Characterization of phosphate solubilizing fluorescent pseudomonads from the rhizosphere of Aloe vera (L.)

Soil phosphorous (P) deficiency is a major constraint to plant production which is overcome by adding inorganic-phosphate as chemical fertilizers. Fluorescent pseudomonads are the diverse group of bacteria able to mobilize sparingly soluble phosphate form. Total three hundred seven fluorescent Pseudomonas isolates were obtained from the Aloe barbadensis (Miller) rhizosphere. These Pseudomonas strains were further evaluated in vitro for their ability to solubilize phosphate and to produce indole acetic acid (IAA), hydrogen cyanide (HCN), siderophore and 1-aminocyclopropane 1- carboxylate (ACC) deaminase. Fifty three (36.8%) isolates produced IAA and 52 (36.1%) isolates produced siderophores whereas 36 (25.0%) and 31 (21.5%) isolates produced HCN and ACC deaminase, respectively. A positive correlation existed between siderophore and ACC deaminase producers. Cluster analysis showed rhizosphere as the major factor influencing the ecological distribution and physiological characterization of phosphate solubilizing bacteria (PSB). Based on partial 16S rRNA gene sequencing PSB were identified as Pseudomonas putida, Pseudomonas sp. and Pseudomonas plecoglossicida with highest phosphate solubilization ability. In conclusion, these phosphate solubilizing fluorescent pseudomonads would help in understanding their role in phosphorus solubilization and identification of potent phosphorus solubilizers from the rhizosphere of commercially grown A. barbadensis.     

Electrophoretic variation in seed proteins and interrelationships of species in the genus <Emphasis Type="Italic">Oryza</Emphasis>

Comparative studies of two cultivated and sixteen wild species of the genus Oryza were carried out using one- and two-dimensional gel electrophoresis for variation in their seed proteins for interrelationships of these species. A number of polypeptides in the range of molecular weight 13–110 kDa were seen to vary. Under reducing conditions, polypeptides spread over the regions of mol. wt. 33–40.5, 25–27 and 19–21.5 kDa exhibited maximum variation in their patterns. Two-dimensional gel electrophoresis revealed the occurrence of disulphide-linked glutelin polypeptide pairs of mol. wt. 60, 58, 52 and 25 kDa breaking into a large and a small subunit each in the range of mol. wt. 18–40.5 and 16–25 kDa respectively in Oryza sativa. The number of such polypeptide pairs varied from 2 to 6 in different species and also in O. sativa showed variation in mol. wts. of their constituent subunits. The UPGMA dendrogram revealed that most of the Oryza species occurred in different clusters and subclusters and thus did not share very close relationships. The undisputed and closest relationship observed was that of cultivated rice O. sativa with the O. rufipogon followed by that with O. nivara. The African cultivated O. glaberrima occurring on the nearest branch of the same subcluster, thereby, supporting the phylogenetic of these species suggested in earlier studies. Eight diploid species and seven tetraploid species were included in one part of the dendrogram while the remaining two species with AA genome i.e. O. glumaepatula and O. meridionalis and one with FF i.e. O. brachyantha stood separately from these as scattered in the group of seven tetraploid species with BBCC, CCDD and HHJJ genomes. The tetraploids O. alta, O. latifolia and O. grandiglumis with CCDD genomes which occurred on the farthest part were distantly related with O. sativa. The cyanogen bromide peptide maps and two dimensional gel electrophoresis also supported the closest relationship between O. sativa and O. rufipogon.     

Long‐term effects of fertilization on some soil properties under rainfed soybean‐wheat cropping in the Indian Himalayas

