Rice Yellow Mottle Virus is Seed-borne but not Seed Transmitted in Rice Seeds

Seed transmission of two pathogroups of rice yellow mottle virus from Soudano-Sahelian areas of West Africa was studied in several rice genotypes. The virus was detected by enzyme-linked immunosorbent assay and the highly susceptible rice variety BG 90-2 was used for infectivity assays. In most of the rice genotypes studied (17 out of 21), rice yellow mottle virus was detected in all seed parts including glumella, endosperm and embryo at a rate ranging from 65 to 100%. Nevertheless, no seed-borne infection was found. Infectivity of the virus decreased throughout the process of seed formation suggesting inactivation of the virus as a result of seed maturation and desiccation. It was concluded that rice yellow mottle epidemics do not develop from seed-borne infections in rice seeds.     

Effect of Days Post-Partum, Breed and Ovum Pick-Up Scheme on Bovine Oocyte Recovery and Embryo Development

The objective of this study was to investigate (i) the effect of two different ovum pick-up (OPU) schemes (once vs twice weekly aspirations) on oocyte recovery rate, quality and subsequent in vitro embryo development, (ii) the influence of days post-partum on oocyte recovery and (iii) possible differences in OPU results from two different herds. In group A, OPU was performed twice weekly in two Holstein Friesian (HF) and three Danish Red and White (DRW) cows from a private herd. In the research herd, two groups of eight HF cows were investigated: group B (OPU once weekly) and group C (OPU twice weekly). The collected oocytes were subsequently submitted to in vitro embryo production. More oocytes were recovered from the private herd when compared with the research herd. In the research herd, the twice weekly scheme aspirated more oocytes than the once weekly scheme. The quality of the retrieved oocytes was significantly different between groups B and C but not between groups A and C, and HF cows yielded higher quality oocytes than DRW cows (p = 0.029). Oocytes from group C showed higher level of embryonic development than group B oocytes. No differences in blastocyst rates were observed between groups A and C. Session affected the number of retrieved oocytes and subsequent developmental rates, with these being lower in the first compared with the last sessions. Finally, there was no significant effect of days post-partum in the number and quality of the retrieved oocytes, likely because of the small group size and high variation between sessions.     

Early mortality of lambs in African traditional livestock production systems

Early mortality of lambs is a major constraint on total productivity. In 6 different environments the early death rate varied from 12 to 30% of all lambs born. Cause of death differed among systems but only a proportion could definitely be ascribed to infectious disease: nutrition, management and other environmental factors also contribute to the mortality rate. Mortality can be reduced by isolating solutions due to any of these factors but best results (lowest death rates) would be obtained by an integrated package containing elements of all these aspects.     

Fluorescent Stain Method for the Simultaneous Determination of Mitochondrial Potential and Integrity of Plasma and Acrosomal Membranes in Boar Sperm

The purpose of this study was to validate a technique for simultaneous evaluation of the plasma, acrosomal and mitochondrial membranes in boar spermatozoa, using an association of fluorescent probes: Propidium iodide (PI), fluorescein isothiocyanate-conjugated Pisum sativum agglutinin (FITC-PSA) and JC-1. Three ejaculates from each of four different boars, all showing motility >or=80% and abnormal morphology 相似文献   

Progesterone and Caspase-3 Activation in Equine Cyclic Corpora Lutea

Soon after ovulation, the newly formed corpus luteum (CL) starts secreting progesterone (P(4)), necessary for implantation. The CL, an ovarian transient endocrine organ, undergoes growth and regression throughout its life span. The objective of this study was to evaluate if caspase-3 mediates cell death in the equine cyclic luteal structures and relate it to luteal endocrine function. Blood and luteal tissue were collected during the breeding season after slaughter from 38 randomly assigned cycling mares. Luteal tissues were classified as corpora haemorrhagica (CH; n = 7); mid luteal phase corpora lutea (Mid-CL; n = 17); late or regressing corpora lutea (Late-CL; n = 9) and corpora albicans (CA; n = 5). Plasma P(4) concentration, determined by radioimmunoassay, showed a significant increase from CH to Mid-CL (p < 0.001), followed by a decrease to Late-CL (p < 0.001) and CA (p < 0.001). Caspase-3 processing and poly (ADP) ribose polymerase (PARP) degradation were assessed by western blotting. Active caspase-3 was twofold increased in Mid-CL, Late-CL and CA as compared with CH (p < 0.05). Immunocytochemistry also showed a significant increase in caspase-3 expression in large luteal cells in all structures when compared with CH (p < 0.05). Consistently, the endogenous caspase-3 substrate, PARP, was markedly degraded from CH to CA (p < 0.05). In fact, the ratio of full-length to degraded PARP showed a significant decrease from CH to Mid-CL, Late-CL and CA (p < 0.05). Finally, the decrease in P(4) from Mid- to Late-CL coincided with no further increases in apoptosis. In conclusion, these results suggest that the effector caspase-3 of apoptosis, might play an important role during luteal tissue involution in the mare, even though its relationship with P(4) remains to be elucidated.     

