Mechanism of mercerization revealed by X-ray diffraction

We studied the crystalline conversion of cellulose fiber from cellulose I to cellulose II (mercerization) by X-ray diffraction, focusing on the putative chain-polarity conversion from parallel to antiparallel. The structural change of Na-cellulose was examined during stepwise changes in NaOH concentration. Either Na-cellulose I or Na-cellulose II was formed depending on the initial NaOH concentration. Once formed, both structures were stable and did not inter-convert to each other when the NaOH concentration was changed. Such stability indicates that the parallel-to-antiparallel conversion is not likely to take place in the crystalline region of Na-cellulose. Regeneration of cellulose II from both forms of alkali cellulose proceeded with the formation of 0.44 nm lattice plane corresponding to the sheet of (1 ¯1 0) plane of cellulose II, showing that the molecular stacking due to van der Waals' interaction is the driving force of the formation of cellulose II. A mechanism was proposed whereby the geometry of the cellulose molecule allows close fitting of the hydrophobic faces only in the antiparallel arrangement, thus driving formation of the antiparallel structure of cellulose II.This study was presented in part at the 47th Annual Meeting of the Japan Wood Research Society, Kochi, April 1997; and at the 6th Annual Meeting of the Cellulose Society of Japan, Tokyo, June 1999     

Self-recognition in social amoebae is mediated by allelic pairs of tiger genes

Free-living cells of the social amoebae Dictyostelium discoideum can aggregate and develop into multicellular fruiting bodies in which many die altruistically as they become stalk cells that support the surviving spores. Dictyostelium cells exhibit kin discrimination--a potential defense against cheaters, which sporulate without contributing to the stalk. Kin discrimination depends on strain relatedness, and the polymorphic genes tgrB1 and tgrC1 are potential components of that mechanism. Here, we demonstrate a direct role for these genes in kin discrimination. We show that a matching pair of tgrB1 and tgrC1 alleles is necessary and sufficient for attractive self-recognition, which is mediated by differential cell-cell adhesion. We propose that TgrB1 and TgrC1 proteins mediate this adhesion through direct binding. This system is a genetically tractable ancient model of eukaryotic self-recognition.     

Monitoring of the genetic variability of the hatchery and recaptured fish in the stock enhancement program of the rare species barfin flounder <Emphasis Type="Italic">Verasper moseri</Emphasis>

ABSTRACT:   In relation to the stock enhancement program for barfin flounder, hatchery juveniles produced in 2001 were genotyped using microsatellite DNA markers (msDNA) and then released to natural waters. Subsequently, recaptured individuals, designated as 'tentative recaptured', were examined using msDNA. In order to evaluate the effectiveness of the stock enhancement program, pairwise F _ST and genic differentiation tests were used to estimate the genetic divergence between the wild samples, the hatchery broodstock, and the tentative recaptured samples. Analysis showed significant differentiation among these three groups. Pedigree determination by msDNA was used to establish the origin of the tentative recaptured individuals, in order to elucidate whether they were hatchery produced, 'real recaptured', or wild specimens. Wild individuals were not found. The effective population size of the real recaptured stock was very low ( N _e = 16.6). Equal family survivability was observed between the released and real recaptured stocks, indicating that the genetic variability of the released stock was maintained in the natural environment. Future broodstock management, breeding designs, and family contribution equalization of the offspring to be released will be required in this rare species to avoid unintended genetic differentiation between the wild population and the hatchery broodstock.     

Clay minerals of soils from olivine basalt in Kyushu

Soil scientists have been encouraged to investigate soils for clay minerals by very fact that soil characteristics fundamentally depend upon the nature of their clay. It is generally recognized that clays of different species develop under different conditions such as drainage, temperature weathering age, and parent rocks. On Kyushu Island, heavy, reddish soils derived from olivine basalt cover a considerably large area of its northeastern part, and a numbar of small islands belonging to Kyushu. Koga ^* Hiroshi Koga, Clay minerals of Oura basaltic soil, 1954 (unpublished). of this laboratory found a basaltic soil of clay consisting of hydrated halloysite, halloysite, hematite, and gibbsite at the eastern foot of Mt. Tara, by examining its clay separates by X-ray, thermal, chemical, and electron microscopical techniques. Kanno et al⁵ reported that in a basaltic soil at Oura, Saga prefecture, hydrated halloysite developed from plagioclase and ferro-magnesian minerals with gibbsite and hematite which was more abundant than in other Red and Yellow Soils. They also found some illite present in the soil derived from unknown minerals, and halloysite dehydrated in upper layers.     

Nitrogen and organic matter of volcanic ash soils of Santa Bárbara Association in Chile

Santa Bárbara association is a group of Andosols widely distributed on the western foothills of the Andes Mountains in the Central Valley of Chile from about 36° to 40° south latitude. The soils of this association may be divided into two groups—south and north—by the characteristics of soil organic matter, although they are much alike in morphology. The line of demarcation between the groups lies at about 38° south latitude.

The potential nitrogen fertility or , the content of easily decomposable organic nitrogen is greater in the south soils than in the north soils of which humic matter is at a more advanced stage of humification, as compared with that of the south soils. Dry summers have caused the north soils to lessen in their potential nitrogen fertility and to stimulate humification of organic matter, altering the organic matter in quantity as well as in nature. It is evident that the analysis of soil organic matter is an effectual measure for the characterization of Andosols, and hence for the classification of the soils.

