Molecular analysis of the sex chromosomes of the platyfish Xiphophorus maculatus: Towards the identification of a new type of master sexual regulator in vertebrates

In contrast to mammals and birds, fish display an amazing diversity of genetic sex determination systems, with frequent changes during evolution possibly associated with the emergence of new sex chromosomes and sex‐determining genes. To better understand the molecular and evolutionary mechanisms driving this diversity, several fish models are studied in parallel. Besides the medaka (Oryzias latipes Temminck and Schlegel, 1846) for which the master sex‐determination gene has been identified, one of the most advanced models for studying sex determination is the Southern platyfish (Xiphophorus maculatus, Günther 1966). Xiphophorus maculatus belongs to the Poeciliids, a family of live‐bearing freshwater fish, including platyfish, swordtails and guppies that perfectly illustrates the diversity of genetic sex‐determination mechanisms observed in teleosts. For X. maculatus, bacterial artificial chromosome contigs covering the sex‐determination region of the X and Y sex chromosomes have been constructed. Initial molecular analysis demonstrated that the sex‐determination region is very unstable and frequently undergoes duplications, deletions, inversions and other rearrangements. Eleven gene candidates linked to the master sex‐determining gene have been identified, some of them corresponding to pseudogenes. All putative genes are present on both the X and the Y chromosomes, suggesting a poor degree of differentiation and a young evolutionary age for platyfish sex chromosomes. When compared with other fish and tetrapod genomes, syntenies were detected only with autosomes. This observation supports an independent origin of sex chromosomes, not only in different vertebrate lineages but also between different fish species.     

Enhanced tomato resistance to bacterial canker by application of turtle oil

Pretreatment with oil of sea turtle Caretta caretta protected tomato plants against bacterial canker caused by Clavibacter michiganensis subsp. michiganensis (Cmm). The turtle oil was ineffective in inhibiting Cmm in an agar diffusion test, suggesting a mechanism of induced resistance. Under controlled conditions in the greenhouse, turtle oil lowered the disease index and had reduced the growth of bacteria up to 50.4% by 7 days after inoculation. Applying turtle oil to the foliage of tomato plants increased per-oxidase and lipoxygenase activities. Gas chromatography analyses of turtle oil indicated the presence of polyunsaturated fatty acids such as eicosapentaenoic acid and docosahexaenoic acid. These fatty acids may lead to the higher activity of the enzymes and probably induced plant resistance against the pathogen.     

Improving dynamic treatment unit forest planning with cellular automata heuristics

We present a model for conducting dynamic treatment unit (DTU) forest planning using a heuristic cellular automata (CA) approach. The clustering of DTUs is driven by entry costs associated with treatments, thus we directly model the economic incentive to cluster. The model is based on the work presented in the literature but enhanced by adding a third phase to the CA algorithm where DTUs are mapped in high detail. The model allows separate but nearby forest areas to be included in the same DTU and shares the entry cost if they are within a defined distance. The model is applied to a typical long-term forest planning problem for a 1 182 ha landscape in northern Sweden, represented by 4 218 microsegments with an average size of 0.28 ha. The added phase increased the utility by 1.5–32.2%. The model produced consistent solutions—more than half of all microsegments were managed with the same treatment program in 95% of all solutions when multiple solutions were found.

     

Determining phenological and genetic variation in genotypes obtained from open-pollinated seeds of ‘Maraş 12’ walnut (Juglans regia L.) cultivar

Genetic Resources and Crop Evolution - In the present study, the phenological and genetic differences/similarities of 95 walnut genotypes were considered. These genotypes had been propagated...     

Impacts of different forest management scenarios on forestry and reindeer husbandry

In northern Sweden, the forests are used simultaneously for both timber production and reindeer husbandry. During the winter months, lichen is the most important fodder for reindeer. Forest management operations are generally considered having a negative impact on reindeer husbandry as harvesting and dense stands remove or obscure the ground lichen cover. In this study, we simulate three different scenarios for forest management, differing in the intensity and types of harvest operations. The resulting 100-year scenarios are analyzed with respect to their estimated suitability for providing reindeer pasture areas. Suitability is determined by vegetation type, stand density and stand height. The results indicate that the current trend of a decrease in lichen area will continue if existing forestry practice prevails. Implementing continuous cover forestry as a management alternative and carrying out precommercial thinning could halt the decrease in reindeer pasture area and even lead to a future increase in pasture area, with losses of approximately 5% in the net present value of forestry.     

