Persistence of native fishes in small streams of the urbanized San Francisco Estuary,California: acknowledging the role of urban streams in native fish conservation

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The pelagic habitat analysis module for ecosystem‐based fisheries science and management

We have developed a set of tools that operate within an aquatic geographic information system to improve the accessibility, and usability of remote‐sensed satellite and computer‐modeled oceanographic data for marine science and ecosystem‐based management. The tools form the Pelagic Habitat Analysis Module (PHAM), which can be applied as a modeling platform, an investigative aid in scientific research, or utilized as a decision support system for marine ecological management. Applications include fisheries, marine biology, physical and biological oceanography, and marine spatial management. The GIS provides a home for diverse data types and automated tools for downloading remote sensed and global circulation model data. Within the GIS environment, PHAM provides a framework for seamless interactive four‐dimensional visualization, for matching between disparate data types, for flexible statistic or mechanistic model development, and for dynamic application of user developed models for habitat, density, and probability predictions. Here we describe PHAM in the context of ecosystem‐based fisheries management, and present results from case study projects which guided development. In the first, an analysis of the purse seine fishery for tropical tuna in the eastern Pacific Ocean revealed oceanographic drivers of the catch distribution and the influence of climate‐driven circulation patterns on the location of fishing grounds. To support management of the Common Thresher Shark (Alopias vulpinus) in the California Current Ecosystem, a simple empirical habitat utilization model was developed and used to dynamically predict the seasonal range expansion of common thresher shark based on oceanographic conditions.     

Evaluating the relationship between yearling walleye,Sander vitreus,electrofishing catch‐per‐unit‐effort and density in northern Wisconsin lakes

Recruitment declines of walleye, Sander vitreus (Mitchill), observed in some northern Wisconsin lakes have resulted in management actions to evaluate and rehabilitate populations. An effective index for estimating relative abundance of yearling walleye is required. The objectives herein were : (a) to evaluate the relationship between yearling walleye electrofishing CPUE and density in northern Wisconsin lakes; (b) to test for the influence of lake‐specific factors on electrofishing catchability of yearling walleye; and (c) to develop an index whereby electrofishing CPUE can be used to quantify yearling walleye relative abundance. Yearling density was significantly positively related to electrofishing CPUE on a long‐term dataset from Escanaba Lake as well as a dataset including several lakes combined. Electrofishing catchability of yearling walleye was negatively related to lake‐surface area but was not related to other lake‐specific variables. This index can provide an efficient method to continue monitoring natural recruitment and also to evaluate survival of stocked walleye.     

Yellow- and brown-seeded canola (Brassica napus), camelina (Camelina sativa) and Ethiopian mustard (Brassica carinata) in practical diets for rainbow trout fingerlings

Rainbow trout (initial body weight 2.5 ± 0.3 g; 30 fish/tank; 4 tanks/treatment) were offered either the control diet or one of four test diets. The test diets contained brown seed coat canola (BSC; Brassica napus), yellow seed coat canola (YSC; Brassica rapa), Brassica carinata (Ethiopian mustard; EM), or Camelina sativa (CAM), which were added to their respective diets at a 15% dietary inclusion level. Final weight of fish fed the control (101.0 g) was higher than that of fish fed BSC (80.7 g) and CAM (85.3 g) (P < 0.05). Fish fed the control also gained more weight (98.4g) than fish fed BSC (78.2 g) and CAM (83.0 g) (P < 0.05). Fish fed YSC and EM at a 15% dietary inclusion level had a final body weight and gain that was more similar to the control than fish fed BSC and CAM. Considering the fact that there was no significant difference among treatments for SGR and FCR for the entirety of the trial, all four oilseeds have potential for use in rainbow trout feeds.     

A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico

Methane was the most abundant hydrocarbon released during the 2010 Deepwater Horizon oil spill in the Gulf of Mexico. Beyond relevancy to this anthropogenic event, this methane release simulates a rapid and relatively short-term natural release from hydrates into deep water. Based on methane and oxygen distributions measured at 207 stations throughout the affected region, we find that within ~120 days from the onset of release ~3.0 × 10(10) to 3.9 × 10(10) moles of oxygen were respired, primarily by methanotrophs, and left behind a residual microbial community containing methanotrophic bacteria. We suggest that a vigorous deepwater bacterial bloom respired nearly all the released methane within this time, and that by analogy, large-scale releases of methane from hydrate in the deep ocean are likely to be met by a similarly rapid methanotrophic response.     

Excretion of BSE and scrapie prions in stools from murine models

Faeces from infected animals have been suggested as a potential source of contamination and transmission of prion diseases in the environment. This work describes the development of a procedure for the detection of PrP(res) in stools which is based on a detergent-based extraction and immunoprecipitation (IP). The procedure was evaluated by analyzing TSE-spiked sheep and mice faeces, and proved to be specific for PrP(res) with sensitivities of 5-10mug of infected brain tissue. In order to analyze the shedding of prions, we studied stools from orally inoculated mice over 4-days post-inoculation and also stools from terminally sick scrapie-infected mice. PrP(res) was only detected in stools shortly after the oral ingestion of TSE agents. The procedure described could be a useful tool for studying the excretion of prions and for evaluating potential environmental contamination by prions.     

Infection with Aleutian disease virus-like virus in a captive striped skunk

CASE DESCRIPTION: A 5-month-old captive female striped skunk (Mephitis mephitis) was evaluated because of lethargy, signs of depression, azotemia, and erythema of the skin around the eyes. CLINICAL FINDINGS: Antemortem diagnostic tests revealed renal disease but failed to identify an etiologic agent. A diagnosis of severe nonsuppurative interstitial nephritis was made on the basis of results of histologic examination of renal biopsy specimens. TREATMENT AND OUTCOME: The skunk was administered isotonic fluids SC daily and later every other day because of the handling-related stress. Because of the skunk's deteriorating condition, it was euthanized after 24 days of supportive care. Aleutian disease was diagnosed on the basis of positive results of a PCR assay that targeted the DNA from Aleutian disease virus (ADV); positive results for ADV were also obtained by use of plasma counterimmunoelectrophoresis and an ELISA. Genetic sequencing of the 365-base pair PCR product revealed 90% sequence identity with mink ADV. CLINICAL RELEVANCE: In the skunk of this report, infection with a skunk-specific parvovirus resulted in clinical signs and pathologic changes similar to those associated with ADV infection in mink. For skunks with signs of renal failure, differential diagnoses should include parvovirus infection. In confirmed cases of infection with this ADV-like virus, appropriate quarantine and biosecurity measures should be in place to prevent spread to other susceptible animals within a zoological collection.