Estimating coarse root biomass with ground penetrating radar in a tree-based intercropping system

Conventional measurements of tree root biomass in tree-based intercropping (TBI) systems can be inadequate in capturing the heterogeneity of rooting patterns or can be highly destructive and non-repeatable. In this study, we estimated coarse root biomass using ground penetrating radar (GPR) of 25-year-old trees inclusive of five species (Populus deltoides × nigra clone DN-177, Juglans nigra L., Quercus rubra L., Picea abies L. Karst, and Thuja occidentalis L.) at a TBI site in Southern Ontario, Canada. Subsurface images generated by GPR were collected in grids (4.5 × 4.5 m) centred on tree stems. The predictive relationship developed between GPR signal response and root biomass was corrected for species effects prior to tree-scale estimates of belowground biomass. Accuracy of the tree-scale estimates was assessed by comparing coarse root biomass measured from complete excavations of the corresponding tree. The mean coarse root biomass estimated from GPR analysis was 54.1 ± 8.7 kg tree^?1 (mean ± S.E.; n = 12), within 1 % of the mean coarse root biomass measured from excavation. Overall there was a root mean square error of 14.4 kg between measured and estimated biomass with no detectable bias despite variable conditions within the in-field and multi-species study. Root system C storage by species, calculated with species-specific root carbon concentrations, is estimated at 5.4 ± 0.7–34.8 ± 6.9 kg C tree^?1 at this site. GPR is an effective tool for non-destructively predicting coarse root biomass in multi-species environments such as temperate TBI systems.     

Treatment of traumatic cervical myelopathy with surgery, prolonged positive-pressure ventilation, and physical therapy in a dog

CASE DESCRIPTION: A 9-year-old dog was evaluated for traumatic cervical myelopathy after a surgical attempt to realign and stabilize the C2 and C3 vertebrae. CLINICAL FINDINGS: The dog could not ventilate spontaneously and was tetraplegic; positive-pressure ventilation (PPV) was maintained. Myelography and computed tomography revealed spinal cord compression with subluxation of the C2 and C3 vertebrae and extrusion of the C2-3 intervertebral disk. TREATMENT AND OUTCOME: Surgically, the protruding disk material was removed and the vertebrae were realigned with screws and wire. For PPV, assist control ventilation in volume control mode and then in pressure control mode was used in the first 6 days; this was followed by synchronized intermittent mandatory ventilation until 33 days after the injury; then only continuous positive airway pressure was provided until the dog could breathe unassisted, 37 days after the injury. Physical therapy that included passive range of motion exercises, neuromuscular electrical stimulation, and functional weight-bearing positions was administered until the dog was discharged 46 days after injury; the dog was severely ataxic and tetraparetic but could walk. Therapy was continued at home, and 1 year later, the dog could run and had moderate ataxia and tetraparesis. CLINICAL RELEVANCE: Hypoventilation with tetraparesis in traumatic spinal cord injury can be successfully treated with PPV exceeding 30 days, surgery, and physical therapy.     

Behavioral responses of brown bears mediate nutritional effects of experimentally introduced tourism

To develop a conceptual understanding of the interaction between tourists and bears, this study examined the responses of brown bears (Ursus arctos) to experimentally introduced tourism at Douglas River in south-central Alaska within the framework of current predator-prey theory. Factors eliciting displacement and the nutritional consequences of behavioral changes were measured. GPS collars were deployed to track temporal and spatial resource use and scan and focal observations were used to quantify foraging efficiency, vigilance behavior, and bear use of various food resources. Total food intake was quantified by combining data on food resource use based on GPS locations and foraging efficiency was measured using spotting scopes from long distances. Seasonal food availability and quality were monitored and utilized as co-variates in comparisons between pre-treatment and treatment years. Though the bear population exhibited significant behavioral differences between the presence and absence of humans, changes in behavior generally mediated effects on total food intake. Adult males at a salt marsh viewing area were the only sex/age class exhibiting reduced food intake resulting from a 15% decline in foraging time when viewers were present. Salmon intake did not differ between pre-treatment and treatment years despite a 10% decline in time spent fishing when viewers were present. The tightly controlled experimental bear-viewing introduced in this study allowed bears to evaluate predation risk associated with human activity and optimally respond to minimize costs due to changes in foraging activities.     

