Diversity in White Lupin (<Emphasis Type="Italic">Lupinus albus</Emphasis> L.) Landraces from Northwest Iberianplateau

All the accessions (35) of white lupin (Lupinus albus L.) landraces collected from northwest Iberian plateau and maintained at the Spanish germplasm collection (CRF of INIA), were studied with the general objective of assessing the biodiversity of these landraces and to ascertain their value as genetic resources for the development of germplasm adapted to the areas where they were collected with long and chilly winters. The characterization study comprised 51 qualitative and 50 quantitative characters. Quantitative parameters were analyzed by Principal Components Analysis (PCA). The 2-dimensional plot (49.3% of cumulative variability) formed a main group of accessions and 4 outliers (#1, #9, #27 and #28) separated in the first PC. The characters with a higher contribution to the first PC were inflorescence length, leaf petiole length and leaf central foliole area. The presence of alkaloids, the percentage of plants killed by soil borne fungal diseases, the phenology, the yield per plant and yield components were also assessed. Twenty six accessions (the main group in the PCA plot) showed high homogeneity, with the following highlights: bitterness, indeterminate growth habit, early ripeness and spring sowing with the exception of #18, in which seeding date is unknown and it had a later phenology. By contrast accessions #9 and #27 were bitter of autumn sowing with determinate growing habit and they had the longest values of primary inflorescence length and a later phenology when they were sown in spring. Average values for yield and yield components showed a broad range of variation between accessions. The main yield component was the number of pods per plant. Accession #22 had the highest mean seed mass, although this had not significant influence in yield. Accession #17 showed the highest yield and #1 the lowest. This last also had the lowest values of inflorescence length, leaf petiole length and leaf central foliole area. No significant differences of resistance to soil-borne fungi were found between accessions. The year had a significant effect in the phenology, yield and yield components except for number of seeds per pod. The studied material might be of interest for the development of spring sowing germplasm adapted to north Iberian peninsula.     

Evidence of Lower Productivity in Long Term Limed Lakes as Compared to Unlimed Lakes of Similar pH

Ecosystem development in lime-treated waters in Sweden has been followed since 1989 in a programme for integrated studies of the effects of liming acidified waters (ISELAW). Observations after prolonged liming (>10 y) indicate a phosphorus depletion in the limed lakes which contrasts to the increased phosphorus supply often following within the initial years after lime treatment. After prolonged liming, the levels of total phosphorus are lower as compared to neutral reference lakes at identical TOC, and the phosphorus/TOC -ratio is consequently lower in limed lakes. Depletion of dissolved inorganic nitrogen during the summer is also lower in limed as compared to neutral reference lakes. Phytoplankton biomass and species number also lower in the limed lakes as compared to unlimed neutral references. Furthermore the bacterial number per unit TOC is lower in the long term limed lakes, possibly as a result of phosphorus limitation. As to the higher trophic levels, the benthic soft-bottom fauna of limed lakes (specifically the sublittoral fauna) is poorer in terms of species diversity and abundance. Also fish community composition indicates lower productivity in the limed lakes. Taken together there is thus evidence that the long term limed lakes have a lower trophic level than reference lakes.     

Evaluating estimators of the numbers of females with cubs-of-the-year in the yellowstone grizzly bear population

Current management of the grizzly bear (Ursus arctos) population in Yellowstone National Park and surrounding areas requires annual estimation of the number of adult female bears with cubs-of-the-year. We examined the performance of nine estimators of population size via simulation. Data were simulated using two methods for different combinations of population size, sample size, and coefficient of variation of individual sighting probabilities. We show that the coefficient of variation does not, by itself, adequately describe the effects of capture heterogeneity, because two different distributions of capture probabilities can have the same coefficient of variation. All estimators produced biased estimates of population size with bias decreasing as effort in creased. Based on the simulation results we recommend the Chao estimator for model M _h be used to estimate the number of the female bears with cubs of the year; however, the estimator of Chao and Shen may also be useful depending on the goals of the research.     

The simultaneous analysis of mixed discrete and continuous outcomes using nonlinear threshold models

Mixed discrete and continuous outcomes are commonly measured on each experimental unit in dose-response studies in toxicology. The dose-response relationships for these outcomes often have dose thresholds and nonlinear patterns. In addition, the endpoints are typically correlated, and a statistical analysis that incorporates the association may result in improved precision. We propose an extension of the generalized estimating equation (GEE) methodology to simultaneously analyze binary, count, and continuous outcomes with nonlinear threshold models that incorporates the intra-subject correlation. The methodology uses a quasi-likelihood framework and a working correlation matrix, and is appropriate when the marginal expectation of each outcome is of primary interest and the correlation between endpoints is a nuisance parameter. Because the derivatives of threshold models are not continuous at each point of the parameter space, we describe the necessary modifications that result in asymptotically normal and consistent estimators. Using dose-response data from a neurotoxicity experiment, the methodology is illustrated by analyzing five outcomes of mixed type with nonlinear threshold models. In this example, the incorporation of the intra-subject correlation resulted in decreased standard errors for the threshold parameters.     

