Numerical modelling of moisture movement and related stress field in lime wood subjected to changing climate conditions

Numerical modelling was used to follow the evolution of the moisture content gradient and the stress field resulting from the restrained differential dimensional response across a wooden cylinder, simulating sculptures, in response to variations in temperature (T) and relative humidity (RH). Material properties of lime wood (Tilia sp.) were used in the modelling as this wood species was historically widely used. The allowable RH variations, below which mechanical damage will not occur, were derived as functions of the amplitude, time period and starting RH level of the variation. Lime wood can endure step RH variations of up to 15% in the moderate RH region, but the allowable domain narrows when RH levels shift from the middle range. The allowable amplitude of the variations increases when time allowed for the change increases. The stress field does not vanish even for slow, quasi-static changes in RH due to structural internal restraint resulting from the anisotropy in the moisture-related dimensional change.     

Temperature‐responsive genetic loci in pectinolytic plant pathogenic Dickeya solani

Fifty‐four Dickeya solani thermoregulated genes were identified using Tn5 transposon mutagenesis with an inducible gusA reporter system; 45 genes were up‐regulated at 37 °C, whereas nine were up‐regulated at 18 °C. The relative level of gene up‐regulation ranged from 2–1200 and 5–650 U/mg total proteins at 18 and 37 °C, respectively. Among the temperature‐regulated loci, genes coding for proteins involved in fundamental bacterial metabolism, membrane‐related proteins and pathogenicity‐corresponding factors and several hypothetical unknown proteins were found. The mutants were tested for their pathogenicity in planta and for features known to be important for D. solani virulence viz. production of pectinolytic enzymes, cellulases, proteases, siderophores and auxins as well as for motility and the ability to form a biofilm. Eight Tn5 mutants, four up‐regulated at high and four up‐regulated at low temperature, expressed visible phenotypes including the decreased ability to cause symptoms on potato tubers and chicory leaves, impairment in phospholipase production and/or deficiency in biofilm formation. The implications of environmental temperature on the ability of D. solani to cause disease symptoms in potato are discussed.     

Genetic relationships among resynthesized,semi-resynthesized and natural <Emphasis Type="Italic">Brassica napus</Emphasis> L. genotypes

The allopolyploidization event that created cultivated oilseed rape Brassica napus L, followed by intense breeding, reduced its genetic diversity. Resynthesized (RS) B. napus L. obtained by interspecific hybridization between genotypes of B. rapa L. and B. oleracea L. can be a valuable source for broadening genetic diversity in cultivated oilseed rape. In this study, we determined the extent of DNA polymorphism among natural accessions of oilseed rape, resynthesized B. napus, their parental species and double-low quality semi-RS lines carrying the Rfo gene. Using 10 selected primer combinations, 522 polymorphic AFLP markers were scored in the complete set of 100 Brassica sp. To detect relationships between these genotypes, a cluster analysis was performed using the Jaccard’s distance. Resynthesized allopolyploids clustered directly between their diploid parents. Cultivated accessions of oilseed rape created a compact group away from resynthesized allopolyploids as well as semi-RS lines. The natural oilseed rape group, which consists of 49 cultivars and breeding lines of oilseed rape, is characterized by lower genetic diversity than the group of 33 accessions of resynthesized oilseed rape, and the analysis showed that the double-low quality semi-RS lines represent a specific genetic variation of B. napus. The de novo resynthesized B. napus lines and the semi-RS lines of double-low quality generated from them, provide a significant opportunity for enrichment the gene pool of oilseed rape.     

Mapping of the <Emphasis Type="Italic">ms8</Emphasis> male sterility gene in sweet pepper (<Emphasis Type="Italic">Capsicum annuum</Emphasis> L.) on the chromosome P4 using PCR-based markers useful for breeding programmes

The nuclear male sterility gene ms8 is expected to facilitate the production of sweet pepper (Capsicum annuum L.) hybrids as it provides means for hybridization without the labor-intensive hand emasculation of female inbred lines. The development of molecular markers linked to ms8 locus will help the breeding practice for the selection of hybrid parental lines. In this study, F₂ population resulting from a cross between the sweet pepper male sterile line 320 and the male fertile variety Elf was used to identify DNA markers linked to the ms8 locus. With the use of RAPD–BSA technique, seven markers linked to the ms8 locus were found. Four of them were converted into SCAR markers. In addition, two COSII/CAPS markers linked to the ms8 locus were identified. Comparative mapping with reference pepper maps indicated that the ms8 locus is located on the lower arm of the pepper chromosome P4. Identified markers are useful for molecular breeding, however, at present markers tightly linked to ms8 locus are still lacking. Identification of molecular markers linked to the ms8 locus and determination of its chromosomal localization are useful for fine mapping and also provide the perspective for ms8 gene cloning.     

Breeding value of selected blackcurrant (<Emphasis Type="Italic">Ribes nigrum</Emphasis> L.) genotypes for early-age fruit yield and its quality