Effect of nitrate/ammonium ratio on biomass production,nitrogen accumulation,and use efficiency in sorghums of different origin

Plant nitrogen (N) uptake, growth, and N use efficiency may be affected by N form (NO₃ ^‐or NH₄ ⁺) available to the root. The objectives of this study were to determine the effect of mixed N form on dry matter production and partitioning, N uptake, and biomass N use efficiency defined as total dry matter produced per unit plant N (NUE₁) in U.S. and tropical grain sorghums [Sorghum bicolor (L.) Moench]. The U.S. derived genotype CK 60 and three tropical genotypes, Malisor‐7, M 35–1, and S 34, were evaluated in a greenhouse trial using three nutrient solutions differing in their NO₃ ^‐/NH₄ ⁺ ratio (100/0, 75/25, 50/50). Shoot and root biomass, N accumulation, and NUE, were determined at 10‐leaf and boot stages. Averaged over all genotypes, shoot and root biomass decreased when NH₄ ⁺ concentration was increased in the solution. Shoot biomass was reduced by 11% for 75/25 and 26% for 50/50 ratios, as compared to 100/0 NO₃ ^‐/NH₄ ⁺. Similarly, root biomass reduction was about 34% and 45% for the same ratios, respectively. Increasing NH₄ ⁺ concentration also altered biomass partitioning between shoot and root as indicated by decreasing root/shoot ratio. Total plant N content and NUE₁ were also reduced by mixed N source. Marked genotypic variability was found for tolerance to higher rates of NH₄ ⁺. The tropical line M 35–1 was well adapted to either NO₃ ^‐ as a sole source, or to an N source containing high amounts of NH₄ ⁺. Such a characteristic may exist in some exotic lines and may be used to improve genotypes which do not do well in excessively wet soil conditions where N uptake can be reduced.     

Simultaneous Measurement of Local Gain and Electron Density in X-ray Lasers

X-ray lasers (XRLs) have experimental average gains that are significantly less than calculated values and a persistently low level of spatial coherence. An XRL has been used both as an injected signal to a short XRL amplifier and as an interferometer beam to measure two-dimensional local gain and density profiles of the XRL plasma with a resolution near 1 micrometer. The measured local gain is in agreement with atomic models but is unexpectedly spatially inhomogeneous. This inhomogeneity is responsible for the low level of spatial coherence observed and helps explain the disparity between observed and simulated gains.     

A novel Gateway®-compatible binary vector allows direct selection of recombinant clones in Agrobacterium tumefaciens

Background

In vivo detection of protein-bound genomic regions can be achieved by combining chromatin-immunoprecipitation with next-generation sequencing technology (ChIP-seq). The large amount of sequence data produced by this method needs to be analyzed in a statistically proper and computationally efficient manner. The generation of high copy numbers of DNA fragments as an artifact of the PCR step in ChIP-seq is an important source of bias of this methodology.

Results

We present here an R package for the statistical analysis of ChIP-seq experiments. Taking the average size of DNA fragments subjected to sequencing into account, the software calculates single-nucleotide read-enrichment values. After normalization, sample and control are compared using a test based on the ratio test or the Poisson distribution. Test statistic thresholds to control the false discovery rate are obtained through random permutations. Computational efficiency is achieved by implementing the most time-consuming functions in C++ and integrating these in the R package. An analysis of simulated and experimental ChIP-seq data is presented to demonstrate the robustness of our method against PCR-artefacts and its adequate control of the error rate.

Conclusions

The software ChIP-seq Analysis in R (CSAR) enables fast and accurate detection of protein-bound genomic regions through the analysis of ChIP-seq experiments. Compared to existing methods, we found that our package shows greater robustness against PCR-artefacts and better control of the error rate.     

Effect of Three pFSH Doses on Superovulation and Embryo Quality in Goats During Two Breeding Seasons in North‐eastern Mexico

The aim of this research was to evaluate the effectiveness of three pFSH doses (80 mg; 145 mg and 215 mg) on ovarian response and on quantity and quality of transferable embryos of goats during the breeding and the non‐breeding seasons. Ovary structures were exposed (laparatomy under general anaesthesia) and numbers of follicles and corpora lutea were registered. Surgical embryo flushing was conducted to count and classify embryos. There were more follicles (3.4 ± 1.1) in does administered 80 mg of pFSH (p < 0.05) than in goats administered 145 mg of pFSH (2.2 ± 1.1) and 215 mg of pFSH (0.9 ± 0.6). Numbers of corpora lutea, blastocysts, and recovered and transferable embryos of goats administered 145 mg pFSH (13.4 ± 3.7, 2.42 ± 1.0, 3.4 ± 1.2 and 3.2 ± 1.1, respectively) and those of goats administered 215 mg pFSH (11.6 ± 2.6, 3.2 ± 0.9, 5.7 ± 1.5, and 5.6 ± 1.5) were greater (p < 0.05) than values obtained from goats administered 80 mg pFSH (4.0 ± 1.5, 0.5 ± 0.3, 1.0 ± 0.5, and 0.8 ± 0.5). Numbers of morula of does administered 80 and 145 mg pFSH (0.4 ± 0.4 and 0.8 ± 0.3) were lower (p < 0.05) than those obtained from animals treated with 215 mg pFSH (2.4 ± 0.9). There was no effect of season upon the analyzed variables. In conclusion, under the prevalent conditions in north‐eastern Mexico, administration of 145 or 215 mg pFSH in a decreasing dose schedule over 3.5 days to bred goats provided a satisfactory superovulatory result.