Banishing barberry: The history of Berberis vulgaris prevalence and wheat stem rust incidence across Britain

Wheat stem rust, caused by the fungus Puccinia graminis f. sp. tritici (Pgt), is a notoriously damaging disease of wheat and barley. Pgt requires two hosts to complete its lifecycle; undergoing asexual reproduction on cereal crops and completing sexual reproduction on Berberis spp. The latter stage of its lifecycle is of particular importance in temperate regions such as western Europe, where asexual urediniospores are unable to survive cold winter weather. In the past, the crucial role of Berberis in the lifecycle of stem rust led to intensive eradication campaigns, initially carried out by farmers in the face of hostile scientific opinion. In the United Kingdom, common barberry (Berberis vulgaris) is today a relatively rare plant. Stem rust is, however, currently experiencing a resurgence; at the same time, there has been a general increase in the prevalence of barberry and an upsurge in its planting which, in the United Kingdom, is associated with attempts to encourage the endangered barberry carpet moth (Pareulype berberata). This article situates current developments within a broader chronological framework, examining changing attitudes towards barberry and rust in England in the past and the history of the plant's use and cultivation. It assesses how widespread B. vulgaris really was in the environment historically, and thus the scale of its eradication. We suggest that Berberis was never widely established as an archaeophyte in the United Kingdom. Current attempts to re-establish it are based on a misunderstanding of the plant's historical status and could potentially pose a serious threat to food security.     

Incorporating spatial autocorrelation into the general linear model with an application to the yellowfin tuna (Thunnus albacares) longline CPUE data

Catch-per-unit-effort (CPUE) data have often been used to obtain a relative index of the abundance of a fish stock by standardizing nominal CPUE using various statistical methods. The theory underlying most of these methods assumes the independence of the observed CPUEs. This assumption is invalid for a fish population because of their spatial autocorrelation. To overcome this problem, we incorporated spatial autocorrelation into the standard general linear model (GLM). We also incorporated into it a habitat-based model (HBM), to reflect, more effectively, the vertical distributions of tuna. As a case study, we fitted both the standard-GLM and spatial-GLM (with or without HBM) to the yellowfin tuna CPUE data of the Japanese longline fisheries in the Indian Ocean. Four distance models (Gaussian, exponential, linear and spherical) were examined for spatial autocorrelation. We found that the spatial-GLMs always produced the best goodness-of-fit to the data and gave more realistic estimates of the variances of the parameters, and that HBM-based GLMs always produced better goodness-of-fit to the data than those without. Of the four distance models, the Gaussian model performed the best. The point estimates of the relative indices of the abundance of yellowfin tuna differed slightly between standard and spatial GLMs, while their 95% confidence intervals from the spatial-GLMs were larger than those from the standard-GLM. Therefore, spatial-GLMs yield more robust estimates of the relative indices of the abundance of yellowfin tuna, especially when the nominal CPUEs are strongly spatially autocorrelated.     

Determining reference values for stem water potential and maximum daily trunk shrinkage in young apple trees based on plant responses to water deficit

The use of plant water status indicators such as midday stem water potential (Ψ_stem) and maximum daily trunk shrinkage (MDS) in irrigation scheduling requires the definition of a reference or threshold value, beyond which irrigation is necessary. These reference values are generally obtained by comparing the seasonal variation of plant water status with the environmental conditions under non-limiting soil water availability. In the present study an alternative approach is presented based on the plant’s response to water deficit. A drought experiment was carried out on two apple cultivars (Malus domestica Borkh. ‘Mutsu’ and ‘Cox Orange’) in which both indicators (Ψ_stem and MDS) were related to several plant physiological responses. Sap flow rates, maximum net photosynthesis rates and daily radial stem growth (DRSG) (derived from continuous stem diameter variation measurements) were considered in the assessment of the approach. Depending on the chosen plant response in relationship with Ψ_stem or MDS, the obtained reference values varied between −1.04 and −1.46 MPa for Ψ_stem and between 0.17 and 0.28 mm for MDS. In both cultivars, the approach based on maximum photosynthesis rates resulted in less negative Ψ_stem values and smaller MDS values, compared to the approaches with sap flow and daily radial stem growth. In the well-irrigated apple trees, day-to-day variations in midday Ψ_stem and MDS were related to the evaporative demand. These variations were more substantial for MDS than for midday Ψ_stem.     

