Soil dissolved organic carbon responses to sugarcane straw removal

Global demand for bioenergy increases interest in biomass‐derived fuels, as ethanol from sugarcane straw. However, straw is the main carbon source to soil and its removal reduces C input, affecting active fractions (dissolved organic carbon, DOC) and C storage. To quantify the effects of straw removal on DOC and C stocks, we built lysimeter system using soil (Rhodic Kandiudox) from sugarcane field. We evaluated four soil depths (1, 20, 50 and 100 cm) and four straw removal rates: no removal NR, medium MR, high HR and total TR, leaving 12, 6, 3 and 0 Mg/ha on the soil surface, respectively. After rainfall, drainage water was collected and analysed for DOC content. Soil C stocks were determined after the 17‐month. Total DOC released at 1‐cm depth amounted to 606, 500, 441 and 157 kg/ha in NR, MR, HR and TR, respectively. Net‐DOC suggests straw as the main source of DOC. Most of DOC in NR (50%) was retained within the 1–20 cm layer, resulting in higher C stock (10 Mg/ha) in the topsoil. In HR and MR, DOC retention was higher within 20–50 cm, suggesting differences in DOC composition. DOC in TR was 40% higher at 20 cm than at 1 cm, indicating C losses from topsoil. Low concentrations of DOC were found at 100‐cm depth, but representing 30% in TR. Straw removal for bioenergy production is sustainable, but we should leave at least 3 Mg/ha of straw to ensure DOC production and soil C storage, taking account the DOC contribution to key soil functions.     

Effects of anthropogenic silt on aquatic macroinvertebrates and abiotic variables in streams in the Brazilian Amazon

Purpose  

While environmental risks associated with petroleum extraction such as oil spills or leaks are relatively well known, little attention has been given to the impacts of silt. The increase in petroleum exploitation in Amazonia has resulted in sediment input to aquatic systems, with impacts on their biodiversity. Here we use a combination of field measurements and statistical analyses to evaluate the impacts of anthropogenic silt derived from the construction of roads, borrow pits, and wells during the terrestrial development of gas and oil, on macroinvertebrate communities in streams of the Urucu Petroleum Province in the Central Brazilian Amazon.     

Determination of immunoglobulin A concentrations in the serum and cerebrospinal fluid of dogs: an estimation of its diagnostic value in canine steroid-responsive meningitis-arteritis

Previous studies on canine steroid-responsive meningitis-arteritis (SRMA) suggested that elevation of immunoglobulin A (IgA) concentrations in both serum and cerebrospinal fluid (CSF) is specific for SRMA throughout the different disease stages. Recent studies however have raised concerns about the value of this test. The purpose of this study was to investigate the diagnostic value of IgA concentration testing in paired CSF and serum samples. IgA concentrations of 525 paired canine CSF and serum samples were evaluated. Samples were obtained from dogs with SRMA (n=311) and dogs with miscellaneous conditions (n=214) such as other central nervous system (CNS) inflammatory diseases (n=34), CNS tumours (n=46), idiopathic epilepsy (n=42), intervertebral disc disease (n=46) and non-CNS diseases (n=46). Serum IgA concentrations were significantly higher in dogs with untreated SRMA compared to those with other diseases. IgA CSF concentrations were significantly higher in dogs with SRMA compared to other disease categories, with the exception of inflammatory CNS disease. The sensitivity for IgA concentrations in serum and CSF was 91% with a specificity of 78%. Analysis of 525 paired samples confirmed that IgA concentrations were higher in dogs with SRMA. Calculation of the diagnostic value of IgA concentration confirmed that the test is highly sensitive for SRMA. Testing paired CSF and serum samples for IgA is still recommended for the diagnosis of suspected cases of SRMA.     

Distribution and genetic diversity of the root‐rot pathogen Neonectria macrodidyma in a forest nursery

The aim of this study was to assess genetic diversity and spatial distribution of 123 strains of the root‐rot pathogen Neonectria macrodidyma isolated from fine living roots of bare‐root nursery cultivated Pinus sylvestris. We found that ITS rDNA sequences were 100% identical for all strains. Arbitrary primed PCR fragment analysis showed the presence of two distinct N. macrodidyma types (Type 1 and Type 2), which included respectively 11 and 14 genotypes composed of 1–29 strains. Results of this study indicate that N. macrodidyma is commonly associated with fine living roots of pine seedlings, is largely disseminated by asexual means of local genotypes and has even distribution in the forest nursery soils. In living roots, N. macrodidyma is likely present as dormant propagules but under favourable conditions, it may develop rapidly and have a significant negative effect on plant health and productivity.     