Muscular thin films for building actuators and powering devices

We demonstrate the assembly of biohybrid materials from engineered tissues and synthetic polymer thin films. The constructs were built by culturing neonatal rat ventricular cardiomyocytes on polydimethylsiloxane thin films micropatterned with extracellular matrix proteins to promote spatially ordered, two-dimensional myogenesis. The constructs, termed muscular thin films, adopted functional, three-dimensional conformations when released from a thermally sensitive polymer substrate and were designed to perform biomimetic tasks by varying tissue architecture, thin-film shape, and electrical-pacing protocol. These centimeter-scale constructs perform functions as diverse as gripping, pumping, walking, and swimming with fine spatial and temporal control and generating specific forces as high as 4 millinewtons per square millimeter.     

Domesticated nature: shaping landscapes and ecosystems for human welfare

Like all species, humans have exercised their impulse to perpetuate and propagate themselves. In doing so, we have domesticated landscapes and ecosystems in ways that enhance our food supplies, reduce exposure to predators and natural dangers, and promote commerce. On average, the net benefits to humankind of domesticated nature have been positive. We have, of course, made mistakes, causing unforeseen changes in ecosystem attributes, while leaving few, if any, truly wild places on Earth. Going into the future, scientists can help humanity to domesticate nature more wisely by quantifying the tradeoffs among ecosystem services, such as how increasing the provision of one service may decrease ecosystem resilience and the provision of other services.     

A single IGF1 allele is a major determinant of small size in dogs

The domestic dog exhibits greater diversity in body size than any other terrestrial vertebrate. We used a strategy that exploits the breed structure of dogs to investigate the genetic basis of size. First, through a genome-wide scan, we identified a major quantitative trait locus (QTL) on chromosome 15 influencing size variation within a single breed. Second, we examined genetic variation in the 15-megabase interval surrounding the QTL in small and giant breeds and found marked evidence for a selective sweep spanning a single gene (IGF1), encoding insulin-like growth factor 1. A single IGF1 single-nucleotide polymorphism haplotype is common to all small breeds and nearly absent from giant breeds, suggesting that the same causal sequence variant is a major contributor to body size in all small dogs.     

Mercury cratering record viewed from MESSENGER's first flyby

Morphologies and size-frequency distributions of impact craters on Mercury imaged during MESSENGER's first flyby elucidate the planet's geological history. Plains interior to the Caloris basin displaying color and albedo contrasts have comparable crater densities and therefore similar ages. Smooth plains exterior to Caloris exhibit a crater density approximately 40% less than on interior plains and are thus volcanic and not Caloris impact ejecta. The size distribution of smooth-plains craters matches that of lunar craters postdating the Late Heavy Bombardment, implying that the plains formed no earlier than 3.8 billion years ago (Ga). At diameters less than or equal to 8 to 10 kilometers, secondary impact craters on Mercury are more abundant than primaries; this transition diameter is much larger than that on the Moon or Mars. A low density of craters on the peak-ring basin Raditladi implies that it may be younger than 1 Ga.     

Inactivation of TNF signaling by rationally designed dominant-negative TNF variants

Tumor necrosis factor (TNF) is a key regulator of inflammatory responses and has been implicated in many pathological conditions. We used structure-based design to engineer variant TNF proteins that rapidly form heterotrimers with native TNF to give complexes that neither bind to nor stimulate signaling through TNF receptors. Thus, TNF is inactivated by sequestration. Dominant-negative TNFs represent a possible approach to anti-inflammatory biotherapeutics, and experiments in animal models show that the strategy can attenuate TNF-mediated pathology. Similar rational design could be used to engineer inhibitors of additional TNF superfamily cytokines as well as other multimeric ligands.     

Discovery and directed evolution of a glyphosate tolerance gene

The herbicide glyphosate is effectively detoxified by N-acetylation. We screened a collection of microbial isolates and discovered enzymes exhibiting glyphosate N-acetyltransferase (GAT) activity. Kinetic properties of the discovered enzymes were insufficient to confer glyphosate tolerance to transgenic organisms. Eleven iterations of DNA shuffling improved enzyme efficiency by nearly four orders of magnitude from 0.87 mM-1 min-1 to 8320 mM-1 min-1. From the fifth iteration and beyond, GAT enzymes conferred increasing glyphosate tolerance to Escherichia coli, Arabidopsis, tobacco, and maize. Glyphosate acetylation provides an alternative strategy for supporting glyphosate use on crops.