The evolutionary relationship between bere barley and other types of cultivated barley

Genetic Resources and Crop Evolution - We used genotyping-by-sequencing to investigate the evolutionary history of bere, the oldest barley variety still cultivated in Britain and possibly in all of...     

Diversity of <Emphasis Type="Italic">Trifolium ambiguum</Emphasis>—nodulating rhizobia from the lower Caucasus

Kura clover (Trifolium ambiguum M.B.) is a perennial rhizomatous forage legume whose use is currently limited by difficulties in its establishment in part attributable to nodulation problems and very specific rhizobial requirements. A limited number of Kura clover-nodulating rhizobial strains are currently available and many have a limited effectiveness. In this study, 128 rhizobia were isolated from four sites in the center of origin of Kura clover (i.e., two in Azerbaijan, one in Armenia, and one in Northwest Iran) using the three ploidy levels of Kura clover (diploid, tetraploid, and hexaploid), red clover (Trifolium pratense L.), and white clover (Trifolium repens L.) plants as trap hosts. Rhizobia were fingerprinted using repetitive extragenic palindromic polymerase chain reaction (BOXA1R primer) and their genetic diversity was measured using the Shannon-Weaver diversity index. The nodulation specificity and phenotypic diversity of a subset of 13 isolates was determined. Genetic diversity among the 128 isolates was large and similar for rhizobia grouped according to their geographic origin or original host plant. Phenotypic diversity was significant; percentage of similarity among 13 isolates ranging between 38 and 92%. Nodulation specificity of the Kura clover-nodulating rhizobial isolates studied was less complex and not as clearly delineated as previously reported. Some strains originally isolated from Kura clover could effectively nodulate more than one ploidy level of Kura clover and even one or both of two other Trifolium species (i.e., red clover and white clover). Three strains formed effective nodules on both Kura clover and white clover; however, none promoted plant growth of both species to levels currently obtained with commercial inoculants when evaluated in a growth chamber. Rhizobial isolates that are highly effective with both species have yet to be identified.     

Effect of two species of cyanobacteria as biofertilizers on some metabolic activities, growth, and yield of pea plant

Two cyanobacterial species (Nostoc entophytum and Oscillatoria angustissima) were tested as biofertilizers, substituting the normally used chemical fertilizer, for pea plant. Inoculation of soil with a suspension of each species or a combination of the two species significantly increased the germination percentage and stimulated the other measured growth parameters and photosynthetic pigment fractions of pea. However, the soil inoculation with one cyanobacterial species and the addition of the recommended dose or half the recommended dose of chemical fertilizer were usually more effective and also increased carbohydrate and protein contents of produced pea seeds. However, biofertilization combined with half the recommended dose of the chemical fertilizer was usually more effective than the addition of the full rate of the chemical fertilizer, and this may allow saving 50% of the used chemical fertilizer. The protein profile of the produced seeds showed appearance and disappearance of some protein bands in response to fertilization treatments compared to the control. Blue green algae analyses show that N. entophytum fixed more N, produced more exopolysaccharide, and contained more auxin and cytokinin than O. angustissima, the latter contained more gibberellins. These data may explain their different influences on growth and yield of pea.     

The Structure of Bacterial and Fungal Communities in the Rhizosphere and Root-Free Loci of Gray Forest Soil

Eurasian Soil Science - The taxonomic composition, abundance, and diversity of bacterial and fungal communities in the rhizosphere loci and bulk mass of the gray forest soil (Eutric Retisol...     

Dryland cropping systems influence the microbial biomass and enzyme activities in a semiarid sandy soil

Indicators of soil quality, such as microbial biomass C and N (MBC, MBN) and enzyme activities (EAs), involved in C, P, N, and S cycling, as affected by dryland cropping systems under conventional (ct) and no tillage (nt) practices were evaluated for 5?years. The soil is sandy loam with an average of 16.4% clay, 67.6% sand, and 0.65?g kg^?1 OM at 0?C10?cm. The crops evaluated were rotations of grain sorghum (Sorghum bicolor L.) or forage sorghum (also called haygrazer), cotton (Gossypium hirsutum), and winter rye (Secale cereale): grain sorghum?Ccotton (Sr_g?CCt), cotton?Cwinter rye?Csorghum (Ct?CRye?CSr_g), and forage sorghum?Cwinter rye (Sr_f?CRye). The tillage treatments did not affect soil MB and EAs of C cycling (i.e., ??-glucosidase, ??-glucosaminidase, ??-galactosidase), P cycling (alkaline phosphatase, phosphodiesterase), and S cycling (arylsulfatase)??except for separation due to tillage for Sr_f?CRye and Ct?CRye?CSr_g observed in PCA plots when all EAs were evaluated together. After 3?years, rotations with a winter cover crop history (Ct?CRye?CSr_g and Sr_f?CRye) enhanced soil MBN (up to 63%) and EAs (21-37%) compared to Sr_g?CCt. After 5?years, Sr_g?CCt and Ct?CRye?CSr_g showed similar soil MBC, MBN, EAs, total carbon (TC), and organic carbon (OC). A comparison of Sr_g?CCt plots with nearby continuous cotton (Ct?CCt) research plots in the same soil revealed that it took 5?years to detect higher TC (12%), MBC (38%), and EAs (32?C36%, depending on the enzyme) under Sr_g?CCt. The significant improvements in MB and EAs found, as affected by dryland cropping systems with a history of winter cover crops and/or higher biomass return crops than cotton, can represent changes in soil OM, nutrient cycling, and C sequestration for sandy soils in the semiarid Texas High Plains region. It is significant that these soil changes occurred despite summer crop failure (2003 and 2006) and lack of winter cover crops (2006) due to lack of precipitation in certain years.     

