Effects of probiotic bacteria on growth parameters and immune defence in Eurasian perch Perca fluviatilis L. larvae under intensive culture conditions

Two experiments were conducted to examine whether a mixture of bacteria composed of Bacillus licheniformis, Bacillus subtilis and Bacillus pumilus has a beneficial impact on survival, growth, lysozyme activity and total immunoglobulins (Ig) in perch larvae. In experiment 1, control fish were compared with fish receiving bacteria (4.93 × 10⁷ CFU L⁻¹ day⁻¹) through tank water or both through tank water and Artemia metanauplii enriched with two bacteria doses (2 × 10¹⁰ or 4 × 10¹⁰ CFU L⁻¹). Treatments were performed in 40 L triplicate tanks of 200 fish [initial body weight (IBW)=2.3 mg] each, placed in separated recirculating water systems. Experiment 2 evaluated the combining effects of bacteria feeding and densities (10 vs. 20 fish L⁻¹, IBW=9.5 mg). In both experiments, the bacteria added to live food or both live food and water induced higher growth rate at the highest dietary dose and this was associated with higher Ig levels on days 14 and 28. In experiment 2, higher survival was associated to lower type‐2 cannibalism (ingestion of whole prey) at the two dietary bacteria doses, and such positive effect was observed for fish fed bacteria at high density. Bacteria administration through water had no effect on growth and survival. In conclusion, the results show that high dietary concentrations of the mixture of bacteria used have potential stimulating impact on growth, survival, lysozyme activity and total Ig. But, further investigations are needed to demonstrate the optimal doses for emphasizing immune defence status.     

Correction to: Identifying crop yield gaps with site- and season-specific data-driven models of yield potential

Precision Agriculture -     

Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii

Previous genome comparisons have suggested that one important trend in vertebrate evolution has been a sharp rise in intron abundance. By using genomic data and expressed sequence tags from the marine annelid Platynereis dumerilii, we provide direct evidence that about two-thirds of human introns predate the bilaterian radiation but were lost from insect and nematode genomes to a large extent. A comparison of coding exon sequences confirms the ancestral nature of Platynereis and human genes. Thus, the urbilaterian ancestor had complex, intron-rich genes that have been retained in Platynereis and human.     

Numerical simulations of the seasonal circulation patterns and thermohaline structures of Prince William Sound,Alaska

A three‐dimensional, primitive‐equation ocean circulation model was applied to Prince William Sound, Alaska (3D‐PWS circulation model), under forcing of an ocean tide, freshwater runoff, surface heat flux, Alaska Coastal Current (ACC) throughflow (inflow/outflow), and daily (synoptic), spatially varying winds. The 3D structures and seasonal cycles of the circulation patterns, temperature, salinity (density), and mixed layer are examined. Freshwater runoff significantly contributes to the basin‐scale cyclonic circulation, which was not addressed in the previous simulations. Two typical circulation regimes, cyclonic and anticyclonic, characterize the complex flow patterns that depend on the intensities of the ACC thoughflow, freshwater discharge, and the synoptic wind. The spring (April–May) circulation pattern is characterized by a weak (maximum current 0.1 ms^?1) anticyclonic flow in the central Sound, while the autumn (September–October) circulation is dominated by a basin‐scale, cyclonic gyre (maximum current 0.2 ms^?1) due to the increase of the ACC throughflow and the maximum freshwater influence. During the summer, the circulation includes the cyclonic and anticyclonic gyres. During the winter, the circulation pattern is controlled by the basin‐scale cyclonic gyre and surface drift driven by the strong north‐easterly (south‐westward) wind forcing. The seasonal cycles of temperature (T) and salinity (S) vs. depth compare well with the observations. The simulated spring and autumn surface circulation patterns compare qualitatively well with the towed ADCP (acoustic Doppler current profilers) flow patterns and dynamic height patterns in the central Sound. An application of this model to zooplankton overwintering is discussed.     

Synergistic use of very high-frequency radar and discrete-return lidar for estimating biomass in temperate hardwood and mixed forests

• Introduction   

Accurate estimation of aboveground biomass is essential to better understand the carbon cycle in forest ecosystems.     

Impact of low hydration of barley grain on β-glucan degradation and lipid transfer protein (LTP1) modifications during the malting process

One of the objectives of the malting industry is to reduce the energy cost during kilning without major effect on malt quality. In this study, the impact of a low hydration steeping process on lipid transfer protein (LTP1) modifications and β-glucan breakdown was evaluated in low (LH) and high (HH) hydrated malts. LTP1 modifications analyzed by MS/MS revealed acylation, glycation, and disulfide bond breakage in both LH and HH malts. LTP1 free amine content measurement and fluorescence of Maillard protein adducts revealed no significant difference between LH and HH malts. Immunolabeling of LTP1 during malting highlighted the diffusion of the protein from the aleurone layer to the endosperm at the end of steeping in both LH and HH malts. By contrast, a significant higher amount of β-glucans was measured in LH malts after five days of germination, whereas no significant difference between LH and HH malts was revealed through immunostaining of β-glucans or evaluation of the endosperm integrity after seven days of germination. The possibility to reduce the effects of a low hydration steeping process on β-glucan hydrolysis by increasing germination time was discussed.     

