一种基于聚合酶链式反应检测SNP的方法

SNP是具有广泛利用潜力的第3代分子标记,本文旨在开发一种利用PCR技术快速检测SNP的方法。设计思路是:根据已知SNP位点设计2条特异正向引物,其最后一个碱基分别与已知SNP的2个碱基相同,同时在1条引物的5′端添加1段20 bp左右的其他物种的特异序列(如细菌DNA序列),然后选择1条合适的反向引物;最后同时加入3条引物,通过梯度PCR选择合适的退火温度进行PCR反应。利用这一方法成功将玉米的ZDS基因定位在玉米第7染色体短臂7.02 Bin。这种检测SNP的方法设计简单,费用低廉,尤其适合SNP标记的分子标记连锁图构建或者基因定位。     

Ultrastructure of potato tubers infected with potato virus X

The ultrastructure of Katahdin tubers infected with potato virus X (PVX) is compared with PVX-free tubers by electron microscopy. Electron-dense globules surrounding the inner periphery of the tonoplast were observed in PVX-infected tubers, while PVX-free tubers did not show such bodies. Other organelles were comparable in PVX-infected and PVX-free tubers     

Insulin Secretagogue,Alpha-glucosidase and Antioxidant Activity of Some Selected Spices in Streptozotocin-induced Diabetic Rats

Spices are extensively used to enhance the taste and flavor of foods and are known to possess several medicinal properties. Myristica fragrans, Parmelia perlata, Illicium verum, Trachyspermum copticum and Myristica malabarica, the commonly used spices in India were assessed for antidiabetic activity in streptozotocin induced diabetic rats. In the in vitro insulin secretion studies on isolated islets of Langerhans, M. fragrans, T. copticum and M. malabarica showed dose dependent insulin secretion. At 1 mg/ml, P. perlata showed significant in vitro alpha-glucosidase inhibitory activity with IC₅₀ value of 0.14 mg/ml followed by M. malabarica (0.64 mg/ml), I. verum (0.67 mg/ml), M. fragrans (0.85 mg/ml) and T. copticum (0.92 mg/ml). The DPPH free radical scavenging activity of the extracts at a concentration of 1 mg/ml was as M. malabarica (90.45%), M. fragrans (89.89%), I. verum (87.22%), P. perlata (76.70%) and T. copticum (38.14%). P. perlata showed the highest phenolic content (i.e., 118.5 mg gallic acid equivalents/g) followed by M. malabarica (84.13 mg gallic acid equivalents/g). M. malabarica showed the highest flavonoid content (i.e., 38.35 mg quercetin equivalents/g). Regular use of these spices may prevent postprandial rise in glucose levels through inhibition of intestinal alpha-glucosidase and may maintain blood glucose level through insulin secretagogue action.     

Quality of potato tubers as affected by freezing: I. texture,ascorbic acid and enzymatic discoloration

The effect of freezing on the turgor, ascorbic acid content and enzymatic discoloration of Katahdin and Atlantic potatoes was studied. Tubers were exposed to a temperature of ?20°C for 24 hrs. then thawed for 1 hr. at 20°C before analysis. Frozen tubers were then compared with unfrozen controls. Both varieties lost turgor following freezing and exuded a sticky liquid with increased thawing time. At the end of 3 hrs. thawing, a sponge-like texture was observed in both varieties. In both varieties freezing resulted in a significant reduction (p<.01) in ascorbic acid and phenolic content (p<.01). Enzymatic discoloration was also significantly reduced (p<.01) in both varieties.     

Host range of Alternaria alternata—a potential fungal biocontrol agents for waterhyacinth in India

The host ranges of Alternaria alternata and fungi native to India and pathogen of waterhyacinth (Eichhornia crassipes) were evaluated using 29 plant species (some with several cultivars tested) representing 18 families of economic and ecological importance. The results showed that only waterlettuce (Pistia stratiotes), another common weed in India, was infected by A. alternata. The use of these pathogens in the biological control of waterhyacinth would not be expected to affect plants of economic and ecological importance in India.     

Seed longevity studies in wild type,cultivated and inter-specific recombinant inbred lines (RILs) of soybean [Glycine max (L.) Merr.]

Genetic Resources and Crop Evolution - Loss of seed viability is a serious hurdle in production and ambient seed storage of soybean. Understanding the factors affecting seed viability,&nbsp;and...     

Guar genes to genome and meta-analysis of SSR markers in sequencing studies

Genetic Resources and Crop Evolution - Guar (Cyamopsis tetragonoloba (L.) Taub.), or cluster bean, traditionally grown for vegetable and fodder, has gained commercial importance across the globe...     