This study aims to examine the effects of long‐term fertilization and cropping on some chemical and microbiological properties of the soil in a 32 y old long‐term fertility experiment at Almora (Himalayan region, India) under rainfed soybean‐wheat rotation. Continuous annual application of recommended doses of chemical fertilizer and 10 Mg ha^–1 FYM on fresh‐weight basis (NPK + FYM) to soybean (Glycine max L.) sustained not only higher productivity of soybean and residual wheat (Triticum aestivum L.) crop, but also resulted in build‐up of total soil organic C (SOC), total soil N, P, and K. Concentration of SOC increased by 40% and 70% in the NPK + FYM–treated plots as compared to NPK (43.1 Mg C ha^–1) and unfertilized control plots (35.5 Mg C ha^–1), respectively. Average annual contribution of C input from soybean was 29% and that from wheat was 24% of the harvestable aboveground biomass yield. Annual gross C input and annual rate of total SOC enrichment from initial soil in the 0–15 cm layer were 4362 and 333 kg C ha^–1, respectively, for the plots under NPK + FYM. It was observed that the soils under the unfertilized control, NK and N + FYM treatments, suffered a net annual loss of 5.1, 5.2, and 15.8 kg P ha^–1, respectively, whereas the soils under NP, NPK, and NPK + FYM had net annual gains of 25.3, 18.8, and 16.4 kg P ha^–1, respectively. There was net negative K balance in all the treatments ranging from 6.9 kg ha^–1 y^–1 in NK to 82.4 kg ha^–1 y^–1 in N + FYM–treated plots. The application of NPK + FYM also recorded the highest levels of soil microbial‐biomass C, soil microbial‐biomass N, populations of viable and culturable soil microbes.     

RAPD and ISSR fingerprinting in cultivated chickpea (<Emphasis Type="Italic">Cicer arietinum</Emphasis> L.) and its wild progenitor <Emphasis Type="Italic">Cicer reticulatum</Emphasis> Ladizinsky

Detection of genetic relationships between 19 chickpea cultivars and five accessions of its wild progenitor Cicer reticulatum Ladizinsky were investigated by using RAPD and ISSR markers. On an average, six bands per primer were observed in RAPD analysis and 11 bands per primer in ISSR analysis. In RAPD, the wild accessions shared 77.8% polymorphic bands with chickpea cultivars, whereas they shared 79.6% polymorphic bands in ISSR analysis. In RAPD analysis 51.7% and 50.5% polymorphic bands were observed among wild accessions and chickpea cultivars, respectively. Similarly, 65.63% and 56.25% polymorphic bands were found in ISSR analysis. The dendrogram developed by pooling the data of RAPD and ISSR analysis revealed that the wild accessions and the ICCV lines showed similar pattern with the dendrogram of RAPD analysis. The ISSR analysis clearly indicated that even with six polymorphic primers, reliable estimation of genetic diversity could be obtained, while nearly 30 primers are required for RAPD. Moreover, RAPD can cause genotyping errors due to competition in the amplification of all RAPD fragments. The markers generated by ISSR and RAPD assays can provide practical information for the management of genetic resources. For the selection of good parental material in breeding programs the genetic data produced through ISSR can be used to correlate with the relationship measures based on pedigree data and morphological traits to minimize the individual inaccuracies in chickpea.     

Accumulation of bioactive compounds during growth and development of mango ginger (Curcuma amada Roxb.) rhizomes

Accumulation of bioactive compounds and storage components during developmental stages of mango ginger ( Curcuma amada Roxb.) rhizome was investigated from 60 to 240 days, as a function of physiological maturity. Four distinct developmental phases were defined, namely, vegetative phase (up to 60 days from planting), initiation and development phase (60-150 days), maturation phase (150-180 days), and senescence phase (180 days). Difurocumenonol, a bioactive terpenoid compound and phenolics were identified as biomarkers, to determine the optimum physiological maturity to harvest mango ginger rhizome. Accumulation of phenolics was observed in newly initiated rhizomes (after 60 days from planting). The phenolic content was high in mango ginger pulp compared to its juice. Newly initiated rhizome contained no difurocumenonol, and it was observed after 120 days after planting. Peak accumulation of phenolics, difurocumenonol, and total protein were noticed in 180 day old rhizome. Accordingly, the abundance of these components on 180 days was set as an optimum maturity standard for harvest of mango ginger rhizome, compared with a conventional harvest period that ranges from 200 to 240 days.     

