Mycotic proventriculitis in gray partridges (Perdix perdix) on two game bird farms

Proventriculitis and chronic respiratory disease were diagnosed in two flocks of gray partridges (Perdix perdix) on unrelated Swedish game bird farms. Affected birds showed loss of condition, respiratory signs, and flock mortality rates of 50 and 98%, respectively. The proventricular lesions were associated closely with fungal organisms that were microscopically indistinguishable from the ascomycetous yeast Macrorhabdus ornithogaster (former provisional name "megabacterium"). At necropsy, the proventriculi were swollen and hyperemic, and viscous mucus adhered to the mucosa. Proventricular hemorrhages were commonly detected, and one bird had proventricular rupture and peritonitis. Microscopically, mild to severe subacute to chronic lymphoplasmacytic proventriculitis, microabscesses, necrosis, epithelial metaplasia, disrupted koilin, ulcers, and hemorrhages were observed. Transmission electron microscopy of the proventricular microorganisms revealed a membrane-bound nucleus, vacuoles, ribosomes, microtubules in parallel arrays, and a two-layered cell wall but no mitochondria. Scanning electron microscopy of the proventricular epithelium demonstrated masses of organisms with occasional constrictions in parallel arrangement. Many of the birds also suffered from concurrent respiratory bacterial infections and/or gastrointestinal candidiasis. The clinical course and gross and microscopic proventricular lesions were similar to those described in psittacine and passerine pet birds colonized by M. ornithogaster-like microorganisms but differed from published case reports and experimental infections of chickens in which the clinical signs and lesions have been considerably milder. The findings presented in this paper suggest that mycotic proventriculitis, presumably associated with M. ornithogaster, may be a serious but possibly opportunistic, although unusual, disease problem in gray partridges on game farms.     

Dietary yeast affects preference and performance in <Emphasis Type="Italic">Drosophila suzukii</Emphasis>

Yeasts play an important role in nutrition physiology and host attraction of many Drosophila species, and associations with various yeast species are documented for several drosophilid flies. The pest Drosophila suzukii (Matsumura) has a predominant association with the yeast Hanseniaspora uvarum. However, research has not been conducted on the nutritional physiology of the yeasts associated with D. suzukii (spotted wing drosophila). Therefore, in this study, we determined whether dietary yeast was nutritionally relevant and whether yeast species closely associated with D. suzukii positively affected life-history traits. Our results confirm a crucial role of dietary yeast in the larval development and survival of D. suzukii. Furthermore, we found specific effects of the closely associated yeast species H. uvarum and Candida sp. on larval survival. Observations of the egg-laying behaviour of D. suzukii on cherry fruits artificially colonised with different yeast species revealed that the number of eggs laid increased on fruits colonised with Candida sp. and Saccharomyces cerevisiae.     

Selecting the Number of States in Hidden Markov Models: Pragmatic Solutions Illustrated Using Animal Movement

We discuss the notorious problem of order selection in hidden Markov models, that is of selecting an adequate number of states, highlighting typical pitfalls and practical challenges arising when analyzing real data. Extensive simulations are used to demonstrate the reasons that render order selection particularly challenging in practice despite the conceptual simplicity of the task. In particular, we demonstrate why well-established formal procedures for model selection, such as those based on standard information criteria, tend to favor models with numbers of states that are undesirably large in situations where states shall be meaningful entities. We also offer a pragmatic step-by-step approach together with comprehensive advice for how practitioners can implement order selection. Our proposed strategy is illustrated with a real-data case study on muskox movement.Supplementary materials accompanying this paper appear online.     

The role of reactive iron in long-term carbon sequestration in mangrove sediments

Journal of Soils and Sediments - Despite occupying only 0.5% of the global coastal ocean, mangroves play a disproportionately large role in the capture and retention of atmospheric carbon dioxide...     

Labile water soluble components govern the short-term microbial decay of hydrochar from sewage sludge

Due to higher proportions of labile carbon (C) compounds the suitability of biochar produced by hydrothermal carbonization (HTC) for C sequestration is questionable. We hypothesized that pre-treatment with water would reduce the biological decay of hydrochar from sewage sludge. Unwashed and washed feedstock and hydrochar were incubated in a short-term experiment. The kinetics of the biological decomposition of the materials was calculated on the basis of a double exponential model and the C sequestration potential using the CANDY Carbon Balance (CCB) model. Biological decomposition of the carbonized materials was governed by the percentage of labile C compounds. Mean residence time of a fast (MRT_fast) and slow decay pool (MRT_slow) of unwashed hydrochars varied clearly (MRT_fast: 0.8 – 5.0 months and the MRT_slow: 5.0–18.6 months). The pre-treatment with water removed labile hydrochar C and reduced the biological accessibility. MRT_fast and MRT_slow was increased by intensive washings (MRT_fast: 5.0–7.4 months and the MRT_slow: 14.9 months). High synthesis coefficients suggest that hydrochar C was humified and transferred into stabilized SOC. The results clearly show that once adsorbed components were eliminated, and as compared to pyrolysed biochar hydrochar from sewage sludge may also be useful for soil C sequestration.     

Parr dispersal between streams via a marine environment: A novel mechanism behind straying for anadromous brown trout?

Otolith Sr:Ca profiles demonstrated that juvenile anadromous brown trout (ABT) Salmo trutta may descend to the brackish waters of the Baltic Sea from their natal streams as parr or fry and then migrate into non‐natal streams before transforming into smolt. To our knowledge, no such published documentation exists for ABT. The ecological significance of this life‐history strategy is presently not clear. However, stream shifting through the marine environment should to be considered with regard to stock management and the assessment and restoration of salmonid populations and their potential habitats.     

Response of benthic fauna to experimental bottom fishing: A global meta‐analysis

Bottom‐contact fishing gears are globally the most widespread anthropogenic sources of direct disturbance to the seabed and associated biota. Managing these fishing disturbances requires quantification of gear impacts on biota and the rate of recovery following disturbance. We undertook a systematic review and meta‐analysis of 122 experiments on the effects‐of‐bottom fishing to quantify the removal of benthos in the path of the fishing gear and to estimate rates of recovery following disturbance. A gear pass reduced benthic invertebrate abundance by 26% and species richness by 19%. The effect was strongly gear‐specific, with gears that penetrate deeper into the sediment having a significantly larger impact than those that penetrate less. Sediment composition (% mud and presence of biogenic habitat) and the history of fishing disturbance prior to an experimental fishing event were also important predictors of depletion, with communities in areas that were not previously fished, predominantly muddy or biogenic habitats being more strongly affected by fishing. Sessile and low mobility biota with longer life‐spans such as sponges, soft corals and bivalves took much longer to recover after fishing (>3 year) than mobile biota with shorter life‐spans such as polychaetes and malacostracans (<1 year). This meta‐analysis provides insights into the dynamics of recovery. Our estimates of depletion along with estimates of recovery rates and large‐scale, high‐resolution maps of fishing frequency and habitat will support more rigorous assessment of the environmental impacts of bottom‐contact gears, thus supporting better informed choices in trade‐offs between environmental impacts and fish production.