Spatiotemporal ecology of juvenile Muskellunge (Esox masquinongy) and Northern Pike (Esox lucius) in upper St. Lawrence River nursery bays during their inaugural fall and winter

Understanding the spatial ecology of juvenile freshwater fish beyond summer months is an essential component of their life history puzzle. To this end, declines in the natural populations of sympatric Muskellunge (Esox masquinongy) and Northern Pike (Esox lucius) in the upper St. Lawrence River prompted study of spatiotemporal patterns and habitat requirements associated with earlier life stages of these congeneric, freshwater predators in fall and overwinter periods. Over 75 age-0 esocids were tagged and passively monitored using acoustic telemetry in four nursery embayments in fall and winter months from 2015 and 2017 months to elucidate spatiotemporal ecology and test hypotheses related to emigration. Presence, residency, space and habitat use were assessed and modelled against key environmental (i.e. water temperature and level) and biological (total length) covariates using mixed effect models. Muskellunge were found to spend more time in deeper, littoral regions with canopy-forming, submerged aquatic vegetation while Northern Pike aggregated in the deepest, highly vegetated region of their nursery embayment. Results suggest fish may exhibit transitionary movements in fall months and may span outwards into nearshore regions along the main river channel. Studies informing coastal restoration initiatives to increase Muskellunge production are encouraged to assess sympatric habitat use relative to prominent embayment structures and further explore depth partitioning by these young predators. With a substantial influence from water-level regulation on use of nursery habitat, future studies must work in concert with management plans aimed at producing more natural riverine cycles and thus increased recruitment of Esox species.     

VHSV IVb infection and autophagy modulation in the rainbow trout gill epithelial cell line RTgill-W1

Autophagy modulation influences the success of intracellular pathogens, and an understanding of the mechanisms involved might offer practical options to reduce the impact of infectious disease. Viral haemorrhagic septicaemia virus (VHSV) can cause high mortality and economic loss in some commercial fish species. VHSV IVb was used to infect a rainbow trout gill cell line, RTgill-W1, followed by the treatment of the cells with different autophagy-modulating reagents. LC3II protein using Western blot was significantly (p < .05) decreased for two days following VHSV infection, and immunofluorescence confirmed that LC3II-positive intracytoplasmic puncta were also decreased. Infection with VHSV resulted in significantly decreased expression of the autophagy-related (Atg) genes atg4, at12, atg13 and becn1 after one day using quantitative PCR. Both viral gene copy number and VHSV N protein were significantly decreased by treating the cells with autophagy-blocking (chloroquine) and autophagy-inhibiting reagents (deoxynivalenol and 3-methyladenine) after three days, while autophagy induction (restricted nutrition and rapamycin) had limited effect. Only treatment of RTgill-W1 with deoxynivalenol resulted in a significant increase in expression of type I interferon. Therefore, the suppression of autophagy initially occurs after VHSV IVb infection, but the modulation of autophagy can also inhibit VHSV IVb infection in RTgill-W1 after three days.     

Gender-based violence: Relevance for fisheries practitioners

Attention to human dimensions of capture fisheries involves understanding how harms and benefits are experienced and distributed among different groups or people. Yet, not all harms are well understood or adequately addressed. There is a general (mis)conception that gender-based violence (GBV) is not of relevance for fisheries management or a topic within the remit of practitioners. Through a global review of capture fisheries, we illustrate how five types of GBV—physical, sexual, psychological, economic and cultural—are pervasive and can be reinforced by fisheries policies, practices and institutions. Our synthesis shows a variety of activities associated with these forms of violence, such as labour and human rights abuses, unsafe working and living conditions for children, women and men, and the cultural acceptance of various forms of discrimination. We argue GBV cannot be disentangled from other actions taken to achieve equitable social outcomes through fisheries management. We provide seven recommendations to help practitioners understand and work towards addressing GBV in capture fisheries: (1) removing gender blindness and bias by investing in gender-sensitisation of the sector; (2) forming strategic partnerships; (3) improving policy and coordination between regulatory bodies; (4) increasing investments in labour rights and laws; (5) gender integrative programme design and implementation; (6) investing in specific programs for the empowerment of women; and (7) investing in specific programs for men seeking healthy models of masculinity.     

Assessing the inclusion of seafood in the sustainable diet literature

The literature on sustainable diets is broad in its scope, and application yet is consistently supportive of a move away from animal‐based diets towards more plant‐based diets. The positioning of seafood within the sustainable diet literature is less clear. A literature review was conducted to examine how the environmental impacts of seafood consumption are assessed and what conclusions are being drawn about the inclusion of seafood in a sustainable diet. Seafood is an essential part of the global food system but is not adequately addressed in most of the sustainable diet literature. Aquaculture, the world's fastest growing food sector, was considered by very few papers. Seafood consumption was commonly presented as a dilemma due to the perceived trade‐offs between positive health outcomes from eating seafood and concerns of overfishing. A number of studies included seafood as part of their sustainable diet scenario, or as part of a diet that had lower impacts than current consumption. Most of the indicators used were biophysical, with a strong focus on greenhouse gas emissions, and very few studies addressed biological or ecological impacts. The assessment of seafood was limited in many studies due to relevant data sets not being incorporated into the models used. Where they were used, data sources and methodological choices were often not stated thereby limiting the transparency of many studies. Both farmed and wild‐capture production methods need to be integrated into research on the impacts of diets and future food scenarios to better understand and promote the benefits of sustainable diets.     

Genetic structure of Irish freshwater pearl mussels (Margaritifera margaritifera and Margaritifera durrovensis): Validity of subspecies,roles of host fish,and conservation implications

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Role of organic fertilizers in walleye (Sander vitreus) production in plastic‐lined culture ponds

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NMR detection of structures in the HIV-1 5'-leader RNA that regulate genome packaging

The 5'-leader of the HIV-1 genome regulates multiple functions during viral replication via mechanisms that have yet to be established. We developed a nuclear magnetic resonance approach that enabled direct detection of structural elements within the intact leader (712-nucleotide dimer) that are critical for genome packaging. Residues spanning the gag start codon (AUG) form a hairpin in the monomeric leader and base pair with residues of the unique-5' region (U5) in the dimer. U5:AUG formation promotes dimerization by displacing and exposing a dimer-promoting hairpin and enhances binding by the nucleocapsid (NC) protein, which is the cognate domain of the viral Gag polyprotein that directs packaging. Our findings support a packaging mechanism in which translation, dimerization, NC binding, and packaging are regulated by a common RNA structural switch.     

Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens" and "Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans"

Mekel-Bobrov et al. and Evans et al. (Reports, 9 Sept. 2005, p. 1720 and p. 1717, respectively) examined sequence data from modern humans within two gene regions associated with brain development, ASPM and microcephalin, and concluded that selection of these genes must be ongoing. We show that models of human history that include both population growth and spatial structure can generate the observed patterns without selection.     

Flying over the farm: understanding drone adoption by Australian irrigators

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Evolutionary diversity of the mitochondrial calcium uniporter

Calcium uptake into mitochondria occurs via a recently identified ion channel called the uniporter. Here, we characterize the phylogenomic distribution of the uniporter's membrane-spanning pore subunit (MCU) and regulatory partner (MICU1). Homologs of both components tend to co-occur in all major branches of eukaryotic life, but both have been lost along certain protozoan and fungal lineages. Several bacterial genomes also contain putative MCU homologs that may represent prokaryotic calcium channels. The analyses indicate that the uniporter may have been an early feature of mitochondria.