It is very probable that a considerable water erosion has occurred in the soils of this association, transporting the fine soil particles from the mid-slope to the foot of the hills.     

Phosphate retention on soils in the central valley of Chile

The retention of phosphate and the content of available phosphate were estimated by a new method with monobasic sodium phosphate (pH 4.5) and the Olsen's method, respectively, on the Principal soils in the central valley in Chile. Trumaos (Andosols) are, in general, distinctly in the value of P-retention than other soils with the exception of trumaos of alluvial origins. This characteristic of trumaos can be employed for the identification of trumaos among r soils and alluvial trumaos among ordinary ones. The P-retention value of volcanic ash soils of decreases with the crystallization of the amorphous inorganic materials. According to the data of P-retention, certain rojos arcillosos (red clays) are presumed to have surface horizons of volcanic ash origins. Granitic rojos arcillosos are notably low in P-retention compared with other arcillosos. The organic matter content and P-retention value of soils are closely related to each other, suggesting that both organic matter and phosphate are retained by soils on the same a erials though by different mechanisms.

The content of available phosphate in surface horizons varied from soil to soil and no difference was noticeable among the soil groups of trumaos, rojos arcillosos, and paddy soils. Also no relation was found between the P-retention value and available phosphate content. However, in lower horizons where plant roots are scarce or absent, no available phosphate was found in trumaos in contrast to the presence of an appreciable amount of phosphate in rojos arcillosos. Phosphate of native trumaos appear to be practically insoluble. The surface soil rich in available phosphate was limited to cultivated fields, suggesting that the available phosphate was largely due to the remnant of applied fertilizers and partly to the remains of organic phosphorus from plants and soil organisms. The content of available phosphate tends to decrease with time after application of phosphates, and a significant negative correlation coefficient was obtained between the amount of available phosphate and the P-retention value of soils at least by three months after application of phosphate. The higher the P-retention value of soils, the less the content of available phosphate, and the faster the fixation of phosphate.     

Assessment of biochemical and antioxidant diversities in a shallot germplasm collection from Vietnam and its surrounding countries

The shallot is considered an important genetic resource for Allium breeding programs because, compared to the bulb onion, the shallot contains higher levels of several functional chemical compounds. However, there may be differences in content, composition and beneficial activity among shallot landraces. This study was carried out to characterize the differences in phenolic, quercetin, sugar, S-alk(en)yl-l-cystein sulfoxide (ACSO), and saponin contents and antioxidant capacities of a shallot germplasm including 31 strains derived from different regions of Vietnam and six other countries. A wide variation was observed in the quantitative analyses of the chemical contents. Shallots with high contents of polyphenols, saponins, and quercetins were found in the south of Vietnam and other low-latitude countries. Meanwhile, those possessing fairly high ACSO and sugar contents were observed in the north of Vietnam. Qualitative analysis of saponins via thin layer chromatography did not show clear variation among shallot strains, but polymorphism was observed between the shallot and other Allium species, such as A. roylei. The principal component analysis could clearly discriminate shallot strains by their geographical origins. All shallot strains showed potent antioxidant activities in a DPPH assay. The highest antioxidant capacity was in the strains possessing relatively high contents of polyphenol, quercetin, and saponin. Significant correlations were found between antioxidant capacity (IC ₅₀ ^?1 ) and four groups of chemical compounds (polyphenols, quercetins, saponins, and ACSOs) (r = 0.40–0.59). A strong correlation was observed between IC ₅₀ ^?1 and quercetin contents (r = 0.59, p < 0.01). The six Fusarium-inoculated shallot strains seemed to be adequately resistant against disease, and the levels of resistance may be related to the saponin content in the bulb tissues.     

Allophane in Some Ando Soils

Allophane has been known to occur widely in volcanic ash soils in Japan and New Zealand. However, exact knowledge of its nature has not been well established, mainly because of extreme difficulty to separate it in pure state and of its x-amorphous nature. In the course of the studies on soil allophane, it was noticed that certain Ando soils contained two different mineral colloids together, in addition to crystalline clay minerals and free sesquioxides. X-ray examination revealed that one was x-amorphous colloid which would be called allophane, and the other an unknown colloid of low crystallinity. Imogolite*** Imogolite will be described in a subsequent paper by the present authors. was proposed as the name of the latter colloid by the present authors after imogo in which imogolite was first found. Imogo is a brownish yellow, volcanic ash soil. in the Kuma basin in the Kumamoto Prefecture³⁾. When deferration treatment is applied to the soils, allophane disperses both in an acid and alkaline media, whereas imogolite disperses in an acid medium and flocculates in an alkaline one.     

Retention of mercury by soils

During the past one and a half decades there has been a marked increase in the total amount of mercury applied to the crop for control of agricultural pests particularly rice blight. It seems likely that the accumulation of mercury in agricultural products and soils has been increased. FURUTANI and OSAJIMA (3.4.5) investigated the content of mercury in rice, fruits, and vegetables and inferred that the mercury in fond products is partly the residue of fungicides sprayed on crops, and partly due to absorption from the soil by plant roots.