Ecophysiology of iron homeostasis in plants

In nature, iron (Fe) occurs in abundance and ranks fourth among all elements on Earth’s surface. Still, its availability to plants is reduced, once this element is in the form of hydrated oxides, which can limit plant productivity and biomass production. On the other hand, in high concentrations, this essential micronutrient for the plants can become a toxic agent, increasing the environmental contamination. Fe is necessary for the maintenance of essential processes like respiration and photosynthesis, participating in the electron transport chain and in the conversion between Fe²⁺ and Fe³⁺, being a key element for carbon dioxide (CO₂) fixation and, therefore, important for crop production of cultivated or natural species. The balance of Fe should be strictly controlled, because both its deficiency and its toxicity affect the physiological process of plants. In aerated soils Fe is present in the form of Fe³⁺, which is the oxidized form and is less available to plants, so these organisms have developed different strategies for absorption, transport and storage of Fe. Deficiency and excess of Fe correlate with local soil conditions and with the care adopted in plant nutrition during the phenological phases and/or in the course of its cultivation. In situations of excessive accumulation of Fe in tissues, an enhancement of hydroxyl radical generation (OH^?) occurs by Fenton reaction. Here, we review the nutritional, genetic and ecophysiological aspects of uptake, translocation and accumulation of Fe ions in plants growing under conditions of deficiency or toxicity of this metal.     

Water retention characteristics of coarse porous materials to construct purpose-designed plant growing media

ABSTRACT

Among potential components to construct Technosols for urban greening purposes, the commercially available geogenic coarse porous materials (CPMs) are mainly used in practice because of their high porosity. However, the knowledge of the hydraulic behavior of CPMs as well as of their mixtures with other substrates is limited, provoking their suboptimal usage. Therefore, we determined the water retention characteristics, including the available water capacity (AWC) of six geogenic CPMs: porlith, expanded shale, expanded clay, tuff, pumice, and lava. In order to obtain the water retention characteristics of the CPMs as well as of their mixture with sand (1:4 per volume), the following methods adapted from soil physics were applied over a wide range of pressure heads: Equi-pF apparatus, ceramic tension plates, pressure plate extractors, WP4C apparatus, and water vapor adsorption. The results were used to parametrize the modified Kosugi model (using SHYPFIT 2.0). Porlith and tuff have the highest AWC (0.37 m³ m^?3 and 0.17 m³ m^?3, respectively) and are the only ones which can be recommended as effective water-retaining materials. Further materials exhibit an AWC less than 0.10 m³ m^?3. The CPMs exhibit a bimodal pore size distribution, which can be well described by the applied model, except for pumice and expanded shale. The mixtures present overall low AWCs up to 0.07 m³ m^?3, with the pure sand having less than 0.03 m³ m^?3. For practical application a quite high ratio of CPM is needed, and the mixing material must be adapted to the hydraulic properties of the CPMs. The water inside the CPMs may be easily available for plant roots able to penetrate in the CPMs’ coarse pores.     

Separability of coffee leaf rust infection levels with machine learning methods at Sentinel-2 MSI spectral resolutions

Coffee leaf rust (CLR) caused by the fungus Hemileia vastarix is a devastating disease in almost all coffee producing countries and remote sensing approaches have the potential to monitor the disease. This study evaluated the potential of Sentinel-2 band settings for discriminating CLR infection levels at leaf levels. Field spectra were resampled to the band settings of the Sentinel-2, and evaluated using the random forest (RF) and partial least squares discriminant analysis (PLS-DA) algorithms with and without variable optimization. Using all variables, Sentinel-2 Multispectral Imager (MSI)-derived vegetation indices achieved higher overall accuracy of 76.2% when compared to 69.8% obtained using raw spectral bands. Using the RF out-of-bag (OOB) scores, 4 spectral bands and 7 vegetation indices were identified as important variables in CLR discrimination. Using the PLS-DA Variable Importance in Projection (VIP) score, 3 Sentinel-2 spectral bands (B4, B6 and B5) and 5 vegetation indices were found to be important variables. Use of the identified variables improved the CLR discrimination accuracies to 79.4 and 82.5% for spectral bands and indices respectively when discriminated with the RF. Discrimination accuracy slightly increased through variable optimization for PLS-DA using spectral bands (63.5%) and vegetation indices (71.4%). Overall, this study showed the potential of the Sentinel 2 MSI band settings for CLR discrimination as part of crop condition assessment. Nevertheless further studies are required under field conditions.     

