Analysis of Multiple Binary Responses Using a Threshold Model

Several discrete responses, such as health status, reproduction performance and meat quality, are routinely collected for several livestock species. These traits are often of binary or discrete nature. Genetic evaluation for these traits is frequently conducted using a single-trait threshold model, or they are considered continuous responses either in univariate or in multivariate context. Implementation of threshold models in the presence of several binary responses or a mixture of binary and continuous responses is far from simple. The complexity of such implementation is primarily due to the incomplete randomness of the residual (co)variance matrix. In the current study, a multiple binary trait simulation was carried out in order to implement and validate a new procedure for dealing with the consequences of the restrictions imposed to the residual variance using threshold models. Using three and eight binary responses, the proposed method was able to estimate all unknown parameters without any noticeable bias. In fact, for simulated residual correlations ranging from ?0.8 to 0.8, the resulting HPD 95% intervals included the true values in all cases. The proposed procedure involved limited additional computational cost and is straightforward to implement independent of the number of binary responses involved in the analysis. Monitoring of the convergence of the procedure must be conducted at the identifiable scale, and special care must be placed on the selection of the prior of the non-identifiable model. The latter could have serious consequences on the final results due to potential truncation of the parameter space.     

氮肥及硝化抑制剂配合施用对石灰性土壤二氧化碳释放的影响

为研究施用氮肥对同时含有有机碳及无机碳石灰性土壤碳释放的影响,在陕西杨凌进行田间试验,比较了不同施氮量(0、160、220 kg·hm~(-2))及其与硝化抑制剂(DCD)配合(N160、N220及N160+DCD、N220+DCD)对土壤pH值、矿质态氮含量和二氧化碳(CO_2)释放量的影响。结果表明:施用氮肥显著降低了耕层土壤pH;配施DCD后土壤pH降低幅度小于未加DCD处理;加入DCD使氮肥的硝化过程推迟了约20 d;未加DCD处理的土壤CO_2释放量随施氮量增加而增加,试验结束时(施肥37 d后)土壤CO_2累积释放量最高达到167.1 g·m~(-2)。与N0处理相比,N160和N220处理的土壤CO_2累积释放量显著增加,增幅分别为20.9%和25.7%;N160+DCD和N220+DCD处理显著降低了土壤CO_2累积释放量,比对应相同施氮量处理分别降低了13.5%和11.0%。上述结果说明施用氮肥会同时影响石灰性土壤有机碳及无机碳的释放,施用氮肥引起的土壤无机碳的释放值得关注。     

Genetic dissection of grain yield traits in a large collection of spring wheat (Triticum aestivum L.) germplasm

Journal of Crop Science and Biotechnology - Understanding genetic architecture of a crop germplasm is necessary for designing a successful breeding program. Herein, we evaluated a large collection...     

Efficacy of various concentrations of synthetic hormones on the induced breeding of Channa marulius (Sole)

A study was conducted to determine the artificial breeding response, embryonic and larval development of giant snakehead, Channa marulius, with the application of various dosages of stimulatory hormones: Suprefact® (LHRH) agonist and Ovaprim® (GnRH + dopamine inhibitor). First and second hormonal dosages of Suprefact® (diluted) and Ovaprim® (0.3, 0.4, and 0.5 ml for male and 0.8, 0.9, and 1.0 ml for females per kilogram body weight) were used. There were three treatments T₁, T₂, and T₃ and each treatment had three replicates. Male fish were treated with T₁ (0.3), T₂ (0.4), T₃ (0.5) ml kg⁻¹ of body weight while female fish with T₁ (0.8), T₂ (0.9), T₃ (1.0) ml kg⁻¹ of body weight. The results showed that fish stimulated with T₃ (1.0) obtained better fecundity rate (2951.7) followed by T₂ (0.4) (2678.3), while the lowest fecundity (466.7) was recorded in T₁. The numerically higher values of gonado-somatic index (males and females) and fertilization rate appeared in T₂. The highest survival rate (97.1%) was found in T₃ followed by T₂ (97.0%), while the lowest (32.2%) in T₁. In conclusion, the application of Suprefact® and Ovaprim® at 0.4 and 0.5 ml kg⁻¹ body weight for male and 0.9 and 1.0 ml kg⁻¹ for female fish successfully stimulated snakehead fish induced breeding.     