Carbon sequestration and relationship between carbon addition and storage under rainfed soybean–wheat rotation in a sandy loam soil of the Indian Himalayas

Soil organic matter (SOM) contributes to the productivity and physical properties of soils. Although crop productivity is sustained mainly through the application of organic manure in the Indian Himalayas, no information is available on the effects of long-term manure addition along with mineral fertilizers on C sequestration and the contribution of total C input towards soil organic C (SOC) storage. We analyzed results of a long-term experiment, initiated in 1973 on a sandy loam soil under rainfed conditions to determine the influence of different combinations of NPK fertilizer and fertilizer + farmyard manure (FYM) at 10 Mg ha⁻¹ on SOC content and its changes in the 0–45 cm soil depth. Concentration of SOC increased 40 and 70% in the NPK + FYM-treated plots as compared to NPK (43.1 Mg C ha⁻¹) and unfertilized control plots (35.5 Mg C ha⁻¹), respectively. Average annual contribution of C input from soybean (Glycine max (L.) Merr.) was 29% and that from wheat (Triticum aestivum L. Emend. Flori and Paol) was 24% of the harvestable above-ground biomass yield. Annual gross C input and annual rate of total SOC enrichment were 4852 and 900 kg C ha⁻¹, respectively, for the plots under NPK + FYM. It was estimated that 19% of the gross C input contributed towards the increase in SOC content. C loss from native SOM during 30 years averaged 61 kg C ha⁻¹ yr⁻¹. The estimated quantity of biomass C required to maintain equilibrium SOM content was 321 kg ha⁻¹ yr⁻¹. The total annual C input by the soybean–wheat rotation in the plots under unfertilized control was 890 kg ha⁻¹ yr⁻¹. Thus, increase in SOC concentration under long-term (30 years) rainfed soybean–wheat cropping was due to the fact that annual C input by the system was higher than the required amount to maintaining equilibrium SOM content.     

How good are managed forests at conserving native woodpecker communities? A study in sub-Himalayan dipterocarp forests of northwest India

We assessed the impact of forest management on woodpecker community structure sub-Himalayan dipterocarp sal (Shorea robusta) forests. We selected eight sites representing four management-based ‘forest types’ (natural unworked sal, old- and young managed sal, and teak plantations). At each site, bird surveys were conducted along 2-km-long transects, 20 times during breeding and non-breeding seasons. Habitat characteristics were enumerated using circular and belt plots. Species composition across forest types was compared using multi-response permutation procedures. Indicator analysis identified woodpecker species preferring particular forest types. Biomass, abundance, and mean species richness of woodpeckers were highest in natural sal, intermediate in managed sal, and lowest in teak. There were apparent differences in woodpecker densities between seasons. Densities were higher in breeding season than non-breeding season for natural sal, while the opposite was true for managed sal. Woodpecker species composition significantly differed across forest types. The four largest species, including grey-headed (Picus canus) and greater yellownape (Picus flavinucha) that were identified as indicators, predominated natural sal but were scarce in other types. At a broader level, mean species richness of woodpeckers strongly indicated mean richness of other avifauna during breeding season. Our study suggests that forest management has significantly altered the sub-Himalayan woodpecker community structure. Managed sal forests, particularly teak plantations, are largely unable to support the original woodpecker assemblage during breeding season, although they provide foraging grounds during non-breeding season.     

Labile soil organic carbon,soil fertility,and crop productivity as influenced by manure and mineral fertilizers in the tropics

In recent years, organic agriculture has been receiving greater attention because of the various problems like deterioration in soil health and environmental quality under conventional chemical‐intensive agriculture. However, little information is available on the comparative study related to the impact of use of mineral fertilizers and organic manures on the soil quality and productivity. A long‐term field experiment was initiated in 2001 to monitor some of the important soil‐quality parameters and productivity under soybean–wheat crop rotation. The treatments consisted of 0, 30, and 45 kg N ha^–1 for soybean and of 0, 120, and 180 kg N ha^–1 for wheat. The entire amount of N was supplied to both the crops through urea and farmyard manure (FYM) alone or in combination at 1:1 ratio. Results indicated that Walkley‐and‐Black C (WBC; chromic acid–oxidizable) exhibited a marginal increase under only organic treatments as compared to control treatment (without fertilizers and manure) after completion of five cropping cycles. In case of labile‐C (KMnO₄‐oxidizable) content in soil, relatively larger positive changes were recorded under organic, mixed inputs (integrated) and mineral fertilizers as compared to WBC. Maximum improvement in the values of C‐management index (CMI), a measure of soil quality was recorded under organic (348–362), followed by mixed inputs (268–322) and mineral fertilizers (198–199) as compared to the control treatment after completion of five cropping cycles. Similarly there was a substantial increase in KCl‐extractable N; in Olsen‐P; as well as in DTPA‐extractable Zn, Fe, and Mn under organic treatments. Although labile soil C positively contributed to the available N, P, K, Zn, Fe, and Mn contents in soil, it did not show any relationship with the grain yield of wheat. After completion of the sixth cropping cycle, organic treatments produced 23% and 39% lower grain yield of wheat as compared to that under urea‐treated plots. Relatively higher amount of mineral N in soil at critical growth stages and elevated N content in plant under mineral‐fertilizer treatments compared to FYM treatments were responsible for higher yield of wheat under mineral fertilizers.     

