Role of histone H3 lysine 27 methylation in X inactivation

The Polycomb group (PcG) protein Eed is implicated in regulation of imprinted X-chromosome inactivation in extraembryonic cells but not of random X inactivation in embryonic cells. The Drosophila homolog of the Eed-Ezh2 PcG protein complex achieves gene silencing through methylation of histone H3 on lysine 27 (H3-K27), which suggests a role for H3-K27 methylation in imprinted X inactivation. Here we demonstrate that transient recruitment of the Eed-Ezh2 complex to the inactive X chromosome (Xi) occurs during initiation of X inactivation in both extraembryonic and embryonic cells and is accompanied by H3-K27 methylation. Recruitment of the complex and methylation on the Xi depend on Xist RNA but are independent of its silencing function. Together, our results suggest a role for Eed-Ezh2-mediated H3-K27 methylation during initiation of both imprinted and random X inactivation and demonstrate that H3-K27 methylation is not sufficient for silencing of the Xi.     

Spring wheat response to timing of water deficit through sink and grain filling capacity

Water and nitrogen (N) availability are the main factors influencing crop growth globally. Poorly distributed or insufficient water for crop growth requirements decreases yields in drought-prone areas such as those with a Mediterranean type environment. Cereal grain yield is a complex trait of interrelated components: plants per unit land area, spikes per plant, spikelets per spike, grains per spikelet, and single grain weight (SGW). The effect of water limitation and timing on development of yield components was studied in detail at the spike level in spring wheat (Triticum aestivum L.) cultivar Amaretto. An experiment with three watering treatments (control watering, CONT; drought prior to pollination, DR1 and terminal drought, DR2) was arranged in a large greenhouse (20 m × 30 m), with the use of standard field-trial machinery. Automated blackout curtains were used to control day length, which was set to correspond to that at 40°N. With watering treatments, two N application rates (60 and 120 kg N ha⁻¹) were used to investigate the N effect and potential watering × N interaction on yield formation and realisation. The water deficit effect exceeded the effect of N on fertile floret and grain number and SGW. DR1 strongly reduced the number of fertile florets and grains, whereas terminal drought reduced the number of grains per spike. Resuming the watering at pollination markedly enhanced photosynthesis, and hence grain filling capacity, resulting in the highest SGW in DR1. Enhancement in availability of key resources was associated with reduced rate of fertile floret and grain abortion, which resulted in higher grain to fertile floret ratio in DR1. Spikelets in the mid-section of the spike dominated yield formation in all treatments. In DR1 this was especially emphasised as 53% of the grain yield was produced in spikelets 4–6, whereas in DR2 and CONT this was 45 and 41%, respectively. Grains in proximal position in the spikelets produced about 80% of the spike grain yield, the proportion being slightly higher in stressed plants and plants receiving 60 kg N. No marked N × water deficit treatment interaction occurred for any of the measured parameters.     

Pomological and Nutraceutical Properties in Apricot Fruit: Cultivation Systems and Cold Storage Fruit Management

We have investigated the effect of cultivation systems and fruit post-harvest management on the antioxidant properties of apricot fruits. Trees of five cultivars ‘Tyrinthos’, ‘Cafona’, ‘Bella d’Italia’, ‘Vitillo’ and ‘Pellecchiella’ were cultivated under integrated and organic systems. Fruits were collected at full maturity stage and analyzed either immediately or after storage at 4±0.5 °C and 85% of relative humidity for seven and 14 days. The main pomological traits (weight, colour, flesh firmness, total soluble sugars, titratable acidity) and antioxidant properties were analyzed. The total antioxidant capacity (TAC by TEAC method), total phenols content (TP by Folin-Ciocalteu method) and carotenoid content by HPLC-DAD were monitored. Cultivar characterization by principal component analysis (PCA) indicated a large variability on pomological and antioxidant properties of apricot fruits. ‘Bella d’Italia’ showed better TAC and TP values compared to the other cultivars. ANOVA interactions between cultivar and cultivation system (organic/integrated) were found for the antioxidant properties. These interactions may help to select a set of genotypes with better performances under organic system, which in our study might be indicated in ‘Cafona’ and ‘Bella d’Italia’.     