Bioactivities of glycoalkaloids and their aglycones from Solanum species

Potatoes, tomatoes, and aubergines are all species of the Solanum genus and contain a vast array of secondary metabolites including calystegine alkaloids, phenolic compounds, lectins, and glycoalkaloids. Glycoalkaloids have been the subject of many literature papers, occur widely in the human diet, and are known to induce toxicity. Therefore, from a food safety perspective further information is required regarding their analysis, toxicity, and bioavailability. This is especially important in crop cultivars derived from wild species to prevent glycoalkaloid-induced toxicity. A comprehensive review of the bioactivity of glycoalkaloids and their aglycones of the Solanum species, particularly focused on comparison of their bioactivities including their anticancer, anticholesterol, antimicrobial, anti-inflammatory, antinociceptive, and antipyretic effects, toxicity, and synergism of action of the principal Solanum glycoalkaloids, correlated to differences of their individual molecular structures is presented.     

Electron donors and acceptors influence anaerobic soil organic matter mineralization in tidal marshes

Anaerobic decomposition in wetland soils is carried out by several interacting microbial processes that influence carbon storage and greenhouse gas emissions. To understand the role of wetlands in the global carbon cycle, it is critical to understand how differences in both electron donor (i.e., organic carbon) and terminal electron acceptor (TEA) availability influence anaerobic mineralization of soil organic matter. In this study we manipulated electron donors and acceptors to examine how these factors influence total rates of carbon mineralization and the pathways of microbial respiration (e.g., sulfate reduction versus methanogenesis). Using a field-based reciprocal transplant of soils from brackish and freshwater tidal marshes, in conjunction with laboratory amendments of TEAs, we examined how rates of organic carbon mineralization changed when soils with different carbon contents were exposed to different TEAs. Total mineralization (the sum of CO₂ + CH₄ produced) on a per gram soil basis was greater in the brackish marsh soils, which had higher soil organic matter content; however, on a per gram carbon basis, mineralization was greater in the freshwater soils, suggesting that the quality of carbon inputs from the freshwater plants was higher. Overall anaerobic metabolism was higher for both soil types incubated at the brackish site where SO₄²⁻ was the dominant TEA. When soils were amended with TEAs in the laboratory, more thermodynamically favorable respiration pathways typically resulted in greater organic matter mineralization (Fe(III) respiration > SO₄²⁻ reduction > methanogenesis). These results suggest that both electron donors and acceptors play important roles in regulating anaerobic microbial mineralization of soil organic matter.     

Short-range spatial variability of soil physico-chemical variables related to earthworm clustering in a neotropical gallery forest

In this study, we investigated the spatial distribution of an earthworm community together with the heterogeneity of selected soil properties in a gallery forest (GF) of the Colombian “Llanos”. We performed fine-scale spatial variability by intensively sampling 100 points distributed in the nodes of a regular grid with 5 m inter-sample distance. Non-parametric statistics were used and included SADIE analysis and partial Mantel test, in addition to geostatistics (semi-variograms) and correlogram computation. Our results indicated that the spatial distribution of earthworms was characterized by areas of presence (patches) and absence (gaps), although the general pattern was random at the scale of this study (<5 m), while soil physico-chemical characteristics showed a clumped spatial distribution. Contrary to previous results reported for the nearby savanna, a significant spatial association was found for two competing endogeic species Andiodrilus sp. and Glossodrilus sp. in the GF. Semi-variograms of soil environmental factors were adjusted to model families most commonly used (spherical and linear), and correlograms for earthworms showed significant positive and negative spatial autocorrelation for lag distances <15 m and >30 m, respectively. Partial Mantel test revealed specific significant relationships between soil variables and some species. The earthworm community of the GF displayed a random structure in a spatially clumped soil environment, and our results suggested that spatial distribution observed for some species could be the result of preferential selection of soil environmental factors. In other words, soil heterogeneity contributed to the formation of population patches for some earthworm species. The variability of suitable sites (resource availability patchiness) exerted an influence in the spatial distribution of earthworms at the scale used in this study, and we identified the spatial scale at which both environmental heterogeneity could influence and express earthworm impact on soil properties.     

Bioremediation of a Soil Industrially Contaminated by Wood Preservatives��Degradation of Polycyclic Aromatic Hydrocarbons and Monitoring of Coupled Arsenic Translocation

Two commercially available aerobic bioremediation methods (Daramend® and BioSan) were utilized to study the aerobic biodegradation of polycyclic aromatic hydrocarbons (PAH) and the effect of the simultaneously present arsenic. The soil was collected at an old wood preservation site, and the initial PAH₁₆-concentration was 46 mg/kg, with mainly high molecular weight congeners. The As concentration was 105 mg/kg with low availability as assessed with sequential extraction. To enhance the availability of PAH, the effect of a nonionic surfactant was evaluated. Degradation of both low and high molecular weight PAH was observed; however, after 30 weeks, the degradation was generally low and no treatment was significantly better than the others. The treatments had, on the other hand, an effect on As remobilization, with increased As concentration in the available fraction after treatment. This may be due to both the microbial activity and the presence of anoxic microsites in the soil. The overall efficiency of the biological treatment was further evaluated using the standardized ecotoxicity test utilizing Vibrio fischeri (Microtox®). The toxicity test demonstrated that the bioremediation led to an increase in toxicity, especially in treatments receiving surfactant. The surfactant implied an increase in contaminant availability but also a decrease in surface tension, which might have contributed to the overall toxicity increase.