Influence of Salinity in the Bioavailability of Zn in Sediments of the Gulf of Cádiz (Spain)

This study assesses the effect of salinity in bioavailability and toxicity of Zn by means of laboratory bioassays by observing contamination in both sediment and water, accumulation of Zn in biological tissues, and histopathological damage in the gills and guts tissues of Ruditapes philippinarum clams, which were exposed to different types of sediments from the Gulf of Cádiz (SW Spain) as well as two dilutions of toxic mud coming from an accidental mining spill. With this objective, the coefficients of distribution (K _D) for Zn between overlying water and sediments were calculated, the histopathological frequencies in the tissues of the gills and guts of clams were determined, and the biota-sediment bioaccumulation factors as well as the bioaccumulation factors were quantified in the different stations. Results showed that the greatest histopathological damages appeared when the salinity values decreased. Statistical results showed that salinity was inversely correlated with histopathological damage (p?<?0.01) for the lesion index for gills. The most outstanding results were observed in the two dilutions of toxic mud (0.3% and 7.9%) at a salinity value of 10. Salinity was inversely correlated with the concentration of Zn in biological tissues (p?<?0.05) and inversely correlated with the concentration of Zn in water and sediment. Zn mobilization to the overlying water is produced when salinity values decrease.     

一种面向育种家的新型台式棉籽脱绒机

正棉籽酸脱绒会危害育种家人身安全和潜在环境。需要1种无需用酸,能有效去除棉短绒且对棉种萌发无不利影响的脱绒方法。为了优化棉籽机械脱绒流程,美国农业部农业研究中心(USDA-ARS)棉花生产与加工部门(Lubbock,Texas)研发创制了一台棉籽机械脱绒样机(图1,图2)。测试设计了应用7种滚筒衬垫(1种是不用任何研磨材料,其余6种分别采用不同的研磨材料)、1个或2个辊刷"擦     

Assessing seed desiccation responses of native trees in the Caribbean

New Forests - Native trees from the Caribbean were tested for seed desiccation responses, by adapting the “100-seed test” protocol. Ninety-seven seed lots of 91 species were collected...     

Membrane proteins of the endoplasmic reticulum induce high-curvature tubules

The tubular structure of the endoplasmic reticulum (ER) appears to be generated by integral membrane proteins, the reticulons and a protein family consisting of DP1 in mammals and Yop1p in yeast. Here, individual members of these families were found to be sufficient to generate membrane tubules. When we purified yeast Yop1p and incorporated it into proteoliposomes, narrow tubules (approximately 15 to 17 nanometers in diameter) were generated. Tubule formation occurred with different lipids; required essentially only the central portion of the protein, including its two long hydrophobic segments; and was prevented by mutations that affected tubule formation in vivo. Tubules were also formed by reconstituted purified yeast Rtn1p. Tubules made in vitro were narrower than normal ER tubules, due to a higher concentration of tubule-inducing proteins. The shape and oligomerization of the "morphogenic" proteins could explain the formation of the tubular ER.     

基于ANUSPLIN的时间序列气象要素空间插值

【目的】介绍ANUSPLIN在黄土高原多沙粗沙区时间序列气象要素的空间插值过程,为相关人员在ANUSPLIN的参数设置、误差分析和协变量要素选择等方面提供参考。【方法】以薄盘样条函数为插值理论,以专用气象数据插值软件ANUSPLIN为实现工具,并引入一个或多个协变量线性子模型,来实现多个气象要素的空间插值。【结果】完成了黄土高原多沙粗沙区时间序列(1980~2000年)多个气象要素月平均数据的栅格化,计算了气象要素随其影响因子变化的关系。【结论】ANUSPLIN以薄盘光滑样条函数为理论基础,引入协变量线性子模型,能较好地提高气象要素空间插值精度,且能反映气象要素随其影响因子变化的比率关系。在大多数情况下,该区模型选择以样条次数为3次的局部薄盘光滑样条函数模型为最佳。温度的空间插值相对比较容易,且误差较小,1995-07平均相对误差为1%;风速、水汽压的误差中等;日照时数和降雨量的误差较大,个别情况相对误差可超过50%。