Diversity and Biosynthetic Potential of Culturable Microbes Associated with Toxic Marine Animals

Tetrodotoxin (TTX) is a neurotoxin that has been reported from taxonomically diverse organisms across 14 different phyla. The biogenic origin of tetrodotoxin is still disputed, however, TTX biosynthesis by host-associated bacteria has been reported. An investigation into the culturable microbial populations from the TTX-associated blue-ringed octopus Hapalochlaena sp. and sea slug Pleurobranchaea maculata revealed a surprisingly high microbial diversity. Although TTX was not detected among the cultured isolates, PCR screening identifiedsome natural product biosynthesis genes putatively involved in its assembly. This study is the first to report on the microbial diversity of culturable communities from H. maculosa and P. maculata and common natural product biosynthesis genes from their microbiota. We also reassess the production of TTX reported from three bacterial strains isolated from the TTX-containing gastropod Nassarius semiplicatus.     

Leaf traits and tree rings suggest different water-use and carbon assimilation strategies by two co-occurring Quercus species in a Mediterranean mixed-forest stand in Tuscany, Italy

We compared the water-use characteristics of co-occurring mature Quercus cerris L. and Quercus pubescens Willd. trees growing in resource-limited (mainly water) hilly habitats in Tuscany, Italy. The species differed in their distribution along soil water gradients and in their access to, and use of, water, even though the study year was wetter than average, though with a summer drought. Compared with Q. cerris, Q. pubescens had greater access to soil water (less negative predawn water potentials) and a more conservative water-use strategy based on its relatively low stomatal conductance, high instantaneous water-use efficiency, less negative midday water potential and high soil-to-leaf hydraulic conductance. Quercus cerris had less conservative water-use characteristics than Q. pubescens, exhibiting relatively high stomatal conductance, low instantaneous water-use efficiency, more negative midday water potentials and low soil-to-leaf hydraulic conductance; however, Q. cerris had higher photosynthetic rates than Q. pubescens. Photosynthesis and stomatal conductance were positively correlated in both species. Although a strong correlation between ring widths and precipitation patterns was not found, some dry periods influenced ring-width growth. Quercus pubescens has always grown faster than Q. cerris, probably because of more efficient water use, although stand dynamics (driven by exogenous disturbance factors, including coppicing, browsing and competition) cannot be excluded. Ring-width variability, as well as tree-ring growth in dry years, which should be unaffected by stand dynamics, were higher in Q. pubescens than in Q. cerris. Moreover, Q. pubescens recovered completely after the drought in the seventies, even showing higher tree-ring growth than in the recent past, whereas Q. cerris showed a minor growth decline followed by a recovery to values comparable with those observed before the 1970s drought. Beginning in the early eighties, tree-ring growth decreased in both species, though Q. pubescens showed consistently higher values than Q. cerris. These differences can be explained by differences in water-use efficiency. Despite differences between the species in water use and water status, the results are consistent with the interpretation that both are drought tolerant, but that Q. pubescens is at an advantage on xeric ridges because of its greater ability to access soil water and use it more conservatively compared with Q. cerris.     

Monoclonal antibodies to equine CD23 identify the low-affinity receptor for IgE on subpopulations of IgM+ and IgG1+ B-cells in horses

CD23, also called FcεRII, is the low-affinity receptor for IgE and has first been described as a major receptor regulating IgE responses. In addition, CD23 also binds to CD21, integrins and MHC class II molecules and thus has a much wider functional role in immune regulation ranging from involvement in antigen-presentation to multiple cytokine-like functions of soluble CD23. The role of CD23 during immune responses of the horse is less well understood. Here, we expressed equine CD23 in mammalian cells using a novel IL-4 expression system. Expression resulted in high yield of recombinant IL-4/CD23 fusion protein which was purified and used for the generation of monoclonal antibodies (mAbs) to equine CD23. Seven anti-CD23 mAbs were further characterized. The expression of the low-affinity IgE receptor on equine peripheral blood mononuclear cells was analyzed by flow cytometric analysis. Cell surface staining showed that CD23 is mainly expressed by a subpopulation of equine B-cells. Only a very few equine T-cells or monocytes expressed CD23. CD23(+) B-cells were either IgM(+) or IgG1(+) cells. All CD23(+) cells were also positive for cell surface IgE staining suggesting in vivo IgE binding by the receptor. Two of the CD23 mAbs detected either the complete extracellular region of CD23 or a 22kDa cleavage product of CD23 by Western blotting. The new anti-CD23 mAbs provide valuable reagents to further analyze the roles of CD23 during immune responses of the horse in health and disease.     