Identification of two haplotypes of cytochrome oxidase subunit II (COII) gene of the Formosan subterranean termite,Coptotermes formosanus Shiraki (Isoptera: Rhinotermitidae), in southern Mississippi

BACKGROUND: Coptotermes formosanus Shiraki was accidentally introduced into the United States from Asia. The introduction of the pest has brought significant economic consequences. During the past decade, Mississippi has become a significantly infested state, partly due to the proximity to coastal port cities such as New Orleans. This study was initiated to investigate the origin and infestation route of C. formosanus in southern Mississippi. RESULTS: Twenty‐eight colonies (21 colonies from Mississippi, six from Louisiana, one from China) were collected. Sequencing and analysis of 112 sequences revealed 15 haplotypes of cytochrome oxidase subunit II (COII) gene in the world. Two haplotypes of COII were identified in Mississippi. In addition, specific primers were designed and tested differentially to amplify characteristic fragments for verifying and surveying different genotypes of C. formosanus in the future. CONCLUSION: Of the two haplotypes identified in Mississippi, the GA group was identical to those reported previously in Georgia, Louisiana, Alabama and other infested states. The second haplotype, the AT group, was identified for the first time in southeastern United States. Sequence identity of the AT‐group C. formosanus with those reported mainly in southeastern Asian countries provided evidence of at least two introductions of C. formosanus into the United States. Copyright © 2010 Society of Chemical Industry     

Preharvest calcium sprays improve volatile emission at commercial harvest of 'Fuji Kiku-8' apples

Apple (Malus × domestica Borkh.) fruit intended for long-term storage are frequently harvested commercially before becoming fully ripe, often resulting in poor aroma development. Since postharvest calcium dips have proved effective for the enhancement of flavor-related volatile esters after cold storage of apples, this study was undertaken in order to assess whether preharvest calcium sprays (7 weekly applications at 1.6%, w/v, 81-123 days after full bloom) could also aid in improving this important attribute at harvest. This procedure significantly increased calcium content in treated fruit. The emission of aroma-related volatile esters by untreated and calcium-treated 'Fuji' apples was then monitored during maturation and ripening over two months prior to commercial harvest. Results indicate that most of the compounds contributing to overall flavor in ripe fruit were enhanced in response to preharvest calcium applications, suggesting that this procedure may be suitable for the improvement of fruit aroma at harvest. The emission of acetate esters was particularly favored, consistent with higher acetaldehyde contents in treated fruit. These effects arose apparently from increased pyruvate decarboxylase (PDC) and alcohol dehydrogenase (ADH) activities, possibly leading to a better supply of alcohols and acyl CoAs for ester biosynthesis.     

Analyses of genetic diversity and population structure of anchote (Coccinia abyssinica (Lam.) Cogn.) using newly developed EST-SSR markers

Anchote (Coccinia abyssinica (Lam.) Cogn.) is a perennial root crop belonging to Cucurbitaceae family. It is endemic to Ethiopia and distributed over wide range of agro-ecologies. For further improvement and efficient conservation of this crop, characterization of its genetic diversity and its pattern of distribution is a vitally important step. Expressed sequence tags-simple sequence repeats (EST-SSRs) markers were developed from publicly available watermelon [Citrullus lanatus (Thunb.) Matsum. & Nakai] ESTs in the GenBank database. Among those novel markers, eight were polymorphic and subsequently used for genetic diversity and population structure analyses of 30 anchote accessions collected from western Ethiopia. A total of 24 alleles were obtained across the eight polymorphic loci and 30 accessions that revealed moderate level of genetic diversity in this minor crop. Among the eight loci, locus CA_06 was the most informative with six alleles and polymorphic information content (PIC) of 0.76. The accessions showed about threefold variation in terms of genetic diversity, with expected heterozygosity (He) ranging from 0.15 (accession An) to 0.44 (accession Dg). Other accessions with higher genetic diversity include Ar and Gu (He?=?0.43 and 0.41, respectively). Analysis of molecular variance (AMOVA) revealed that the variation within accessions and among accessions accounted for 84.7% and 15.3% of the total variation, respectively. The study revealed low but significant population differentiation in this crop with no clear pattern of population structure. The EST-SSR markers developed in this study are the first of their kind for anchote and can be used for characterization of its wider genetic resources for conservation and breeding purposes.

