Environmental correlates of body size distribution in Cyprinidae (Actinopterygians) depend on phylogenetic scale

The pattern of increasing species body size with increasing latitude has been noticed in different groups of animals. Here, we used seven key environmental factors and independent contrasts to assess body size latitudinal clines in Cyprinidae at two phylogenetic levels (inter‐ and intragenera), which were defined using a genus‐level supertree. Model selection procedures revealed that environmental factors shaping body size variation in Cyprinidae differed according to the phylogenetic scale considered. At the higher phylogenetic level, we found that both temperature (negative effect) and habitat availability (positive effect of drainage basin surface area) constituted mechanistic explanations of large‐scale body size distribution. No temperature‐related body size cline was observed at the intragenus level. Instead, competitive interaction (negative effect of species richness), habitat availability (positive effect of drainage basin surface area), migration ability and available energy (positive effects of glacial coverage and actual evapotranspiration) constitute alternative explanations at this lower phylogenetic scale. We conclude that (i) at the intergenus level, cyprinids do show a tendency to be smaller at high temperatures and larger at low temperatures, (ii) this tendency no longer exists at the intragenus level, (iii) latitude per se is a weak predictor of body size clines whatever the taxonomic level analysed, (iv) generalising geographical body size patterns may be rendered difficult by the superimposition of a series of mechanisms across different taxonomic scales, and (v) habitat size, here acting positively at both taxonomic scales, may play a major role in shaping riverine species body size clines.     

Reconstructing the history of human impacts on coastal biodiversity in Chile: constraints and opportunities

• 1. Although Chile is at the forefront in evaluating experimentally the importance of human harvesting impacts on coastal biodiversity, there are no evaluations of such impacts on a long‐term historical basis (tens to thousands of years). Different types of archival information (i.e. contemporaneous, archaeological, and palaeontological) were used to carry out a research programme based on the historical assessment of the impacts and intensity of resource extraction on coastal biodiversity along the Chilean coast.
• 2. In addition to recent scientific literature, different sources of contemporaneous information (e.g. museum collections, old reports and accounts) can reveal the human impacts observed in the more recent past. Furthermore, the large number of prehistoric shell middens along the entire Chilean coast offer access to ～11 000 years of history along the entire coast, although the faunal composition, structure, and dynamics of most of them remain largely unstudied.
• 3. Finally, the rich and widespread fossil record of some marine groups provides the opportunity to reconstruct the structure and dynamics of benthic communities during different phases of human influence (e.g. pre‐human, prehistoric harvesting, and modern harvesting).
• 4. Preliminary comparisons of fossil versus modern bivalve assemblages suggest marked changes in the species composition. Human impacts seem very recent and shifts in the structure of benthic assemblages may have occurred only a few centuries/decades ago.
• 5. In contrast, prehistoric harvesting, although intense, was apparently not enough to cause a profound impact on coastal ecosystems. The approach herein envisaged can provide the basis to build a historical baseline to evaluate the human impacts on the coastal biodiversity in the region. Copyright © 2009 John Wiley & Sons, Ltd.

     

Significant improvement of shrimp growth performance by growth hormone‐releasing peptide‐6 immersion treatments

Growth hormone‐releasing peptide‐6 (GHRP‐6) is one of the earliest developed synthetic peptidyl growth hormone secretagogue receptor agonists. These compounds mimic the effect of the endogenous ligand ghrelin. In vertebrates, ghrelin is a potent circulating orexigenic hormone with functional roles in controlling food intake, energy expenditure, adiposity, growth hormone secretion and immunity. Ghrelin has been studied mainly in vertebrates; thus, little is known about its role in invertebrates, including crustaceans. We first evaluated the effect of GHRP‐6 injection over feed intake in shrimp and its effects on shrimp growth when the peptide was administrated by successive immersion baths. GHRP‐6 increased feed intake, body weight and size, the number of rostral spines and gill branches, protein concentration and haemocyte number in treated shrimps. We also evaluated the peptide uptake and clearance in a pharmacokinetics, using [H³]GHRP‐6 administered to postlarvae. Given a limited exposure and efficient clearance of the peptide‐associated radioactivity from larvae, our findings suggested that GHRP‐6‐treated Litopenaeus vannamei can be consumed safely by humans after aquaculture applications. These results propose that GHRP‐6 could be an additional tool to study growth physiology in crustaceans and also a promising candidate for development into a new biotechnology product for improving shrimp growth and quality.     

Evaluation of Three In Vitro Enzyme Assays for Estimating Protein Digestibility in the Pacific White Shrimp Penaeus vannamei1

Abstract— In vitro enzyme assays are rapid, inexpensive techniques for estimating protein digestibility of feed ingredients. Three assays—the Lazo single-enzyme assay with porcine trypsin; the Hsu multi-enzyme assay with porcine trypsin, α-chymotrypsin, and peptidase; and the Satterlee multi-enzyme assay with porcine trypsin, α-chymotrypsin, peptidase, and bacterial protease—were used to estimate relative protein digestibility (RPD) of selected feed ingredients used in diets for the Pacific white shrimp Penaeus vannamei. Ingredients tested were casein, gelatin, rice bran, shrimp meal, soybean meal, wheat gluten, and six varieties of fish meal. A highly significant, inverse, linear relationship existed between final pH in each of the enzyme assays and in vivo apparent protein digestibility of the ingredient in P. vannamei feeding trials. Ranking of RPD coefficients obtained in the Lazo single-enzyme assay followed closely the ranking of published in vivo apparent protein digestibility coefficients for the same ingredients in P. vannamei digestibility trials. Results indicated that a single-enzyme assay with porcine trypsin identified differences in protein digestibility of feedstuffs in vitro as well as the two multi-enzyme assays tested. The porcine-trypsin, single-enzyme assay appears to be a potentially useful tool for evaluating protein quality and relative protein digestibility of feedstuffs for P. vannamei.     