Effects of nitrogen fertilizer application rates on nitrate nitrogen distribution in saline soil in the Hai River Basin,China

Background and Objectives  

Soil nitrate nitrogen (NO₃ ⁻-N) accumulation is related closely to NO₃ ⁻ leaching, which is an important issue in groundwater pollution, especially in intensive agricultural areas with saline soils where volumes of water are used in irrigation to avoid salt accumulation in the root zone. However, in the saline environment in Hai River Basin, China, the importance of detailed research into NO₃ ⁻-N distribution in the root zone has not been adequately recognized. Considering the impacts of eco-environmental system N and crop production, the present study aimed at contributing to an understanding of the effects of N application rate on soil NO₃ ⁻-N distribution, NO₃ ⁻-N residue, N loss, and maize (Zea mays L.) yield in this region.     

Large-sample hypothesis tests for stratified group-testing data

Insect-vectored plant diseases impact the agricultural community each year by affecting the economic value, the quantity, and the quality of crops. Controlling the spread of disease is an important area in risk assessment, and understanding the dynamics of vector populations helps researchers to develop effective treatments. In this article, we consider an experimental design commonly used by researchers who study plant disease and examine large-sample, likelihood-based hypothesis tests that can be used to characterize disease-transmission behavior in a stratified population. Small-sample size and power results along with design considerations are provided. We illustrate our testing procedures using two real data examples and provide recommendations for plant-disease researchers in the field.     

Growth and reproduction of the vermicomposting earthwormPerionyx excavatus as influenced by food materials

An outdoor study was undertaken using polyethylene containers to assess the suitability of different organic residues, soybean straw (Glycine max L. Merril.), wheat straw (Triticum aestivum L.), maize stover (Zea mays L.), chickpea straw (citer arietinum L.) and city garbage, as food for the tropical epigeic earthwormPerionyx excavatus, and to assess the influence of this earthworm on the decomposition of these materials. Maize stover was found to be the most suitable of the food materials used. Population growth ofP. excavatus was enhanced by addition of these organic materials in the temperature range 24°-30°C, while the population was adversely affected above 30°C in a vermiculture system. Addition of earthworms accelerated the breakdown of residues, which ultimately resulted in a lowering of the C:N ratio, water-soluble carbon and carbohydrates, and increased ash percentage and cation exchange capacity compared with their respective controls.     

Nitrate assimilation in pea leaves in the presence of cadmium

Supply of 0.01 to 1.0 mM Cd acetates either to the intact seedlings or to the excised leaves of 15 dPisum sativum L. Cv. Bonvilla seedlings inhibitedin vivo nitrate reductase activity (NRA), total soluble protein, chlorophyll, and carotenoids. The inhibition was independent of metal concentrations. In excised leaf tissues, higher concentrations (0.5 to 1.0 mM) of Cd had no conspicuous effect on nitrate assimilation. When NRA was assayed byin vitro method, an increase of 12 to 45% was obtained with Cd in intact and excised leaves. It appears that NRA is more sensitive to Cd concentration than any other parameter examined.     

An application of the mixed linear model and the dirichlet process prior in veterinary medicine research

This article applies Bayesian nonparametric techniques of analysis to the mixed linear model. The distribution of the random effects is specific as a nonparametric prior. A Dirichlet process prior is specified on the space of prior distributions. A modified Dirichlet process is described and applied using a Gibbs sampler. The approach is demonstrated in an investigation of the changes over time of packed cell volume in two breeds of cattle.     

Seasonal changes in periphyton nitrogen fixation in a protected tropical wetland

Cyanobacteria are important for global nitrogen cycle and often form complex associations referred to as cyanobacterial mats or periphyton that are common in tropical, limestone-based wetlands. The objective of this study was to monitor the nitrogen fixation rate using the acetylene reduction assay of these cyanobacterial mats in a tropical, unfertilized, and protected wetland. To account for temporal and spatial variation of nitrogenase activity, we were interested in seasons in a hydrological cycle (dry, rains, and end of rains), sites with different vascular vegetation, and rates of nitrogenase activity in a 24-h cycle. The annual average of nitrogenase activity was 22 nmol C₂H₄ cm⁻² h⁻¹, with a range of <6 to 35 nmol C₂H₄ cm⁻² h⁻¹, and the annual nitrogen fixation rate of our study site (9.0 g N m⁻² year⁻¹) is higher than similar estimates from other freshwater wetlands. There was a clear temporal pattern in nitrogenase activity with a maximum rate occurring during the rainy season (August) and a maximum nitrogenase activity occurring between 0600 and 1200 hours. We found spatial differences in nitrogenase activity among the four sites that could be attributed to variations in species composition within the periphyton.