Production objectives and breeding goals of Sahiwal cattle keepers in Kenya and implications for a breeding programme

The Sahiwal breed has been used for upgrading the East African Zebu (EAZ) for improved milk production and growth performance in the southern rangelands of Kenya. Main users of this breed are Maasai pastoralists. Until now, there has been no deliberate effort to understand why these pastoralists specifically prefer to keep Sahiwal genetic resources as well as which traits are considered important by them and what is the underlying reason for this. However, this information is regarded vital for further development of the breed. A survey was conducted between May and October 2009 among Maasai pastoralists in Kajiado and Narok counties in the Southern part of Kenya, and private ranches and government farms to identify production objectives and breeding goals of Sahiwal cattle producers. Sahiwal genetic resources were mainly kept for domestic milk production and for revenue generation through milk sales and live animals. To a limited extent, they were kept for breeding and also for multiple objectives that included insurance against risks and social functions. Production aims were influenced to varying extents by various household and farmer characteristics. Sahiwal cattle and their crosses were generally perceived to be better with respect to productive traits and fertility traits when compared to the EAZ. However, the EAZ was rated higher with respect to adaptation traits. The breeding objective traits of primary importance were high milk yield and big body size, good reproductive efficiency and relatively good adaptation to local production conditions. Performance and functional traits are important breeding goals that play a major role in fulfilling the multiple production objectives. This forms the basis for the optimisation of a breeding programme for sustainable utilisation to meet the needs of Sahiwal cattle producers.     

First molecular identification of Mycoplasma ovis and 'Candidatus M. haemoovis' from goat, with lack of haemoplasma PCR-positivity in lice

In order to investigate haemotropic Mycoplasma (formerly Eperythrozoon) infection of goats, blood samples and blood-sucking lice (Linognathus stenopsis) were collected in two goat herds. DNA was extracted from 20 blood samples and from 49 lice allocated to six pools according to host individuals. Haemoplasma infection was detected in four goats by real-time PCR. From the sample with the highest bacterial load the simultaneous presence of M. ovis and 'Candidatus M. haemoovis' was demonstrated by cloning and sequencing. Louse pools were haemoplasma negative, including those from bacteraemic animals. However, not only were Anaplasma inclusion bodies seen in blood smears from goats, but relevant PCR-positivity was also detected among lice. This is the first report of a molecular investigation on caprine haemoplasmas, including analysis of their bloodsucking lice. In summary, goats are susceptible to both molecularly characterised ovine haemoplasmas. On the other hand, goat sucking lice (L. stenopsis) do not appear to be potential vectors of these agents.     

Anti-hyperglycemic action of apigenin-6-C-β-fucopyranoside from Averrhoa carambola

A stimulatory effect of apigenin-6-C-β-fucopyranoside (1) on glucose uptake was observed when rat soleus muscle was incubated with 1, 10 and 100μM of this flavonoid glycoside. The presence of specific insulin signaling inhibitors, such as wortmannin, an inhibitor of phosphoinositide 3-kinase (PI3K), RO318220, an inhibitor of protein kinase C (PKC), PD98059, an inhibitor of mitogen-activated protein kinase (MEK), and HNMPA(AM)(3), an insulin receptor tyrosine kinase activity inhibitor showed that apigenin-6-C-β-fucopyranoside triggers different metabolic pathways in skeletal muscle. The oral administration of crude extract, fractions and isolated flavonoids (apigenin-6-C-β-fucopyranoside (1) and apigenin-6-C-(2″-O-α-rhamnopyranosyl)-β-fucopyranoside (2)) from Averrhoa carambola leaves exhibited a potential hypoglycemic activity in hyperglycemic normal rats. Additionally, both flavonoids significantly increased the muscle and liver glycogen content after an acute treatment. The results indicate that A. carambola can be regarded as a potent antihyperglycemic agent with insulin secretagogue and insulin mimetic properties.     

