Assessment of Genetic Diversity among Finger Millet (<Emphasis Type="Italic">Eleusine coracana</Emphasis> (L.) Gaertn.) Accessions using Molecular Markers

Finger millet (Eleusine coracana), an allotetraploid cereal, is widely cultivated in the arid and semiarid regions of the world. Being rich in protein and calcium, finger millet serves as an important staple food for rural populations in developing tropical countries where calcium deficiency and anemia are wide spread. Thirty-two finger millet genotypes were fingerprinted using 50 random amplified polymorphic DNA (RAPD) markers. Out of the total 529 loci generated using the 50 RAPD primers, 479 loci (91%) were polymorphic and informative to differentiate the accessions. Cluster analysis grouped the 32 finger millet accessions into two major clusters. Among the 32 finger millet genotypes, GEC 182 and CO 12 were distantly related with a low similarity index of 0.315. These two accessions also differed considerably in days to flowering and grain weight; GEC 182 is early flowering and has bold grains, while CO 12 is late flowering and has smaller grains. These two accessions with higher diversity at molecular level, phenology and grain weight will be ideal as parents in hybridization programme, to develop improved finger millet varieties suitable for peninsular region of India.     

A novel serine protease cryptolepain from Cryptolepis buchanani: purification and biochemical characterization

A novel protease is purified to homogeneity from the latex of a medicinally important plant Cryptolepis buchanani of family Apocynaceae (formerly Asclepiadaceae). The enzyme named cryptolepain has a molecular mass of 50.5 kDa. The isoelectric point and extinction coefficient (epsilon280nm1%) are 6.0 and 26.4, respectively. Cryptolepain contains 15 tryptophans, 41 tyrosines, and eight cysteine residues forming four disulfide bridges. The detectable carbohydrate moiety in the enzyme was found to be 6-7%. Cryptolepain hydrolyzes denatured natural substrates like casein, azocasein, and azoalbumin with high specific activity. The protease is exclusively inhibited by serine protease inhibitors phenylmethansulfonyl fluoride and diisopropyl fluorophosphate. Hydrolysis of azoalbumin by the cryptolepain is optimal in the pH range of 8-10 and temperatures of 65-75 degrees C. The enzyme shows high stability against pH (2.5-11.5), temperature (up to 80 degrees C), and chemical denaturants. The Km value of the enzyme was found to be 10 microM with azocasein as the substrate. The N-terminal sequence of cryptolepain is unique and shows only little homology to other known serine proteases, which makes this enzyme an ideal candidate for our ongoing biochemical and structure-function investigations of proteases. Easy availability of the latex and simple purification procedures make the enzyme a good system for exploring the biophysical chemistry of serine proteases as well as applications in the food industry.     

Declining wild salmon populations in relation to parasites from farm salmon

Rather than benefiting wild fish, industrial aquaculture may contribute to declines in ocean fisheries and ecosystems. Farm salmon are commonly infected with salmon lice (Lepeophtheirus salmonis), which are native ectoparasitic copepods. We show that recurrent louse infestations of wild juvenile pink salmon (Oncorhynchus gorbuscha), all associated with salmon farms, have depressed wild pink salmon populations and placed them on a trajectory toward rapid local extinction. The louse-induced mortality of pink salmon is commonly over 80% and exceeds previous fishing mortality. If outbreaks continue, then local extinction is certain, and a 99% collapse in pink salmon population abundance is expected in four salmon generations. These results suggest that salmon farms can cause parasite outbreaks that erode the capacity of a coastal ecosystem to support wild salmon populations.     

Anti-abortion and Fertility Vaccine Potential of Defined Double Deletion (ΔaroAΔhtrA) Mutant (S30) of Salmonella Abortusequi in Equids

The present study on defined double deletion (ΔaroAΔhtrA) mutant (S30) of Salmonella enterica serovar Abortusequi evaluated it for safety, immunogenicity, and efficacy as a vaccine candidate in equids. The candidate strain was found safe in equids (foals, male and female horses and donkeys, and pregnant and nonpregnant mares) and induced good humoral and cell-mediated immunity on administration through oral route. The strain was not excreted in feces of vaccinated animals. The vaccine candidate administered orally (1 × 10¹¹ cfu per animal) protected mares even after 180 days of inoculation against abortion on challenge with wild-type S. Abortusequi strain whereas in nonvaccinated control, all mares aborted. The vaccination in infertile mares resulted in regaining of fertility in 67%–80% thoroughbred mares at two different breeding farms. Further, the humoral immunity was transferred to foals from vaccinated mothers through colostrum, but no placental transfer was evident. Thus, the vaccine under study may be recommended for use in equids to control S. Abortusequi infection–associated abortions and also to enhance fertility of temporarily infertile mares in endemic areas.     

