsora epitea, in Swedish willow plantations. In total, 197 isolates collected from Salix viminalis clones in three locations in Sweden were analysed. AFLP profiles based on 83 markers were used to compute genetic distances between pairs of individuals. High levels of gene and genotypic diversity were detected in all populations, with 96% of the AFLP loci being polymorphic and with normalized Shannon's diversity indices ranging from 0.977 to 1.0. Analysis of molecular variance (AMOVA) showed small significant differences among locations, although most of the molecular variability was found within locations (97.5%). Five isolates from one willow clone in one location differed markedly from the common pattern. When these five exceptional isolates were excluded, no significant differences among willow clones were found with AMOVA. Sexual reproduction and spore migration appear to be important factors for the population genetic structure of this pathogen.     

The phytopathogenic mollicute-insect vector interface: a closer look

ABSTRACT Spiroplasma citri, transmitted by phloem-feeding leafhoppers, moves from the gut lumen through the gut wall, hemolymph, and salivary glands and multiplies in insect tissues. Nontransmissible lines were deficient in their ability to cross these barriers. Molecular analysis revealed extensive chromosomal rearrangements between the transmissible and nontransmissible spiroplasma lines including a large chromosomal inversion and deletions of about 10 kb at each inversion border. One open reading frame of the deleted region, cloned from the transmissible strain BR3-3X, encodes an integral membrane protein of 58 kDa that shares limited sequence similarity with major adhesin proteins of two zoopathogenic mycoplasmas. Adhesion of spiroplasmas to cultured leafhopper cells was inhibited by proteases, suggesting that adherence to host cells is mediated by spiroplasma membrane protein(s). A hypothetical model for insect transmission of phytopathogenic mollicutes is presented.     

Comparison of two sampling methods for leafhoppers (Homoptera, Cicadellidae) associated with sesame in the east Mediterranean region of Turkey

Yellow sticky-traps and a modified Johnson-Taylor suction-trap were used to index the relative population dynamic of leafhoppers associated with sesame in the east Mediterranean region of Turkey. Comparison of the obtained results signified important differences between both traps. 32 leafhoppers species were caught in the suction-trap while only 18 species were determined on yellow sticky-traps. For most of the leafhopper species, relatively more males were determined on the yellow-traps than in the suction-trap, indicating a higher activity of male leafhoppers during daytime hours. A close relationship between the seasonal flight pattern as indexed by sticky-traps and by suction-trap was only observed forAsymmetrasca decedens (Paoli) andEmpoasca decipiens Paoli. For most other leafhopper species no or only a very poor correlation for the relative population dynamic was determined between both traps. Important leafhopper vector species, e.g.,Circulifer haematoceps (Mulsant et Rey) andOrosius orientalis (Matsumura) were better represented in yellow sticky-trap catches than they were in the suction trap.

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Zusammenfassung  Die relative Populationsdynamik der mit Sesam assozüerten Zwergzikaden wurde mit beleimten Gelbtafeln und einer stationären Johnson-Taylor-Saugfalle an der südöstlichen Mittelmeerküste der Türkei untersucht. Beim Vergleich beider Methoden zeigten sich deutliche Unterschiede zwischen den Fallentypen. In der Saugfalle konnten 32 Zwergzikadenarten erfaßt werden, während dies auf den Gelbtafeln nur 18 Arten waren. Die meisten Zwergzikadenarten zeigten auf den Gelbtafeln ein stark in Richtung der Männchen verschobenes Geschlechterverhältnis, was eine erhöhte Flugaktivität der Männchen während des Tageslichts vermuten läßt. Auch der Verlauf der saisonalen Flugaktivität war für die meisten Zwergzikadenarten zwischen den beiden Fallentypen sehr unterschiedlich, und es konnten zwischen Saug- und Gelbfalle keine deutlichen Korrelationen hergestellt werden. Nur für die beiden zusammen erfaßten ArtenAsymmetrasca decedens (Paoli) undEmpoasca decipiens Paoli wurde ein enger Zusammenhang zwischen der mit der Saugfalle und den gelben Leimtafeln erfaßten relativen Populationsdynamik festgestellt. Wichtige Vektorenarten unter den Zwergzikaden, z. B.Circulifer haematoceps (Mulsant et Rey) undOrosius orientalis (Matsumura) waren auf den Gelbtafeln besser repräsentiert als in der Saugfalle.

     

Population Structure and Disease Development of Cryphonectria parasitica in European Chestnut Forests in the Presence of Natural Hypovirulence

ABSTRACT The Cryphonectria parasitica populations in two 6-year-old European chestnut (Castanea sativa) coppices were investigated in southern Switzerland over a period of 4 years. Occurrence of white isolates indicating an infection with Cryphonectria hypovirus, vegetative compatibility groups (VCGs), hypovirulence conversion capacity, and mating types were used to characterize the populations. Sampling of randomly chosen cankers in the first year yielded 59% white isolates in one and 40% in the other population. The distribution of the VCGs and mating types was similar among white and orange isolates, indicating a homogeneous infection of the two populations by the hypovirus. Fourteen VCGs were found in the first population, 16 VCGs in the second. Altogether, 21 VCGs were determined. The same three VCGs dominated in both populations, comprising more than 60% of all isolates. Several VCGs were represented only by white isolates. Five of the six most common VCGs were clustered in two hypovirulence conversion groups, with almost 100% hypovirus transmission within each cluster. Repeated sampling of the same cankers in 1990, 1992, and 1994 did not reveal an increase of white isolates. The portion of blighted stems rose from 37% to about 60% in both plots within 4 years. In this time, chestnut blight killed 15% and competition an additional 21% of the sprouts. Predominantly, sprouts with low diameters at breast height were killed. The growth rate of new cankers was high in their first year and decreased gradually in the following years. A role of hypovirulence in the decline of disease severity was evident since (i) cankers yielding white isolates grew slower and killed considerably fewer sprouts than cankers with orange isolates; and (ii) the majority of the cankers yielded white isolates at least once during the 4-year observation period.     

Erfahrungen bei der bek?mpfung der wanderratte,Rattus norvegicus (Berk.) 1999 in Magdeburg

Data of a pest control business was used to study infestation with the brown, or Norway rat (Rattus norvegicus Berkenhout, 1769]) in the City of Magdeburg for the year 1999. Swarms of rats were found to live all over the territory of the city. Blocks of residential buildings erected during G. D. R. times and, more specifically, their basements were noted to be focal sites of infestation with rats. The problem of rats living in the sewerage system of the city turned out to be unresolved. Detailed reference is made to rodenticides and active substances as well as to control strategies. The priority given to economical issues over the application of scientific findings is considered to be the decisive factor which accounts for the needs in the extermination of rats.      

Erfahrungen bei der bek?mpfung der wanderratte,Rattus norvegicus (Berk.) 1999 in Magdeburg

Data of a pest control business was used to study infestation with the brown, or Norway rat (Rattus norvegicus Berkenhout, 1769]) in the City of Magdeburg for the year 1999. Swarms of rats were found to live all over the territory of the city. Blocks of residential buildings erected during G. D. R. times and, more specifically, their basements were noted to be focal sites of infestation with rats. The problem of rats living in the sewerage system of the city turned out to be unresolved. Detailed reference is made to rodenticides and active substances as well as to control strategies. The priority given to economical issues over the application of scientific findings is considered to be the decisive factor which accounts for the needs in the extermination of rats.