Eucalypt plantations as habitat for birds on previously cleared farmland in south-eastern Australia

In parts of Australia, extensive areas of cleared land are now being planted with commercial plantations of native eucalypts. Questions arise about the extent to which such plantations can rectify previous loss of habitat and contribute to biodiversity conservation. This study assessed abundance of bird species (as one aspect of biodiversity) on 105 sites (25 cleared land, 58 plantations and 22 native forest) in two regions of rural Victoria, south-eastern Australia. Generalised linear modelling was used to assess some of the landscape and habitat variables that contributed to the value of plantation sites for particular groups of bird species. These models demonstrated the importance of on-site habitat variables in explaining the abundance of groups of bird species, with landscape context making small additional contributions.Mean abundance of forest and woodland birds was higher in eucalypt plantations than cleared farmland, and marginally lower than in native forest. Patterns differed between bird guilds. For example, insectivores that forage in the canopy and tall shrub layers were at least as common in plantations as in native forest, with birds in the latter group using young eucalypts as if they were tall shrubs. Birds that forage from open ground among trees were more common in plantations than native forest, and may benefit substantially from the new habitat fortuitously provided for them. This group includes several species that have declined in natural woodland habitats. Nectarivores, carnivores and birds that forage among low shrubs were less common in plantations than in native forest. Insectivores that forage from eucalypt bark made little use of plantations. Different approaches to plantation design and management would be needed to cater for groups such as these. Specific measures include planting of rough-barked eucalypts in addition to smooth-barked species, and provision of artificial hollows. Retention of existing remnants of native forest (e.g. old trees and forest patches) is a priority, to supply habitat elements that would otherwise be missing for long periods.     

Interplay between physical and predator landscapes affects transferability of shorebird distribution models

Coastal landscapes with extensive intertidal mudflats provide non-breeding habitat for Arctic shorebirds. Few attempts have been made to develop and test landscape-level models predicting the intertidal distribution of these birds. We modelled the distribution of a Holarctic species, Dunlin (Calidris alpina), at a hemispherically important non-breeding site, the Fraser River Delta, British Columbia, Canada, in seasons with different predator landscapes. We trained the models during a season when nocturnal predators were common and tested temporal transferability of the models on independent datasets when nocturnal predators were absent. Snowy Owls (Nyctea scandiaca) influenced Dunlin distribution and thus model transferability. After accounting for their presence, models displayed good to excellent discrimination, i.e. prediction of the instantaneous and cumulative (over low tide period) probability of mudflat use by Dunlin, in fore- and backcasting applications. Model calibration was good or else, where over-prediction was observed, the reason for the bias was identified. The distribution models may predict mudflat use by Dunlin and possibly related species given relevant data describing the intertidal landscape. The models are amenable to GIS application, describe the amount of use per hectare of the intertidal zone and can be used to determine and visualise relative and absolute suitability of intertidal areas. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Correlates of objectively measured physical activity in dogs

To increase physical activity (PA) levels in dogs and to better evaluate their energy requirements, there is a need to understand which factors or correlates are associated with PA and/or sedentary behaviour. Improving our understanding of these correlates also has implications for prescribed energy requirements in dogs. PA was measured using accelerometry in 62 dogs from two common breeds (Labrador retrievers and Cocker spaniels). Five potential correlates (age, sex, breed, neuter status, body condition score) were tested for associations with total volume of PA, light-moderate intensity PA, vigorous intensity PA and sedentary behaviour. Age and breed were associated with total volume of PA, light-moderate intensity PA and sedentary behaviour in the final models. Age was associated with vigorous intensity PA. The final models explained 60%, 40%, 63% and 44% of variance in total volume of PA, light-moderate intensity PA, vigorous intensity PA and sedentary behaviour, respectively. These results should improve understanding of the variation in energy requirements of dogs, as well as the development of age and breed-specific diets and the prevention and treatment of canine obesity.     