Role of lipid oxidation, chelating agents, and antioxidants in metallic flavor development in the oral cavity

This study investigated the production of metallic flavor, which is a combination of taste and retronasal odor. Chemical reactions in the oral cavity and saliva of healthy subjects were investigated after ingesting iron and copper solutions above and near threshold levels. Significant increase in lipid oxidation (p < 0.001) occurred after metal ingestion, detected as TBARS values. Ferrous ion caused the greatest flavor sensation and lipid oxidation, followed by cupric and cuprous ions. Ferric ion did not cause metallic sensation. Occurrence of oxidation was supported by damage to salivary proteins, detected as protein-carbonyls, and by a significant increase of odorous lipid oxidation related aldehydes. Sensory evaluation demonstrated that antioxidants (vitamins E and C) minimally reduced metallic flavor but that chelating agents (EDTA and lactoferrin) removed the metallic flavor. The role of lipid oxidation is essential for the production of a metallic flavor from ingestion of ferrous, cupric, and cuprous ions.     

Effects of Sowing Dates and Seeding Rates on Nitrogen and Water Use Efficiency of Facultative Wheat

In this study, effects of different sowing dates and seeding rates on N uptake efficiency (NUE), N translocation efficiency (NTE), agronomic efficiency (AE), physiological efficiency (PE), water use efficiency for grain yield (WUE_g) and water use efficiency for biomass (WUE_b) of facultative wheat were investigated. As the average of cropping year, sowing dates and seeding rates, N uptake efficiency (NUE), N translocation efficiency (NTE), agronomic efficiency (AE), physiological efficiency (PE), water use efficiency for grain yield (WUE_g) and water use efficiency for biomass (WUE_b) values were respectively obtained as 1.17?kg N_uptake/kg N_applied, 68.5%, 36.9?kg grain/kg N_applied, 31.2?kg grain/kg N_uptake, 5.19?kg ha^?1 mm^?1 and 18.04?kg ha^?1 mm^?1.

Nitrogen and water use efficiencies decreased with delayed sowing dates and increased with increasing seeding rates. It is possible to maintain a high wheat yield, nitrogen and water use efficiency by increasing plant density through winter sowing. It was concluded based on present findings that sowing date and seeding rates had significant effects on nitrogen and water use efficiencies and winter sowing should be practiced as not to cause yield losses and high seeding rates (575 seeds m^?2) yielded greater nitrogen-water use efficiencies.

     

Stocktake study of current fertilisation recommendations across Europe and discussion towards a more harmonised approach

The European Commission has set targets for a reduction in nutrient losses by at least 50% and a reduction in fertiliser use by at least 20% by 2030 while ensuring no deterioration in soil fertility. Within the mandate of the European Joint Programme EJP Soil ‘Towards climate-smart sustainable management of agricultural soils’, the objective of this study was to assess current fertilisation practices across Europe and discuss the potential for harmonisation of fertilisation methodologies as a strategy to reduce nutrient loss and overall fertiliser use. A stocktake study of current methods of delivering fertilisation advice took place across 23 European countries. The stocktake was in the form of a questionnaire, comprising 46 questions. Information was gathered on a large range of factors, including soil analysis methods, along with soil, crop and climatic factors taken into consideration within fertilisation calculations. The questionnaire was completed by experts, who are involved in compiling fertilisation recommendations within their country. Substantial differences exist in the content, format and delivery of fertilisation guidelines across Europe. The barriers, constraints and potential benefits of a harmonised approach to fertilisation across Europe are discussed. The general consensus from all participating countries was that harmonisation of fertilisation guidelines should be increased, but it was unclear in what format this could be achieved. Shared learning in the delivery and format of fertilisation guidelines and mechanisms to adhere to environmental legislation were viewed as being beneficial. However, it would be very difficult, if not impossible, to harmonise all soil test data and fertilisation methodologies at EU level due to diverse soil types and agro-ecosystem influences. Nevertheless, increased future collaboration, especially between neighbouring countries within the same environmental zone, was seen as potentially very beneficial. This study is unique in providing current detail on fertilisation practices across European countries in a side-by-side comparison. The gathered data can provide a baseline for the development of scientifically based EU policy targets for nutrient loss and soil fertility evaluation.