Spatial distribution of saplings in heavily worn urban forests: Implications for regeneration and management

We studied the spatial distribution of saplings in the vicinity of other saplings and mature trees in heavily worn urban forests. Our aim was to identify favorable microsites for saplings to regenerate under different levels of wear. We hypothesized that these safe microsites were situated close to tree trunks that might offer shelter from trampling caused by humans and their pet dogs. The distribution of saplings was explored at 0.1–0.6 m to the nearest sapling and 0.1–2 m to the nearest mature tree. Sorbus aucuparia was the most abundant sapling species, followed by Populus tremula, Betula pubescens and Picea abies. These species all tended to cluster with their conspecific saplings and were generally randomly distributed with respect to mature trees. Saplings of S. aucuparia and P. tremula favored growing close to mature P. abies (already at 0.4–0.8 up to 2 m from the trunk base, respectively) and S. aucuparia trees (at 0.2–0.4 m up to 2 m). Betula sp. and Acer platanoides grew close to Pinus sylvestris trees. Furthermore, with increased levels of wear, saplings clustered more likely together and close to tree trunks. The results are contrary to the gap regeneration hypothesis known from rural unworn forests where saplings often grow in canopy gaps. We suggest the idea of a ‘sheltering group’, i.e. tree groups and thickets of densely growing conspecific saplings, for the maintenance of regeneration of saplings and other vegetation in heavily worn recreational forests. Since urban forestry may strongly affect the existence and spatial location of a high variety of microhabitats, small-scale spatial exploration is needed to identify microsites that offer opportunities for natural regeneration under heavy recreational use. To maintain natural regeneration and the survival of saplings in worn urban forests, we recommend microhabitat-level species-specific forest management.     

Architecture of succinate dehydrogenase and reactive oxygen species generation

The structure of Escherichia coli succinate dehydrogenase (SQR), analogous to the mitochondrial respiratory complex II, has been determined, revealing the electron transport pathway from the electron donor, succinate, to the terminal electron acceptor, ubiquinone. It was found that the SQR redox centers are arranged in a manner that aids the prevention of reactive oxygen species (ROS) formation at the flavin adenine dinucleotide. This is likely to be the main reason SQR is expressed during aerobic respiration rather than the related enzyme fumarate reductase, which produces high levels of ROS. Furthermore, symptoms of genetic disorders associated with mitochondrial SQR mutations may be a result of ROS formation resulting from impaired electron transport in the enzyme.     

Ecosystem‐based fisheries management: A perspective on the critique and development of the concept

The concept of ecosystem‐based fisheries management (EBFM) has been subjected to debate since it was introduced in the late 1990s. The development of the concept seems to follow two separate but simultaneous trajectories of increased popularity but also sustained critique. This paper offers an analysis of potential mechanisms behind these disparate trajectories by drawing on a theoretical framework from science and technology studies (STS) centred around "black box" and actor‐network theory. To support our analysis, we perform an exploratory literature review of how the EBFM concept has been used in a selection of high impact fisheries research papers. We find that the popularity of EBFM does not guarantee its integrity, usefulness or analytical insight, but also that persistent critique of how the concept is used seems to be driving some change. We think that a continued trajectory of increased understanding, contextualization and discernibility of EBFM can help overcome the considerable ambiguity associated with the concept and make it increasingly useful to fisheries management. This means moving away from routine use of the term towards a practicable and tangible approach to improve fisheries sustainability.     

Are circle hooks effective in reducing incidental captures of loggerhead sea turtles in a Mediterranean longline fishery?

• 1. A known fishing hot spot for loggerhead sea turtles (Caretta caretta) in the Mediterranean Sea is in the waters of the Strait of Sicily where interactions with fish hooks and branchlines are believed to be a major cause of mortality for sea turtles.
• 2. Hooks with different shapes but a similar gape width (circle hook size 16/0 vs J hook size 2) were tested in order to determine the potential effectiveness of the hook design to both reduce sea turtle capture as well as to maintain acceptable levels of target species capture rates in a shallow‐set longline swordfish fishery in the Mediterranean.
• 3. Seven experimental fishing trips, 30 000 hooks total, were conducted on a single commercial fishing vessel (18 m in length) in the Strait of Sicily during the months of July through October over a period of three years from 2005 to 2007. Circle and J hooks were alternated along the mainline.
• 4. A total of 26 sea turtles were hooked, all immature‐size Caretta caretta. Turtles were caught at a statistically greater frequency on J hooks than on circle hooks. The capture rate, weight, and upper jaw fork length of the target species were not significantly different between the two types of hooks employed.
• 5. Five sea turtles swallowed the hook and in all such cases these were J type. Circle hooks tended to be located externally and were more easily detected by fishermen, and could be removed with the correct dehooking action before returning the turtle to the sea.
• 6. These findings suggest that 16/0 circle hooks can effectively reduce the incidental capture of immature loggerhead sea turtles in a Mediterranean swordfish longline fishery without affecting the catch size of the target species.

Copyright © 2009 John Wiley & Sons, Ltd.