Susceptibility weighted imaging at 1.5 Tesla magnetic resonance imaging in dogs: Comparison with T2*‐weighted gradient echo sequence and its clinical indications

Susceptibility weighted imaging (SWI) is a high resolution, fully velocity‐compensated, three‐dimensional gradient echo (GE) MRI technique. In humans, SWI has been reported to be more sensitive than T2*‐weighted GE sequences in the identification of both intracranial hemorrhage and intra‐vascular deoxyhemoglobin. However, published clinical studies comparing SWI to T2*‐weighted GE sequences in dogs are currently lacking. The aim of this retrospective, observational study was to compare SWI and T2*‐weighted GE sequences in a group of dogs with intracranial disease. Medical records were searched for dogs that underwent a brain MRI examination that included T2*‐weighted GE and SWI sequences. The presence and appearance of non‐vascular and vascular signal voids observed on T2*‐weighted GE and SWI were compared. Thirty‐two dogs were included with the following diagnoses: presumed and confirmed intracranial neoplasia (27), cerebrovascular accidents (3), and trauma (2). Hemorrhagic lesions were significantly more conspicuous on SWI than T2*‐weighted GE sequences (P < .0001). Venous structures were well defined in all SWI sequences, and poorly defined in all dogs on T2*‐weighted GE. Susceptibility weighted imaging enabled identification of vascular abnormalities in 30 of 32 (93.8%) dogs, including: neovascularization in 19 of 32 (59.4%) dogs, displacement of perilesional veins in five of 32 (15.6%) dogs, and apparent dilation of perilesional veins in 10 of 32 (31.3%) dogs. Presence of neovascularization was significantly associated with T1‐weighted post‐contrast enhancement (P = .0184). Hemorrhagic lesions and venous structures were more conspicuous on SWI compared to T2*‐weighted GE sequences. Authors recommend adding SWI to standard brain protocols in dogs for detecting hemorrhage and identifying venous abnormalities for lesion characterization.     

A whole-genome association study of major determinants for host control of HIV-1

Understanding why some people establish and maintain effective control of HIV-1 and others do not is a priority in the effort to develop new treatments for HIV/AIDS. Using a whole-genome association strategy, we identified polymorphisms that explain nearly 15% of the variation among individuals in viral load during the asymptomatic set-point period of infection. One of these is found within an endogenous retroviral element and is associated with major histocompatibility allele human leukocyte antigen (HLA)-B*5701, whereas a second is located near the HLA-C gene. An additional analysis of the time to HIV disease progression implicated two genes, one of which encodes an RNA polymerase I subunit. These findings emphasize the importance of studying human genetic variation as a guide to combating infectious agents.     

Governance interactions in small‐scale fisheries market chains: Examples from the Asia‐Pacific

Small‐scale fisheries are subject to various governing institutions operating at different levels with different objectives. At the same time, small‐scale fisheries increasingly form part of domestic and international market chains, with consequent effects for marine environments and livelihoods of the fishery‐dependent. Yet there remains a need to better understand how small‐scale fisheries market chains interact with the range of governance institutions that influence them. In this paper, we examine how multiple governance systems function along market chains, in order to identify opportunities for improved multiscale governance. We use three small‐scale fisheries with varying local to global market chains operating in the Asia‐Pacific region to develop a framework for analysis. Drawing from Interactive Governance theory we identify governing systems that have come to operate at particular sections in each market chain. We recognize four institutions that shape the governance over the length of the chain; namely those centred on (a) government, (b) private sector and pricing, (c) decentralized multistakeholder management and (d) culture and social relations. The framework shows how diverse arrangements of these governing institutions emerge and take effect along market chains. In doing so, we seek to move away from prescribed “ideals” of universal governing arrangements for fisheries and their market chains, and instead illuminate how governing systems function interactively across multiple scales.     

Retention of acetaminophen in an in vitro model of solid-phase gastric emptying of animals

OBJECTIVE: To apply an in vitro model for assessment of the solid-phase binding capacity of acetaminophen and thus assess the reliability of this marker for evaluation of solid-phase gastric emptying in vivo in animals. SAMPLE POPULATION: 4 test meals. PROCEDURES: A spectrophotometric method for detection of acetaminophen was validated and applied for assessment of the percentage retention of acetaminophen in the solid phase of 4 test meals. The gastric milieu was simulated by incubating each meal in artificial gastric juice for 2 hours in a shaking water bath maintained at 37 degrees C. Solid-phase retention was then assessed 3 times by measuring the amount of acetaminophen that had leached into the liquid phase. RESULTS: Acetaminophen was poorly retained in the solid phase of all the test meals examined in the study. There was also a large degree of variability in the percentage retention for each meal when the experiment was repeated 3 times. CONCLUSIONS AND CLINICAL RELEVANCE: Analysis of the results of this in vitro study confirmed that acetaminophen may not be an appropriate marker of solid-phase gastric emptying. The acetaminophen gastric emptying test should be applied only for the assessment of liquid-phase emptying in animals.