Content, composition, and bioactivity of the essential oils of three basil genotypes as a function of harvesting

A study was conducted to evaluate the effect of cut on biomass productivity, oil content, composition, and bioactivity of Ocimum basilicum L. (cvs. German and Mesten) and Ocimum sanctum L. (syn. O. tenuiflorum L.) (cv. Local) in Mississippi. Yields of basil herbage and essential oil were high and comparable to those reported in the literature. Essential oil content of O. basilicum cv. German varied from 0.40 to 0.75%, the oil content of cv. Mesten varied from 0.50 to 0.72%, and the oil content of cv. Local (of O. sanctum) ranged from 0.17 to 0.50% in air-dried basil. Herbage and essential oil yields of cvs. German and Mesten of O. basilicum increased with the second and then again with the third cut, whereas herbage and oil yields of cv. Local of O. sanctum increased with the third cut relative to the previous cuts. Overall, essential oil yields were 115, 123, and 51 kg/ha for the cvs. German, Mesten, and Local, respectively. The major oil constituents of cvs. German and Mesten (of O. basilicum) were (-)-linalool (30-40%) and eugenol (8-30%), whereas the major oil constituents of cv. Local (of O. sanctum) were eugenol (8-43%) and methylchavicol (15-27%). Essential oils from both species grown in Mississippi showed in vitro activity against Leishmania donovani (IC50 = 37.3-49.6 microg/mL), which was comparable to the activity of commercial oil (IC50 = 40-50 microg/mL). Minor basil oil constituents (+)-delta-cadinene, 3-carene, alpha-humulene, citral, and (-)- trans-caryophyllene had antileishmanial activity, whereas other constituents were ineffective. None of the oil was cytotoxic to mammalian cells.     

A novel serine protease cryptolepain from Cryptolepis buchanani: purification and biochemical characterization

A novel protease is purified to homogeneity from the latex of a medicinally important plant Cryptolepis buchanani of family Apocynaceae (formerly Asclepiadaceae). The enzyme named cryptolepain has a molecular mass of 50.5 kDa. The isoelectric point and extinction coefficient (epsilon280nm1%) are 6.0 and 26.4, respectively. Cryptolepain contains 15 tryptophans, 41 tyrosines, and eight cysteine residues forming four disulfide bridges. The detectable carbohydrate moiety in the enzyme was found to be 6-7%. Cryptolepain hydrolyzes denatured natural substrates like casein, azocasein, and azoalbumin with high specific activity. The protease is exclusively inhibited by serine protease inhibitors phenylmethansulfonyl fluoride and diisopropyl fluorophosphate. Hydrolysis of azoalbumin by the cryptolepain is optimal in the pH range of 8-10 and temperatures of 65-75 degrees C. The enzyme shows high stability against pH (2.5-11.5), temperature (up to 80 degrees C), and chemical denaturants. The Km value of the enzyme was found to be 10 microM with azocasein as the substrate. The N-terminal sequence of cryptolepain is unique and shows only little homology to other known serine proteases, which makes this enzyme an ideal candidate for our ongoing biochemical and structure-function investigations of proteases. Easy availability of the latex and simple purification procedures make the enzyme a good system for exploring the biophysical chemistry of serine proteases as well as applications in the food industry.     

Development of a simple and rapid monoclonal antibody-based flow through immunogold assay (FIA) for detection of <Emphasis Type="Italic">Aeromonas hydrophila</Emphasis>

In this study, we developed a simple, low-cost, and rapid flow through immunogold assay (FIA) for detection of Aeromonas hydrophila in fish tissues and validated. The developed assay relied on colloidal gold conjugated highly specific monoclonal antibody (B8E3) against 20 kDa protein of A. hydrophila. The assay can be completed within 5 min including antigen (sample) preparation and exhibited no cross-reaction with other major aquatic pathogens such as Vibrio anguillarum, V. parahaemolyticus, V. harveyi, white spot syndrome virus (WSSV), and Aphanomyces invadans. A wider range of Aeromonas species were tested including A. caviae, A. dhakensis, A. sobria, A. veronii, A. culicicola, A. sharmana, and A. schubertii and no cross-reactivity could be observed. The developed technique FIA could detect 10³ CFU/ml of aeromonad cells. In addition, the FIA is as sensitive as the first-step polymerase chain reaction (PCR) and 1000 times sensitive than the immunodot blot method. The validation study revealed the accuracy of FIA by comparing with the standard first-step PCR. The proposed FIA is low-cost, easy-to-use, and compatible for field-level analysis of A. hydrophila in fish tissues. Our developed FIA could successfully detect A. hydrophila at early stage of the infection and could be easily availed by farmers, fish producers, non-technicians, and technicians in the aquaculture industry.