Biological activity of peanut (Arachis hypogaea) phytoalexins and selected natural and synthetic Stilbenoids

The peanut plant (Arachis hypogaea L.), when infected by a microbial pathogen, is capable of producing stilbene-derived compounds that are considered antifungal phytoalexins. In addition, the potential health benefits of other stilbenoids from peanuts, including resveratrol and pterostilbene, have been acknowledged by several investigators. Despite considerable progress in peanut research, relatively little is known about the biological activity of the stilbenoid phytoalexins. This study investigated the activities of some of these compounds in a broad spectrum of biological assays. Since peanut stilbenoids appear to play roles in plant defense mechanisms, they were evaluated for their effects on economically important plant pathogenic fungi of the genera Colletotrichum, Botrytis, Fusarium, and Phomopsis. We further investigated these peanut phytoalexins, together with some related natural and synthetic stilbenoids (a total of 24 compounds) in a panel of bioassays to determine their anti-inflammatory, cytotoxic, and antioxidant activities in mammalian cells. Several of these compounds were also evaluated as mammalian opioid receptor competitive antagonists. Assays for adult mosquito and larvae toxicity were also performed. The results of these studies reveal that peanut stilbenoids, as well as related natural and synthetic stilbene derivatives, display a diverse range of biological activities.     

Quantification of the mycotoxin patulin by a stable isotope dilution assay.

Two stable isotope dilution assays for the quantification of patulin [4-hydroxy-4H-furo[3,2-c]pyran-2(6H)-one] in foods were developed using (13)C-labeled patulin as the internal standard. One method was performed by means of LC/MS in negative electrospray ionization mode without derivatization; the other used HRGC/HRMS after trimethylsilylation of the patulin isotopomers. In comparison with previously reported methods based on high-performance liquid chromatography with UV detection, HRGC/HRMS of the derivatized samples showed better repeatability, higher recovery rates (96% at a spike level of 200 ng/L), and a 100 times lower detection limit (12 ng/L). In contrast, LC/MS showed a much lower performance as compared to HPLC/UV or HRGC/HRMS. Using HRGC/HRMS, the mycotoxin was quantified in many different fruit products and in molded wheat bread.     

Mechanism and molecular markers associated with rust resistance in a chickpea interspecific cross (Cicer arietinum × Cicer reticulatum)

A gene that controls resistance to chickpea rust (Uromyces ciceris-arietini) has been identified in a recombinant inbred line (RIL) population derived from an interspecific cross between Cicer arietinum (ILC72) × Cicer reticulatum (Cr5-10), susceptible and resistant to rust, respectively. Both parental lines and all RILs displayed a compatible interaction but differed in the level of infection measured as Disease Severity (DS) and Area Under the Disease Progress Curve (AUDPC). Histological studies of the seedlings of resistant parental Cr5-10 line revealed a reduction in spore germination, appressorium formation, number of haustoria per colony and colony size, with little host cell necrosis, fitting the definition of partial resistance. A Quantitative Trait Locus (QTL) explaining 31% of the total phenotypic variation for DS in seedlings and 81% of the AUDPC in adult plants in the field was located on linkage group 7 of the chickpea genetic map. The AUDPC displayed a bimodal distribution with high frequency of susceptible lines and both the AUDPC and markers showed the same distorted segregation. Consequently, it was hypothesised that a single dominant gene (proposed as Uca1/uca1) controlled resistance to rust in adult plants. This allowed us to locate the gene on the genetic linkage map. Two Sequence Tagged Microsatellite Sites (STMS) markers, TA18 and TA180 (3.9 cM apart) were identified that flank the resistance gene. These findings could be the starting point for a Marker-Assisted Selection (MAS) programme for rust resistance in chickpea.