     

Metabolism of fungicidal cyanooximes, cymoxanil and analogues in various strains of Botrytis cinerea

BACKGROUND: The metabolism of cymoxanil [1‐(2‐cyano‐2‐methoxyiminoacetyl)‐3‐ethylurea] and fungicidal cyanooxime analogues was monitored on three phenotypes of Botrytis cinerea Pers. ex Fr. differing in their sensitivity towards cymoxanil. For this purpose, labelled [2‐¹⁴C]cymoxanil was added either to the culture medium of these strains or to its cell‐free extract. RESULTS: In the culture medium of the most sensitive strain, four main metabolites were detected. Three were isolated and identified. Cymoxanil was quickly metabolised by at least three concurrent enzymatic pathways: (i) cyclisation leading, after hydrolysis, to ethylparabanic acid, (ii) reduction giving demethoxylated cymoxanil, (iii) hydrolysis followed by reduction and then acetylation leading to N‐acetylcyanoglycine. In the cell‐free extract of the same strain, only the first and the second of these enzymatic reactions occurred. By comparing the metabolic profile of the most sensitive strain with that of the less sensitive ones, it was shown that the decrease in sensitivity to cymoxanil correlates with a reduced acetylcyanoglycine formation. Among all metabolites, only N‐acetylcyanoglycine is active against the most sensitive strain. Moreover, in a culture of this strain, two other fungicidal cyanooximes were also metabolised into this metabolite. CONCLUSION: The formation of N‐acetylcyanoglycine may play an important role in the fungitoxicity of cymoxanil and cyanooxime derivatives. Copyright © 2008 Society of Chemical Industry     

Wirkungen verseifter,veresterter und freier Fettsäuren auf die Entwicklung der Mikrobenpopulation in kontinuierlichen Kulturen sowie auf die Nährstoffverdaulichkeit und Futterpartikelpassage bei Schafen1

Es wurde untersucht, wie sich Zulagen Ca-verseifter (Ca-S), veresterter (TG) und freier ralmölfettsäuren (FPFS) auf pansenphysiologische und verdauungsphysiologische Parameter beim Wiederkäuer auswirken. Dazu dienten Untersuchungen mit Hilfe des Pansensimulationssystems “RUSITEC” und Stoffwechselversuche an ausgewachsenen Merinolandschafen. In den RUSITEC-Untersuchungen führten Fettzulagen von 6–11% in der Rations-TS bei Konstanthaltung des Futter- und Flüssigkeits-Turnovers zur Reduzierung der Protozoen in der Rangfolge Ca-S < TG < FPFS und zur Steigerung der Bakterienzahl in umgekehrter Rangfolge. Die durch Fettzulagen verursachte Verschiebung in der Mikrobenpopulation führte zu keiner Veränderung der NH₃-N-Fixation, Mikrobenmassesynthese und Abbaubarkeit der Gerüstsubstanzen. In einem 12-wöchigen Stoffwechselversuch an Schafen wurden einer Grundration 140 g (= 10% i. d. TS) der beschriebenen Fette zugelegt. Die Verdaulichkeit der Faserbestandteile wurde in der Rangfolge Ca-S < TG < FPFS gesenkt. Gleichzeitig stieg die Futterpartikelpassage im Pansen durch TG- und FPFS-Zulagen tendenziell an, während die renale Allantoin-N-Ausscheidung unbeeinflußt blieb. Aus diesen Ergebnissen wird geschlossen, daß sich Veränderungen in der mikrobiellen Populationszusammensetzung des Pansens in gleicher Weise wie in den Simulationsversuchen eingestellt haben. Die verwendeten Ca-verseiften Fettsäuren waren unter den RUSITEC-Inkubationsbedingungen trotz mehrtägiger Adaptationsperioden nicht stabil, ihre Stabilität im Pansen nahm jedoch zu, wenn die Tiere zuvor über mehrere Tage mit Ca-verseiften Fettsäuren gefüttert worden waren. Ob es sich hierbei um eine Besonderheit der eigens für diese Untersuchungen hergestellten Ca-Seife oder um ein generelles Problem beim Einsatz von Ca-verseiften Fettsäuren in der Wiederkäuerfütterung handelte, muß weiter geprüft werden.