Depth matters for bivalve culture in integrated multitrophic aquaculture (IMTA) and other polyculture strategies under non-eutrophic conditions

Bivalve cultivation, in single cultivation or in polyculture (including integrated multitrophic aquaculture; IMTA), is generally limited to eutrophic waters. We carried out a modeling study to test if, under meso- and oligotrophic conditions, depth could be a key factor for bivalve productivity associated to IMTA and other polyculture strategies. We applied the model Farm Aquaculture Resource Management (FARM) at three strata of the water column in two coastal fish farm areas in the Mediterranean Sea, using water column variables sampled seasonally to estimate the potential mussel production. According to FARM, mussel production was high in both areas and, in some cases, almost doubled when mussels were cultured below 25-m depth compared to shallower levels. Phytoplankton abundance is expected to notably influence mussel production compared to particulate organic matter. Thus, in meso- and oligotrophic stratified waters, where chlorophyll maximum is relatively deep, depth can be a key factor for the productivity of mussel cultivation. The obtained results could help to maximize the production of suspension-feeding bivalve cultivation and, therefore, the expansion and development of sustainable aquaculture in non-eutrophic marine waters.     

不同碳氮有机物料对有机菜田土壤细菌多样性的影响

通过模拟试验,利用聚合酶链式反应-变性梯度凝胶电泳法(PCR-DGGE),研究了施入不同碳氮有机物料(秸秆、苜蓿、有机肥、尿素)56d后,有机生产系统菜田土壤细菌群落结构的特征。结果表明,常规和有机生产系统土壤的细菌群落结构有明显差异。由DGGE图谱ShannonWiener多样性指数分析得知,有机背景处理的细菌多样性整体高于常规背景处理,且有机生产系统土壤加秸秆处理(OS)多样性最高,加入尿素后细菌多样性降低,相反,加入苜蓿后细菌多样性升高。非加权组平均法(UPGMA)聚类分析将常规和有机背景土壤分为两大族群。DGGE条带测序和系统进化树表明,30个条带归属为Proteobacteria、Acidobacteria、Actinobacteria、Firmicutes、Verrucomicrobia。常规土壤加苜蓿(CA)处理出现的特征性条带B13与有机背景处理的共有条带B28分别与Bacillus属和Pseudomonas假单胞菌属同源性最高。     

Germline mutations in genes within the MAPK pathway cause cardio-facio-cutaneous syndrome

Cardio-facio-cutaneous (CFC) syndrome is a sporadic developmental disorder involving characteristic craniofacial features, cardiac defects, ectodermal abnormalities, and developmental delay. We demonstrate that heterogeneous de novo missense mutations in three genes within the mitogen-activated protein kinase (MAPK) pathway cause CFC syndrome. The majority of cases (18 out of 23) are caused by mutations in BRAF, a gene frequently mutated in cancer. Of the 11 mutations identified, two result in amino acid substitutions that occur in tumors, but most are unique and suggest previously unknown mechanisms of B-Raf activation. Furthermore, three of five individuals without BRAF mutations had missense mutations in either MEK1 or MEK2, downstream effectors of B-Raf. Our findings highlight the involvement of the MAPK pathway in human development and will provide a molecular diagnosis of CFC syndrome.     

A selective activity-dependent requirement for dynamin 1 in synaptic vesicle endocytosis

Dynamin 1 is a neuron-specific guanosine triphosphatase thought to be critically required for the fission reaction of synaptic vesicle endocytosis. Unexpectedly, mice lacking dynamin 1 were able to form functional synapses, even though their postnatal viability was limited. However, during spontaneous network activity, branched, tubular plasma membrane invaginations accumulated, capped by clathrin-coated pits, in synapses of dynamin 1-knockout mice. Synaptic vesicle endocytosis was severely impaired during strong exogenous stimulation but resumed efficiently when the stimulus was terminated. Thus, dynamin 1-independent mechanisms can support limited synaptic vesicle endocytosis, but dynamin 1 is needed during high levels of neuronal activity.     

Structure of a thiol monolayer-protected gold nanoparticle at 1.1 A resolution

Structural information on nanometer-sized gold particles has been limited, due in part to the problem of preparing homogeneous material. Here we report the crystallization and x-ray structure determination of a p-mercaptobenzoic acid (p-MBA)-protected gold nanoparticle, which comprises 102 gold atoms and 44 p-MBAs. The central gold atoms are packed in a Marks decahedron, surrounded by additional layers of gold atoms in unanticipated geometries. The p-MBAs interact not only with the gold but also with one another, forming a rigid surface layer. The particles are chiral, with the two enantiomers alternating in the crystal lattice. The discrete nature of the particle may be explained by the closing of a 58-electron shell.