Molecular identification of arbuscular mycorrhizal fungal spores associated to the rhizosphere of Retama raetam in Tunisia

ABSTRACT

Arbuscular mycorrhizal fungi (AMF) are found in the soil of most ecosystems where they form mutualistic associations that affect plants growth. We have investigated the community structure of AMF associated to Retama raetam growing in five regions of Tunisia. The total number of spores was significantly different across sites, ranging from 633 to 1062 spores per 100 g dry soil. A dominance of small spores was revealed. The large subunit region of the rDNA of AMF spores associated to the rhizosphere of R. raetam was sequenced. Sequences clustered into 13 operational taxonomic units. Phylogenetic analysis revealed that the majority of sequences were grouped within Glomeraceae and Claroideoglomeraceae families. Only two sequences were affiliated to the Scutellospora genus. These results suggest the dominance of the genus Glomus in the soil rhizosphere of R. raetam. A correlation between phylogenetic analysis, soil chemicals properties, and AMF community richness was also detected.     

GIS Coop: networks of silvicultural trials for supporting forest management under changing environment

Key message

The diversity of forest management systems and the contrasted competition level treatments applied make the experimental networks of the GIS Coop, a nationwide testing program in the field of emerging forestry topics within the framework of the ongoing global changes.

Context

To understand the dynamics of forest management systems and build adapted growth models for new forestry practices, long-term experiment networks remain more crucial than ever.

Aims

Two principles are at the basis of the experimental design of the networks of the Scientific Interest Group Cooperative for data on forest tree and stand growth (GIS Coop): contrasted and extreme silvicultural treatments in diverse pedoclimatic contexts.

Methods

Various forest management systems are under study: regular and even-aged stands of Douglas fir, sessile and pedunculate oaks, Maritime and Laricio pines, mixed stands of sessile oak, European silver fir, and Douglas fir combined with other species. Highly contrasted stand density regimes, from open growth to self-thinning, are formalized quantitatively.

Results

One hundred and eighty-five sites representing a total of 1206 plots have been set up in the last 20 years, where trees are measured regularly (every 3 to 10 years). The major outputs of these networks for research and management are the calibration/validation of growth and yield models and the drawing up of forest management guides.

Conclusion

The GIS Coop adapts its networks so that they can contribute to develop growth models that explicitly integrate pedoclimatic factors and thus also contribute to research on the sustainability of ecosystems under environmental and socio-economic changes.

     

Why are wheat yields stagnating in Europe? A comprehensive data analysis for France

The last two decades are witnessing a decline in the growth trend of cereal yields in many European countries. The present study analyses yield trends in France using various sources of data: national and regional statistics, scattered trials, results of agroclimatic models using climatic data. Effects in genetic changes through breeding, agronomy and climate are investigated as possible causes. Our results show that genetic progress has not declined but it was partly counteracted, from 1990 on, by climate change which in general is unfavorable to cereal yields in temperate climates because of heat stress during grain filling and drought during stem elongation. We cannot however, from the decade beginning in 2000, rule out agronomic causes, related to policy and economy, in particular the decline of legumes in the cereal rotations, replaced by oilseed rape and to a lesser extent the decrease in nitrogen fertilization.     

West Nile virus and its emergence in the United States of America

Zoonotic West Nile virus (WNV) circulates in natural transmission cycles involving certain mosquitoes and birds, horses, humans, and a range of other vertebrates are incidental hosts. Clinical infections in humans can range in severity from uncomplicated WNV fever to fatal meningoencephalitis. Since its introduction to the Western Hemisphere in 1999, WNV had spread across North America, Central and South America and the Caribbean, although the vast majority of severe human cases have occurred in the United States of America (USA) and Canada. By 2002-2003, the WNV outbreaks have involved thousands of patients causing severe neurologic disease (meningoencephalitis and poliomyelitis-like syndrome) and hundreds of associated fatalities in USA. The purpose of this review is to present recent information on the epidemiology and pathogenicity of WNV since its emergence in North America.     

Animal poisoning in Europe. Part 2: Companion animals

This is the second in a series of three review articles on animal poisoning in Europe and focuses on cases in pet animals and horses in five European countries (Belgium, France, Greece, Italy and Spain) reported over the last decade. In the participating countries, dogs were the most commonly poisoned species, particularly younger animals. The majority of cases in companion animals resulted from exposure to insecticides, although rodenticides (especially anticoagulants and strychnine) posed a significant risk. In all five countries, horses and cats appeared to be more susceptible to plant toxins. Intoxications with herbicides, metals, household products and drugs for veterinary and human use were reported sporadically. The review demonstrates the importance of increased awareness so as to minimise poisoning episodes and emphasises the need to establish a European system for the recording of poisoning data.     