Zinc Ameliorates Fruit Yield and Quality of Mangoes Cultivated in Calcareous Soils

Zinc (Zn) deficiency is frequently observed in mangoes grown in calcareous soils. Inherent inability of mango to extract sufficient Zn from the soil exacerbates this situation. Therefore, mitigating effects of Zn application was investigated on flowering, fruit setting, yield and quality of mango cv. Samar Bahisht Chaunsa growing in calcareous soils. The experiment consisted of five treatments: control—no Zn, soil application of 50 and 100 g ZnSO₄ per tree and foliar application of 0.5? and 1.0?% ZnSO₄ solution. Zn was applied twice in the 2^nd week of November, 2011 and 3^rd week of March, 2012, respectively. The experiment was repeated on the same dates during the next growing season. Zn application significantly increased number of flower panicle, fruits matured panicle, leaf Zn concentrations, fruit size, peel thickness, fruit weights at harvest and after ripening and fruit yield tree, whereas it reduced malformed panicles and early fruit drop. However, flower sex ratio and fruit set remained statistically unaffected. Similarly, fruit quality in terms of total soluble solids, flesh color, aroma, flavor and overall acceptability significantly improved as compared to control. Foliar application mitigated Zn deficiency more effectively than the soil application in calcareous soils.     

Mutation of alpha-tubulin genes in trifluralin-resistant water foxtail (Alopecurus aequalis)

BACKGROUND: Trifluralin‐resistant biotypes of water foxtail (Alopecurus aequalis) have been identified in wheat fields from northern Kyushu, Japan. Water foxtail is a winter‐annual grassy weed, causing substantial crop losses. This study reports on mutation in α‐tubulin (TUA) genes from water foxtail, the site of action of trifluralin. RESULTS: Two trifluralin‐sensitive (S) Chikugo and Ukiha biotypes and four trifluralin‐resistant (R) Asakura‐1, Asakura‐2, Tamana and Tosu biotypes of water foxtail were used for herbicide resistance analysis. R biotypes showed 5.7–30.7‐fold trifluralin resistance compared with the S biotypes. No differences in the uptake and translocation of ¹⁴C‐trifluralin were observed between Chikugo (S) biotype and Asakura‐1 (R) biotype. Most of the ¹⁴C detected in the plant material was in the root tissue, and no substantial increases were noted in shoot tissues. Comparative TUA sequence analysis revealed two independent single amino acid changes: change of Val into Phe at position 202 in TUA1 and change of Leu into Met at position 125 in TUA3 in Asakura‐1 biotype. In the Tamana (R) biotype, two amino acid changes of Leu to Phe at position 136 and Val to Phe at position 202 were observed in the predicted amino acid sequence of TUA1, compared with Chikugo (S) biotype. CONCLUSION: The results provide preliminary molecular explanation for the resistance of water foxtail to trifluralin, a phenomenon that has arisen as a result of repeated exposure to this class of herbicide. This is the first report of α‐tubulin mutation in water foxtail and for any Alopecurus species reported in the literature. Copyright © 2011 Society of Chemical Industry     

Dysregulated Expression of Long Non-Coding RNA MINCR and EZH2 in Colorectal Cancer

Background:As critical regulators, lncRNAs have attracted attention from researchers for diagnostic, prognostic, and therapeutic purposes in human carcinogenesis via interfering with mRNAs such as EZH2. Nevertheless, the potent roles and molecular mechanisms of these RNAs in CRC are not clearly known. Methods:In this study, the tissue expressions of lncRNA MINCR and EZH2 mRNA between colorectal tumors and polyps were compared with the adjacent normal tissues collected from 114 Iranian patients, using real-time PCR method. Furthermore, the correlation of the expression levels of MINCR and EZH2 with other clinical parameters was evaluated. Results:The significant overexpression of MINCR and EZH2 were observed in the CRC tissues compared to control tissues (p < 0.0001). This observation confirmed the association of these expression enhancements with the pathological stage of CRC patients. Conclusion:Our findings revealed that the expression of MINCR significantly alters during CRC development, and it can be identified as a potential biomarker for the detection of CRC.Key Words: Colorectal cancer, EZH2, Long non-coding RNA     

遥感数据结合地统计学方法在林业中的应用

在林业研究中,具有空间属性的林业数据分析、建模和预测越来越受到关注。遥感技术与地统计学方法相结合,提供了大尺度空间格局分析、森林资源动态监测和预测的方法。文中简单介绍了遥感技术与地统计学的方法和特点,从监测与分类、估计与模拟2个方面综述地统计学结合遥感技术在林业中的应用,并针对遥感数据结合地统计学方法在林业研究中存在的问题加以讨论。