The study was conducted in the years from 2011 to 2013 at the Research Institute of Horticulture in Skierniewice, Poland. The aim of the research was to assess the breeding value, based on the effects of general and specific combining abilities (GCA and SCA), of 15 parental genotypes of blackcurrant in terms of fruit yield and quality. The plant material consisted of F₁ generation seedlings obtained by crossing, in a factorial mating design of twelve maternal (‘Bona’, ‘Big Ben’, ‘Chereshnieva’, Kupoliniai’, ‘Gofert’, ‘Tines’, ‘Sofievskaia’, ‘Tihope’, ‘Ores’, ‘Ruben’, ‘Titania’ and D13B/11) and three paternal cultivars (‘Ceres’, ‘Foxendown’ and ‘Saniuta’). It was found that the cultivars ‘Ruben’, ‘Big Ben’, ‘Gofert’ and D13B/11 had significant positive effects of GCA on fruit yield at least in two consecutive years. ‘Ruben’, ‘Saniuta’ and D13B/11 had positive GCA effects on fruit weight. For ‘Chereshnieva’, ‘Gofert’, ‘Tines’, ‘Sofievskaia’, ‘Tihope’, ‘Titania’, ‘Ceres’ and Saniuta’ positive GCA effects were estimated for soluble solids content, whereas ‘Ruben’, ‘Ceres’, ‘Gofert’ and ‘Ores’ had positive GCA effects on the ascorbic acid content in fruit. This indicated a high breeding value of these parental genotypes in terms of the evaluated traits. The significantly positive values of SCA, estimated for the crossing combinations: ‘Big Ben’?×?‘Saniuta’, ‘Ruben’?×?‘Foxendown’, ‘Titania’?×?‘Ceres’, ‘Kupoliniai’?×?‘Saniuta’, ‘Gofert’?×?‘Foxendown’, ‘Gofert’?×?‘Saniuta’, ‘Tines’?×?‘Ceres’ and ‘Tihope’?×?‘Foxendown’ for at least two traits describing fruit yield and quality, were evidence of the interaction of both these parental genotypes in the creation of new dessert-type cultivars of blackcurrant.     

Modelling of the effect of dry periods on yielding of spring barley

The paper presents a weather-yield model developed for the purpose of estimating spring barley yield on the basis of dry spells occurring in individual periods between the phenological phases of that plant. For that purpose research material on spring barley, originating from the years 1976-1997, was used as well as diurnal sums of precipitation. Five periods were considered in the analysis: sowing-emergence, emergence-tillering, tillering-heading, heading-milk ripeness and milk ripeness-full ripeness. In the study a model of changes in the amount of water available for plant during rainless periods was used. Five measures were adopted for characterisation of the approximation error: correlation coefficient, mean relative error, relative root mean square error, model efficiency and coefficient of residual mass. The analyses performed demonstrated that yield reduction is significantly influenced by rainless periods that occur in the sowing-emergence and tillering-heading inter-phase periods. The adopted criteria for yield reduction estimation show considerable similarity for the emergence-tillering and heading-milk ripeness inter-phase periods. At the same time, their influence on yield reduction is three-fold lower than during the sowing-emergence and tillering-heading inter-phase periods. Analyses performed with the use of the developed model indicate that yield size is affected by rainless periods of duration longer than 30% of the inter-phase period.     

Predicting the Concentration of Total Mercury in Mineral Horizons of Forest Soils Varying in Organic Matter and Mineral Fine Fraction Content

In this study, an artificial neural networks (ANN) model was developed to predict the removal of a polycyclic aromatic hydrocarbon (PAH), namely, naphthalene from marine oily wastewater by using UV irradiation. The removal rate was used as model output and simulated as a function of five independent input variables, including fluence rate, salinity, temperature, initial concentration and reaction time. The configuration of the ANN model was optimized as a three-layer feed-forward Levenberg–Marquardt backpropagation network with log-sigmoid and linear transfer functions at the hidden (12 hidden neurons) and output layers, respectively. By considering goodness-of-fit and cross validated predictability, the ANN model was trained to provide good overall agreement with experimental results with a slope of 0.97 and a correlation of determination (R ²) of 0.943. Sensitivity analysis revealed that fluence rate and temperature were the most influential variables, followed by reaction time, salinity and initial concentration. The findings of this study showed that neural network modeling could effectively predict the behavior of the photo-induced PAH degradation process.     

The effect of rhizobiophages on<Emphasis Type="Italic"> Sinorhizobium meliloti</Emphasis> -<Emphasis Type="Italic"> Medicago sativa</Emphasis> symbiosis

Using Tn5 mutagenesis of lysogenic Sinorhizobium meliloti strain L5–30 (L54), three neomycin-resistant transconjugants differing in phage-resistance profiles were isolated. Two of them increased the dry weight of plants and were capable of establishing root nodules, whereas the third one was ineffective. The bacterium-phage interaction did not have observable consequences in the Medicago sativa - S. meliloti symbiosis because it did not affect the number of nodules on M. sativa or plant dry weight.     

Plant P5C reductase as a new target for aminomethylenebisphosphonates

A series of N-substituted derivatives of aminomethylenebisphosphonic acid were evaluated as potential inhibitors of delta1-pyrroline-5-carboxylate reductase (EC 1.5.1.2), the enzyme that catalyzes the last step in proline biosynthesis, partially purified from Arabidopsis thaliana suspension cultured cells. At millimolar concentrations, three compounds out of 26 were found to interfere with the catalytic mechanism. One of them, namely, 3,5-dichloropyridyl-aminomethylenebisphosphonic acid, retained such inhibitory activity in the micromolar range. Kinetic analyses ruled out the possibility that the inhibition could simply rely upon the chelating properties of bisphosphonates and showed mechanisms of a noncompetitive type against NADH and an uncompetitive type against delta1-pyrroline-5-carboxylic acid, with KI values of 199 +/- 6 and 10.3 +/- 1.5 microM, respectively. A computer-aided docking analysis, performed on the basis of the crystal structure of the enzyme from Streptococcus pyogenes, suggested that this phosphonate may interact with amino acid residues near the binding site of delta1-pyrroline-5-carboxylic acid, thus blocking the substrate in a pocket and preventing its interaction with NADH. Because in higher plants the step catalyzed by delta1-pyrroline-5-carboxylate reductase is shared by all pathways leading to proline synthesis, such a compound may represent a lead structure to be exploited for the design of new substances endowed with herbicidal activity.