Temporal stability of vigor in rubber tree genotypes in the pre- and post-tapping phases using different methods

Vigor is important in rubber tree cropping because of its association with early latex exploitation, resistance to wind breakage and wood production. The objective of the present study was to assess the vigor stability of 25 rubber tree genotypes in the pre- and post-tapping phases using different methods. A randomized block design was used with three replications and six plants per plot. Seven annual trunk girth increments were used in the pre-tapping and six in the post-tapping phases. Stability was assessed by the methods by Wricke, Eberhart and Russell, Lin and Binns, and the AMMI statistical model (Model Additive Main Effects and Multiplicative Interaction). The association among the different stability parameters ωι, , Pi, and IPCA 1 was verified by the Spearman correlation. Joint ANOVA showed highly significant effects for genotypes, years, and genotypes × years interaction in the two phases. In the pre-tapping phase, the IAC 311 genotype was stable in all the methods and in the post-tapping presented stability in Eberhart and Russell, Wricke, and AMMI. In the post-tapping phase, the IAC 312 genotype was stable in Eberhart and Russell, AMMI and Lin and Binns. While in the pre-tapping the correlations were positive and significant among all the parameters, in the post-tapping it only occurred between ωι with and ωι with IPCA 1. In the stability assessment of rubber tree vigor, the association among the methods depended on the assessment period. Stability methods based on different principles can show agreement in identifying stable genotypes in rubber tree vigor. The tapping procedure affected vigor stability of rubber trees.     

Evaluation of recombinant human thyroid-stimulating hormone to test thyroid function in dogs suspected of having hypothyroidism

OBJECTIVE: To evaluate the use of recombinant human (rh) thyroid-stimulating hormone (TSH) in dogs with suspected hypothyroidism. ANIMALS: 64 dogs with clinical signs of hypothyroidism. PROCEDURES: Dogs received rhTSH (75 microg/dog, IV) at a dose independent of their body weight. Blood samples were taken before and 6 hours after rhTSH administration for determination of total serum thyroxine (T(4)) concentration. Dogs were placed into 1 of 3 groups as follows: those with normal (ie, poststimulation values indicative of euthyroidism), unchanged (ie, poststimulation values indicative of hypothyroidism; no thyroid gland stimulation), or intermediate (ie, poststimulation values between unchanged and normal values) post-TSH T(4) concentrations. Serum canine TSH (cTSH) concentration was determined in prestimulation serum (ie, before TSH administration). RESULTS: 14, 35, and 15 dogs had unchanged, normal, and intermediate post-TSH T(4) concentrations, respectively. Basal T(4) and post-TSH T(4) concentrations were significantly different among groups. On the basis of basal serum T(4) and cTSH concentrations alone, 1 euthyroid (normal post-TSH T(4), low basal T(4), and high cTSH concentrations) and 1 hypothyroid dog (unchanged post-TSH T(4) concentration and low to with-in reference range T(4) and cTSH concentrations) would have been misinterpreted as hypothyroid and euthyroid, respectively. Nine of the 15 dogs with intermediate post-TSHT(4) concentrations had received medication known to affect thyroid function prior to the test, and 2 of them had severe nonthyroidal disease. CONCLUSIONS AND CLINICAL RELEVANCE: The TSH-stimulation test with rhTSH is a valuable diagnostic tool to assess thyroid function in selected dogs in which a diagnosis of hypothyroidism cannot be based on basal T(4) and cTSH concentrations alone.     

Development of a multiplex PCR assay for polymorphism analysis of Brucella suis biovars causing brucellosis in swine

Swine brucellosis is caused by the biovars 1, 2 and 3 of Brucella suis the identification of which up to now relies on microbiological tests lacking adequate specificity together with time consuming and expensive molecular procedures. Based on sequence variation of the omp2b gene, we have developed a four primer set multiplex PCR assay that was tested for polymorphism analysis of B. suis biovars causing brucellosis in swine. The assay exploits the single nucleotide polymorphisms found in omp2b gene of B. suis reference biovars which are conserved in 43 B. suis field isolates from different geographic origins and hosts. Three specific amplification patterns (S1, S2 and S3) were obtained for reference strains of B. suis biovars 1, 2 and 3, respectively. However, some B. suis field isolates identified as biovars 2 or 3 according AMOS-PCR, PCR-RFLP of omp31 and omp2 genes and classical bacteriological methods, resulted also in S1 patterns, limiting the typing usefulness of the method.