Impact of deer on temperate forest vegetation and woody debris as protection of forest regeneration against browsing

A 3-year field experiment with paired exclosure (fenced areas, excluding deer) and control plots (unfenced areas, free access to deer), with two treatments with and without woody debris, was carried out at two sites in a temperate forest in eastern France. The aim of the experiment was to assess the effect of browsing by roe deer (Capreolus capreolus) and red deer (Cervus elaphus) on the diversity and richness of plant species and to test the effectiveness of using woody debris to protect seedlings and saplings from deer browsing. In presence of deer, both plant species richness and diversity were reduced the first year of the study, but this negative impact of deer then disappeared after 3 years. Deer browsing mostly affected species composition of plant communities. We observed a decrease in the abundance of preferred species such as Carpinus betulus, Rubus fructicosus, Rubus idaeus, Anemone nemorosa and Epilobium angustifolium, and palatable species such as Acer spp., Carex spp., Festuca spp. and Mycelis muralis, whereas unpalatable species such as Lamium spp., or species particularly resilient to browsing such as grasses (Brachypodium spp. and Luzula spp.) increased in abundance. The use of woody debris as protection against browsing by deer did not limit damage to seedlings and saplings of the main commercially valuable species, Abies alba and Quercus spp. Instead of limiting deer impact, use of woody debris seemed to increase the negative effect of deer browsing on regeneration in control plots relatively to those without protection.     

Organic residue mass at planting is an excellent predictor of tree growth in Eucalyptus plantations established on a sandy tropical soil

Tropical plantation forests are meeting an increasing proportion of global wood demand and comprehensive studies assessing the impact of silvicultural practices on tree and soil functioning are required to achieve sustainable yields. The objectives of our study were: (1) to quantify the effects of contrasting organic residue (OR) retention methods on tree growth and soil nutrient pools over a full Eucalyptus rotation and (2) to assess the potential of soil analyses to predict yields of fast-growing plantations established on tropical sandy soils. An experiment was set up in the Congo at the harvesting of the first rotation after afforestation of a native herbaceous savanna. Six treatments were set up in 0.26 ha plots and replicated in 4 blocks, with OR mass at planting ranging from 0 to 46.5 Mg ha⁻¹. Tree growth over the whole rotation was highly dependent on OR management at planting. Over-bark trunk volume 7 years after planting ranged from 96 m³ ha⁻¹ in the treatment with forest floor and harvest residue removal at planting to 164 m³ ha⁻¹ in the treatment with the largest amount of OR. A comparison of nutrient stocks within the ecosystem at planting and at the end of the rotation suggested that nutrient contents in OR were largely involved in the different response observed between treatments. OR management treatments did not significantly modify most of the nutrient concentrations in the upper layers of the mineral soil. Conventional soil analyses performed before planting and at ages 1 and 3 years were unable to detect differences between treatments despite large differences in tree growth. In contrast, linear regressions between stand aboveground biomass at harvesting and OR mass at planting (independent variable) showed that OR mass was an excellent predictor of stand yield (R² = 0.99). A large share of soil fertility comes from organic material above the mineral soil in highly weathered sandy soils and OR mass at planting might be used in conjunction with soil analyses to assess the potential of these soils to support forest plantations.     

Comparison of harvested rate and nacre deposition parameters between cultured pearls issued from initial graft and second nucleus insertion in P. margaritifera

Cultured pearls produced with Pinctada margaritifera, using the surgreffe method (implantation of a second nucleus following pearl harvest) were studied for the first time to: (1) examine family effect on nacre thickness, nacre weight and nacre deposition speed and (2) compare variation in these three traits with that obtained from the cultured pearls previously harvested after the corresponding initial grafts. A surgreffe experiment using 783 recipient oysters was realized in Rangiroa atoll (French Polynesia). After 24 months of culture, 389 cultured pearls were harvested. Significant donor family effect was found for the harvested pearl rate from surgreffe (P = 0.046). Highly significant donor family effect was recorded for nacre thickness (P = 0.004). Very highly significant donor family effects were recorded for nacre weight and nacre deposition speed (P < 0.0001). Comparison between surgreffe and initial graft showed: (1) no significant effect for the average cultured pearl rate harvested (P = 0.052) and average cultured pearl nacre deposition speed (P = 0.622) and (2) very highly significant differences (P < 0.0001) for the average cultured pearl nacre thickness and nacre weight. This study highlighted three major implications for pearl industry management: (1) donor family effect was maintained from initial graft to surgreffe, for nacre thickness, weight and deposition speed, (2) the persistence of the pearl sac metabolic activity over three years of culture and (3) the relation between harvested pearl rate and the size of the nucleus inserted in the pearl sac.