Immobilization of cadmium and zinc in soil by Al-montmorillonite and gravel sludge

We investigated the potential of montmorillonite, Al-montmorillonite and gravel sludge to immobilize polluting heavy metals in agricultural soil. Batch experiments showed that both Al-montmorillonite and montmorillonite immobilized zinc and cadmium. Zinc was bound specifically on Al-montmorillonite and became increasingly incorporated into the interlayer hydroxy-Al polymer, whereas there was no specific sorption on montmorillonite. Cadmium was bound on montmorillonite and Al-montmorillonite unspecifically by cation exchange, but there was no incorporation into the lattice. In pot experiments montmorillonite, Al-montmorillonite, or gravel sludge were added to a soil contaminated with zinc and cadmium. Increasing doses of these agents decreased the concentrations of NaNO₃-extractable zinc and cadmium. Aluminium-montmorillonite and gravel sludge were more efficient than montmorillonite in immobilizing both zinc and cadmium. Remobilization tests at pH between 4 and 5.5 showed that cadmium and zinc desorbed more easily from montmorillonite than from Al-montmorillonite. Gravel sludge application increased the buffer capacity of the contaminated soil substantially. The binding agents decreased zinc concentrations in red clover (Trifolium pratense), and gravel sludge also reduced the cadmium concentrations.     

Spatial Distribution of Surface Soil Acidity,Electrical Conductivity,Soil Organic Carbon Content and Exchangeable Potassium,Calcium and Magnesium in Some Cropped Acid Soils of India

Land degradation is a global problem. Best management of degraded land can be done by evaluating the spatial variability of soil properties including chemical properties of degraded land and mapping such variations. Since, a significant portion of arable land in India is chemically degraded due to soil acidity; the present study was conducted to study the spatial variability of soil acidity (pH), electrical conductivity (EC), soil organic carbon (OC) content, exchangeable potassium (K⁺), calcium (Ca²⁺) and magnesium (Mg²⁺) contents in some cropped acid soils of India. A total of four hundred (one hundred from each series) representative surface (0–0.15 m depth) soil samples were collected from arable soils representing four soil series namely Hariharapur, Debatoli, Rajpora and Neeleswaram situated in Orissa, Jharkhand, Himachal Pradesh and Kerala states of India, respectively, and were analyzed. Soil acidity (pH between 3.90 and 6.45) showed a low variability, in contrast to other soil properties, which showed moderate variability. The coefficients of variation varied from 32.4 to 74.3, 31.2 to 50.9, 45.6 to 100, 71.9 to 93.0 and 59.0 to 79.8% for EC (mean between 0.05 and 0.09 dS m⁻¹), OC (mean between 0.29 to 1.86%), exchangeable K⁺ (mean between 39.1 and 77.7 mg kg⁻¹), Ca²⁺ (mean between 148 and 293 mg kg⁻¹) and Mg²⁺ (mean between 111 and 191 mg kg⁻¹), respectively. Soil pH and OC content were positively and significantly correlated with exchangeable K⁺, Ca²⁺ and Mg²⁺ content. Geostatistical analysis revealed that the best fit models were gaussian, exponential and spherical for different soil properties with moderate to strong spatial dependency. Copyright © 2014 John Wiley & Sons, Ltd.