Guar genes to genome and meta-analysis of SSR markers in sequencing studies

Genetic Resources and Crop Evolution - Guar (Cyamopsis tetragonoloba (L.) Taub.), or cluster bean, traditionally grown for vegetable and fodder, has gained commercial importance across the globe...     

一种基于聚合酶链式反应检测SNP的方法

SNP是具有广泛利用潜力的第3代分子标记,本文旨在开发一种利用PCR技术快速检测SNP的方法。设计思路是:根据已知SNP位点设计2条特异正向引物,其最后一个碱基分别与已知SNP的2个碱基相同,同时在1条引物的5′端添加1段20 bp左右的其他物种的特异序列(如细菌DNA序列),然后选择1条合适的反向引物;最后同时加入3条引物,通过梯度PCR选择合适的退火温度进行PCR反应。利用这一方法成功将玉米的ZDS基因定位在玉米第7染色体短臂7.02 Bin。这种检测SNP的方法设计简单,费用低廉,尤其适合SNP标记的分子标记连锁图构建或者基因定位。     

Productivity,profitability and sustainability of rain-fed chickpea under inorganic and biofertilization in foothills of north-west Himalayas

A 4-year (2008–2009 to 2011–2012) study was conducted on the effect of mineral phosphorus (P) + sulphur (S) and biofertilizers on rain-fed chickpea (Cicer arietinum L.) at the Punjab Agricultural University’s Research Station, Ballowal Saunkhri, India. The experiment comprised of five combinations of P and S, viz. control (P₀S₀), no P + 10 kg S ha^?1 (P₀S₁₀), 15 kg P + 10 kg S ha^?1 (P₁₅S₁₀), no P + 20 kg S ha^?1 (P₀S₂₀) and 30 kg P + 20 kg S ha^?1 (P₃₀S₂₀); and three seed inoculation levels, viz. control, Rhizobium and phosphate-solubilizing bacteria (PSB), were laid out in randomized complete block design. Combined application of P + S resulted in improved growth, nodulation, yield attributes and yield. The increase in seed yield over control due to P + S ranged from 11.8% to 17.7%. Seed inoculation with Rhizobium recorded the highest growth, nodulation, yield attributes and yield of chickpea and was statistically at par with PSB and significantly better than no inoculation. Highest benefit/cost ratio (B:C, 2.19) was obtained in P₃₀S₂₀. In view of environmental pollution and high costs of chemical fertilizers, biofertilizers alone or in combination may help to achieve sustainable and ecological agricultural production.     

Growth and Development of Soybean (Glycine max [L.] Merr.) Cultivars under Shade in Coconut Garden

The growth and development of seven soybean cultivars were studied under shade in a coconut garden. Higher shoot height, internodal elongation and lower leaf area index were the most significant growth changes noticed under shade. Leaf net photosynthesis, crop growth rate and seed yield were also reduced under shade. The cultivars CO 1, UGM 30 and UGM 37 recorded higher yield under shade when compared to other cultivars tested.     

Identification of genomic regions linked to blast (Pyricularia grisea) resistance in pearl millet

Blast disease causes serious economic yield losses in pearl millet. Identification and introgression of genomic regions associated with blast resistance can help to develop resistant cultivars to minimize yield losses incurred from blast outbreaks. In this study, 384 advanced pearl millet genotypes were screened against six blast pathotype-isolates (major pearl millet growing agro-ecologies of India), namely, Pg 45, Pg 118, Pg 138, Pg 186, Pg 204 and Pg 232. Analysis of variance showed significant (P < .001) variation among genotypes for blast reaction (susceptible to resistance). ICMR 08111 and ICMR 10888 genotypes showed resistance to all six blast pathotypes. A genome-wide association study performed with 264,241 single nucleotide polymorphic markers could successfully identify 15 SNPs (P = 1.26 × 10⁻⁷ to 9.22 × 10⁻¹²) underlying the genomic regions governing blast-resistance across five different chromosomes. The SNPs reported had a significant association in at least two of the three models tested (GLM, MLM and Farm CPU). These SNPs can be used in pearl millet-resistant breeding programmes after their function has been validated across different genetic backgrounds.